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Started by an SCM change Started by an SCM change Running as SYSTEM Building remotely on Debian_Linux-VM (debian linux) in workspace /home/jenkins/workspace/Debian_Linux-Ice-Ocean Updating https://issm.ess.uci.edu/svn/issm/issm/trunk-jpl@HEAD at revision HEAD Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ U src/c/analyses/StressbalanceAnalysis.cpp U src/c/modules/SurfaceMassBalancex/Gembx.cpp At revision 28251 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ [Debian_Linux-Ice-Ocean] $ /bin/bash /tmp/jenkins2957081264578968573.sh Cleaning up execution directory ====================================================== Determining Installation type ====================================================== Previous revision number: 28249 Current revision number: 28251 List of updated files /issm/trunk-jpl/src/c/analyses/StressbalanceAnalysis.cpp /issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/Gembx.cpp Determining installation type -- checking for changed externalpackages... no -- checking for reconfiguration... no -- checking for recompilation... yes Recording current svn version: 28251 ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping m1qn3 ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Compiling ISSM ====================================================== Making with 8 CPUs make all-recursive make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' Making all in src make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' Making all in c make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXX modules/SurfaceMassBalancex/libISSMCore_la-Gembx.lo CXX analyses/libISSMCore_la-StressbalanceAnalysis.lo CXXLD libISSMCore.la CXXLD libISSMModules.la CXXLD issm_slc.exe CXXLD issm.exe CXXLD issm_ocean.exe CXXLD kriging.exe make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' Making all in m make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' Making all in wrappers make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' Making all in matlab make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' CXXLD libISSMMatlab.la CXXLD BamgConvertMesh_matlab.la CXXLD BamgTriangulate_matlab.la CXXLD ContourToNodes_matlab.la CXXLD ContourToMesh_matlab.la CXXLD ElementConnectivity_matlab.la CXXLD BamgMesher_matlab.la CXXLD DistanceToMaskBoundary_matlab.la CXXLD ExpSimplify_matlab.la CXXLD ExpToLevelSet_matlab.la CXXLD InterpFromGridToMesh_matlab.la CXXLD InterpFromMesh2d_matlab.la CXXLD InterpFromMeshToMesh2d_matlab.la CXXLD InterpFromMeshToGrid_matlab.la CXXLD InterpFromMeshToMesh3d_matlab.la CXXLD IssmConfig_matlab.la CXXLD M1qn3_matlab.la CXXLD MeshPartition_matlab.la CXXLD MeshProfileIntersection_matlab.la CXXLD NodeConnectivity_matlab.la CXXLD PointCloudFindNeighbors_matlab.la CXXLD ProcessRifts_matlab.la CXXLD PropagateFlagsFromConnectivity_matlab.la CXXLD Scotch_matlab.la CXXLD Triangle_matlab.la CXXLD Kriging_matlab.la make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' Making install in src make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' Making install in c make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD issm_ocean.exe CXXLD kriging.exe make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD issm_ocean.exe CXXLD kriging.exe /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libISSMCore.la libISSMOverload.la libISSMModules.la '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' libtool: install: /usr/bin/install -c .libs/libISSMCore.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMCore.so libtool: install: /usr/bin/install -c .libs/libISSMCore.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMCore.la libtool: install: /usr/bin/install -c .libs/libISSMOverload.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMOverload.so libtool: install: /usr/bin/install -c .libs/libISSMOverload.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMOverload.la libtool: warning: relinking 'libISSMModules.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -g -O2 -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -avoid-version -o libISSMModules.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ./shared/Threads/libISSMModules_la-LaunchThread.lo ./shared/Threads/libISSMModules_la-PartitionRange.lo ./shared/Exp/libISSMModules_la-exp.lo ./shared/Triangle/libISSMModules_la-AssociateSegmentToElement.lo ./shared/Triangle/libISSMModules_la-GridInsideHole.lo ./shared/Triangle/libISSMModules_la-OrderSegments.lo ./shared/Triangle/libISSMModules_la-SplitMeshForRifts.lo ./shared/Triangle/libISSMModules_la-TriangleUtils.lo ./modules/Trianglex/libISSMModules_la-Trianglex.lo ./modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo ./modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo ./modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo ./modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo ./modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo ./modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo ./modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo ./modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo ./modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo ./modules/Krigingx/libISSMModules_la-Krigingx.lo ./modules/Krigingx/libISSMModules_la-pKrigingx.lo ./libISSMCore.la -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/triangle/install/lib -ltriangle -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lflapack -lfblas ) libtool: install: /usr/bin/install -c .libs/libISSMModules.soT /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMModules.so libtool: install: /usr/bin/install -c .libs/libISSMModules.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMModules.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/aux-config:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/scripts:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/dyson/:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c issm.exe issm_slc.exe issm_ocean.exe kriging.exe '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' libtool: install: /usr/bin/install -c .libs/issm.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm.exe libtool: install: /usr/bin/install -c .libs/issm_slc.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm_slc.exe libtool: install: /usr/bin/install -c .libs/issm_ocean.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm_ocean.exe libtool: install: /usr/bin/install -c .libs/kriging.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/kriging.exe make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' Making install in m make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' Making install in wrappers make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' Making install in matlab make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libISSMMatlab.la libISSMApi.la BamgConvertMesh_matlab.la BamgMesher_matlab.la BamgTriangulate_matlab.la ContourToMesh_matlab.la ContourToNodes_matlab.la DistanceToMaskBoundary_matlab.la ElementConnectivity_matlab.la ExpSimplify_matlab.la ExpToLevelSet_matlab.la InterpFromGridToMesh_matlab.la InterpFromMesh2d_matlab.la InterpFromMeshToGrid_matlab.la InterpFromMeshToMesh2d_matlab.la InterpFromMeshToMesh3d_matlab.la IssmConfig_matlab.la M1qn3_matlab.la MeshPartition_matlab.la MeshProfileIntersection_matlab.la NodeConnectivity_matlab.la PointCloudFindNeighbors_matlab.la ProcessRifts_matlab.la PropagateFlagsFromConnectivity_matlab.la Scotch_matlab.la Triangle_matlab.la Kriging_matlab.la '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' libtool: warning: relinking 'libISSMMatlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -g -O2 -avoid-version -o libISSMMatlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ./io/libISSMMatlab_la-CheckNumMatlabArguments.lo ./io/libISSMMatlab_la-FetchMatlabData.lo ./io/libISSMMatlab_la-WriteMatlabData.lo ./../../c/libISSMCore.la ./../../c/libISSMModules.la -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -ldmumps -lcmumps -lmumps_common -lpord -lparmetis -lzmumps -lmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lparmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/libISSMMatlab.soT /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMMatlab.so libtool: install: /usr/bin/install -c .libs/libISSMMatlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMMatlab.la libtool: install: /usr/bin/install -c .libs/libISSMApi.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMApi.so libtool: install: /usr/bin/install -c .libs/libISSMApi.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMApi.la libtool: warning: relinking 'BamgConvertMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgConvertMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgConvertMesh/BamgConvertMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgConvertMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgConvertMesh_matlab.la libtool: warning: relinking 'BamgMesher_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgMesher_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgMesher/BamgMesher.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgMesher_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgMesher_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgMesher_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgMesher_matlab.la libtool: warning: relinking 'BamgTriangulate_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgTriangulate_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgTriangulate/BamgTriangulate.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgTriangulate_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgTriangulate_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgTriangulate_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgTriangulate_matlab.la libtool: warning: relinking 'ContourToMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ContourToMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ContourToMesh/ContourToMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ContourToMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ContourToMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToMesh_matlab.la libtool: warning: relinking 'ContourToNodes_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ContourToNodes_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ContourToNodes/ContourToNodes.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ContourToNodes_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToNodes_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ContourToNodes_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToNodes_matlab.la libtool: warning: relinking 'DistanceToMaskBoundary_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o DistanceToMaskBoundary_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../DistanceToMaskBoundary/DistanceToMaskBoundary.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/DistanceToMaskBoundary_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/DistanceToMaskBoundary_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/DistanceToMaskBoundary_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/DistanceToMaskBoundary_matlab.la libtool: warning: relinking 'ElementConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ElementConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ElementConnectivity/ElementConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ElementConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ElementConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ElementConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ElementConnectivity_matlab.la libtool: warning: relinking 'ExpSimplify_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ExpSimplify_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ExpSimplify/ExpSimplify.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ExpSimplify_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpSimplify_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ExpSimplify_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpSimplify_matlab.la libtool: warning: relinking 'ExpToLevelSet_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ExpToLevelSet_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ExpToLevelSet/ExpToLevelSet.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpToLevelSet_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpToLevelSet_matlab.la libtool: warning: relinking 'InterpFromGridToMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromGridToMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromGridToMesh/InterpFromGridToMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGridToMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGridToMesh_matlab.la libtool: warning: relinking 'InterpFromMesh2d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMesh2d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMesh2d/InterpFromMesh2d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMesh2d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMesh2d_matlab.la libtool: warning: relinking 'InterpFromMeshToGrid_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToGrid_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToGrid/InterpFromMeshToGrid.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToGrid_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToGrid_matlab.la libtool: warning: relinking 'InterpFromMeshToMesh2d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh2d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh2d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh2d_matlab.la libtool: warning: relinking 'InterpFromMeshToMesh3d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh3d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh3d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh3d_matlab.la libtool: warning: relinking 'IssmConfig_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o IssmConfig_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../IssmConfig/IssmConfig.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/IssmConfig_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/IssmConfig_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/IssmConfig_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/IssmConfig_matlab.la libtool: warning: relinking 'M1qn3_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o M1qn3_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../M1qn3/M1qn3.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/M1qn3_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/M1qn3_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/M1qn3_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/M1qn3_matlab.la libtool: warning: relinking 'MeshPartition_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o MeshPartition_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../MeshPartition/MeshPartition.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/MeshPartition_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshPartition_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/MeshPartition_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshPartition_matlab.la libtool: warning: relinking 'MeshProfileIntersection_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o MeshProfileIntersection_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../MeshProfileIntersection/MeshProfileIntersection.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshProfileIntersection_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshProfileIntersection_matlab.la libtool: warning: relinking 'NodeConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o NodeConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../NodeConnectivity/NodeConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/NodeConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/NodeConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/NodeConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/NodeConnectivity_matlab.la libtool: warning: relinking 'PointCloudFindNeighbors_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o PointCloudFindNeighbors_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../PointCloudFindNeighbors/PointCloudFindNeighbors.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/PointCloudFindNeighbors_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PointCloudFindNeighbors_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/PointCloudFindNeighbors_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PointCloudFindNeighbors_matlab.la libtool: warning: relinking 'ProcessRifts_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ProcessRifts_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ProcessRifts/ProcessRifts.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ProcessRifts_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ProcessRifts_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ProcessRifts_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ProcessRifts_matlab.la libtool: warning: relinking 'PropagateFlagsFromConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o PropagateFlagsFromConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/PropagateFlagsFromConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PropagateFlagsFromConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/PropagateFlagsFromConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PropagateFlagsFromConnectivity_matlab.la libtool: warning: relinking 'Scotch_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Scotch_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Scotch/Scotch.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/Scotch_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Scotch_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Scotch_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Scotch_matlab.la libtool: warning: relinking 'Triangle_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Triangle_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Triangle/Triangle.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/triangle/install/lib -ltriangle ) libtool: install: /usr/bin/install -c .libs/Triangle_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Triangle_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Triangle_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Triangle_matlab.la libtool: warning: relinking 'Kriging_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Kriging_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Kriging/Kriging.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/Kriging_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Kriging_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Kriging_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Kriging_matlab.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/aux-config:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/scripts:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/dyson/:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' +++ Removing old junit reports from: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog/results +++ Running case: MATLAB-4001 +++ working dir: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog [41;37m step #1: Parameters [0m saving data in: Models/IceOcean.Parameters [41;37m step #2: Bathymetry [0m saving data in: Models/IceOcean.Bathymetry [41;37m step #3: IceSheetGeometry [0m saving data in: Models/IceOcean.IceSheetGeometry [41;37m step #4: GetMITgcm [0m --2024-05-02 11:03:49-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz Resolving github.com (github.com)... 140.82.116.3 Connecting to github.com (github.com)|140.82.116.3|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following] --2024-05-02 11:03:49-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i Resolving codeload.github.com (codeload.github.com)... 140.82.116.10 Connecting to codeload.github.com (codeload.github.com)|140.82.116.10|:443... connected. HTTP request sent, awaiting response... 200 OK Length: unspecified [application/x-gzip] Saving to: checkpoint68i.tar.gz checkpoint68i.tar.g [<=> ] 0 --.-KB/s checkpoint68i.tar.g [ <=> ] 855.81K 3.67MB/s checkpoint68i.tar.g [ <=> ] 5.90M 13.8MB/s checkpoint68i.tar.g [ <=> ] 10.32M 16.4MB/s checkpoint68i.tar.g [ <=> ] 14.96M 18.0MB/s checkpoint68i.tar.g [ <=> ] 19.42M 18.9MB/s checkpoint68i.tar.g [ <=> ] 23.84M 19.4MB/s checkpoint68i.tar.g [ <=> ] 28.51M 19.9MB/s checkpoint68i.tar.g [ <=> ] 33.33M 20.5MB/s checkpoint68i.tar.g [ <=> ] 38.16M 20.9MB/s checkpoint68i.tar.g [ <=> ] 42.85M 21.1MB/s checkpoint68i.tar.g [ <=> ] 45.83M 20.5MB/s checkpoint68i.tar.g [ <=> ] 47.39M 19.5MB/s checkpoint68i.tar.g [ <=> ] 50.12M 19.0MB/s checkpoint68i.tar.g [ <=> ] 51.89M 18.3MB/s checkpoint68i.tar.g [ <=> ] 55.89M 18.4MB/s checkpoint68i.tar.g [ <=> ] 58.33M 18.7MB/s checkpoint68i.tar.g [ <=>] 61.55M 18.9MB/s checkpoint68i.tar.g [ <=> ] 63.95M 17.7MB/s checkpoint68i.tar.g [ <=> ] 66.95M 17.3MB/s 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MITgcm-checkpoint68i/eesupp/src/exch1_rx.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_uv_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_z_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_ad_diff.list MITgcm-checkpoint68i/eesupp/src/exch_cycle_ebl.F MITgcm-checkpoint68i/eesupp/src/exch_init.F MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_y.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_y.template MITgcm-checkpoint68i/eesupp/src/exch_s3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_sm_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_agrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_z_3d_rx.template MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_ag_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_tr_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rs.F MITgcm-checkpoint68i/eesupp/src/fool_the_compiler.F MITgcm-checkpoint68i/eesupp/src/gather_2d_rx.template MITgcm-checkpoint68i/eesupp/src/gather_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/gather_vec_rx.template MITgcm-checkpoint68i/eesupp/src/gather_xz.F MITgcm-checkpoint68i/eesupp/src/gather_yz.F MITgcm-checkpoint68i/eesupp/src/get_periodic_interval.F 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MITgcm-checkpoint68i/model/src/set_ref_state.F MITgcm-checkpoint68i/model/src/solve_for_pressure.F MITgcm-checkpoint68i/model/src/solve_pentadiagonal.F MITgcm-checkpoint68i/model/src/solve_tridiagonal.F MITgcm-checkpoint68i/model/src/solve_uv_tridiago.F MITgcm-checkpoint68i/model/src/state_summary.F MITgcm-checkpoint68i/model/src/swfrac.F MITgcm-checkpoint68i/model/src/taueddy_init_varia.F MITgcm-checkpoint68i/model/src/taueddy_tendency_apply.F MITgcm-checkpoint68i/model/src/temp_integrate.F MITgcm-checkpoint68i/model/src/the_main_loop.F MITgcm-checkpoint68i/model/src/the_model_main.F MITgcm-checkpoint68i/model/src/thermodynamics.F MITgcm-checkpoint68i/model/src/timestep.F MITgcm-checkpoint68i/model/src/timestep_tracer.F MITgcm-checkpoint68i/model/src/timestep_wvel.F MITgcm-checkpoint68i/model/src/tracers_correction_step.F MITgcm-checkpoint68i/model/src/tracers_iigw_correction.F MITgcm-checkpoint68i/model/src/turnoff_model_io.F MITgcm-checkpoint68i/model/src/update_cg2d.F MITgcm-checkpoint68i/model/src/update_etah.F MITgcm-checkpoint68i/model/src/update_etaws.F MITgcm-checkpoint68i/model/src/update_masks_etc.F MITgcm-checkpoint68i/model/src/update_r_star.F MITgcm-checkpoint68i/model/src/update_sigma.F MITgcm-checkpoint68i/model/src/update_surf_dr.F MITgcm-checkpoint68i/model/src/write_grid.F MITgcm-checkpoint68i/model/src/write_pickup.F MITgcm-checkpoint68i/model/src/write_state.F MITgcm-checkpoint68i/optim/ MITgcm-checkpoint68i/optim/Makefile MITgcm-checkpoint68i/optim/Makefile_macosx MITgcm-checkpoint68i/optim/README.md MITgcm-checkpoint68i/optim/blas1.h MITgcm-checkpoint68i/optim/data.ctrl MITgcm-checkpoint68i/optim/data.ecco MITgcm-checkpoint68i/optim/data.optim MITgcm-checkpoint68i/optim/flowchart_optim.txt MITgcm-checkpoint68i/optim/minimization.h MITgcm-checkpoint68i/optim/optim.h MITgcm-checkpoint68i/optim/optim_initmod.F MITgcm-checkpoint68i/optim/optim_main.F MITgcm-checkpoint68i/optim/optim_numbmod.F MITgcm-checkpoint68i/optim/optim_readdata.F MITgcm-checkpoint68i/optim/optim_sub.F MITgcm-checkpoint68i/optim/optim_write_control.F MITgcm-checkpoint68i/optim/optim_writedata.F MITgcm-checkpoint68i/optim/simul.F MITgcm-checkpoint68i/optim/to_do.txt MITgcm-checkpoint68i/optim/utils.F MITgcm-checkpoint68i/optim/xerbla.F MITgcm-checkpoint68i/pkg/ MITgcm-checkpoint68i/pkg/admtlm/ MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h MITgcm-checkpoint68i/pkg/aim_v23/ MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_surf_bc.F MITgcm-checkpoint68i/pkg/aim_v23/aim_tendency_apply.F MITgcm-checkpoint68i/pkg/aim_v23/aim_v23_description.tex MITgcm-checkpoint68i/pkg/aim_v23/aim_write_local.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_phys.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_tave.F MITgcm-checkpoint68i/pkg/aim_v23/com_cnvcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcing.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_lsccon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_radcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_radvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_sflcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_vdicon.h MITgcm-checkpoint68i/pkg/aim_v23/phy_const.h MITgcm-checkpoint68i/pkg/aim_v23/phy_convmf.F 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MITgcm-checkpoint68i/pkg/autodiff/adcommon.h MITgcm-checkpoint68i/pkg/autodiff/addamp_adj.F MITgcm-checkpoint68i/pkg/autodiff/addummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/addummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/addummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/adopen_adclose.F MITgcm-checkpoint68i/pkg/autodiff/adread_adwrite.F MITgcm-checkpoint68i/pkg/autodiff/adread_adwrite_i.F MITgcm-checkpoint68i/pkg/autodiff/adzero_adj.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_ad_diff.list MITgcm-checkpoint68i/pkg/autodiff/autodiff_check.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_findunit.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode.flow MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set_ad.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set_g.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset_ad.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset_g.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_ini_model_io.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_init_varia.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_readparms.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_restore.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_store.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_whtapeio_sync.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_whtapeio_sync.flow MITgcm-checkpoint68i/pkg/autodiff/cg2d.flow MITgcm-checkpoint68i/pkg/autodiff/cg2d_mad.F MITgcm-checkpoint68i/pkg/autodiff/check_lev1_dir_forcing.h MITgcm-checkpoint68i/pkg/autodiff/check_lev1_dir_ocephys.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint.flow MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev1_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev1_template.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev2_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev3_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev4_directives.h MITgcm-checkpoint68i/pkg/autodiff/common.flow MITgcm-checkpoint68i/pkg/autodiff/copy_ad_uv_outp.F MITgcm-checkpoint68i/pkg/autodiff/copy_advar_outp.F MITgcm-checkpoint68i/pkg/autodiff/damp_adj.F MITgcm-checkpoint68i/pkg/autodiff/damp_adj.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/dummy_for_etan.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/dummy_in_dynamics.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/dummy_in_stepping.flow MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xy.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xy_uv.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xyz.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xyz_uv.F MITgcm-checkpoint68i/pkg/autodiff/g_common.h MITgcm-checkpoint68i/pkg/autodiff/g_dummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_tile_ad.F MITgcm-checkpoint68i/pkg/autodiff/initialisation.flow MITgcm-checkpoint68i/pkg/autodiff/model_ad.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.F MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction_ad.F MITgcm-checkpoint68i/pkg/autodiff/system.flow MITgcm-checkpoint68i/pkg/autodiff/tamc.h MITgcm-checkpoint68i/pkg/autodiff/zero_adj.F MITgcm-checkpoint68i/pkg/autodiff/zero_adj.flow MITgcm-checkpoint68i/pkg/bbl/ MITgcm-checkpoint68i/pkg/bbl/BBL.h MITgcm-checkpoint68i/pkg/bbl/BBL_OPTIONS.h MITgcm-checkpoint68i/pkg/bbl/bbl_ad.flow MITgcm-checkpoint68i/pkg/bbl/bbl_ad_diff.list MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rho.F MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rhs.F MITgcm-checkpoint68i/pkg/bbl/bbl_check.F MITgcm-checkpoint68i/pkg/bbl/bbl_description.tex MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_init.F MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_state.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_fixed.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_varia.F MITgcm-checkpoint68i/pkg/bbl/bbl_read_pickup.F MITgcm-checkpoint68i/pkg/bbl/bbl_readparms.F MITgcm-checkpoint68i/pkg/bbl/bbl_tendency_apply.F MITgcm-checkpoint68i/pkg/bbl/bbl_write_pickup.F MITgcm-checkpoint68i/pkg/bling/ MITgcm-checkpoint68i/pkg/bling/BLING_LOAD.h MITgcm-checkpoint68i/pkg/bling/BLING_OPTIONS.h MITgcm-checkpoint68i/pkg/bling/BLING_VARS.h MITgcm-checkpoint68i/pkg/bling/CHANGES_TO_BLING.txt MITgcm-checkpoint68i/pkg/bling/bling_ad.flow MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_diff.list MITgcm-checkpoint68i/pkg/bling/bling_airseaflux.F MITgcm-checkpoint68i/pkg/bling/bling_bio.F MITgcm-checkpoint68i/pkg/bling/bling_bio_nitrogen.F MITgcm-checkpoint68i/pkg/bling/bling_carbon_chem.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_init.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_sys.F MITgcm-checkpoint68i/pkg/bling/bling_description.txt MITgcm-checkpoint68i/pkg/bling/bling_diagnostics_init.F MITgcm-checkpoint68i/pkg/bling/bling_fields_load.F MITgcm-checkpoint68i/pkg/bling/bling_ini_forcing.F MITgcm-checkpoint68i/pkg/bling/bling_init_fixed.F MITgcm-checkpoint68i/pkg/bling/bling_init_varia.F MITgcm-checkpoint68i/pkg/bling/bling_light.F MITgcm-checkpoint68i/pkg/bling/bling_main.F MITgcm-checkpoint68i/pkg/bling/bling_min_val.F MITgcm-checkpoint68i/pkg/bling/bling_mixedlayer.F MITgcm-checkpoint68i/pkg/bling/bling_read_pickup.F MITgcm-checkpoint68i/pkg/bling/bling_readparms.F MITgcm-checkpoint68i/pkg/bling/bling_sgs.F MITgcm-checkpoint68i/pkg/bling/bling_solvesaphe.F MITgcm-checkpoint68i/pkg/bling/bling_tr_register.F MITgcm-checkpoint68i/pkg/bling/bling_write_pickup.F MITgcm-checkpoint68i/pkg/bulk_force/ MITgcm-checkpoint68i/pkg/bulk_force/BULKF.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_CONSERV.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_INT.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_PARAMS.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_TAVE.h MITgcm-checkpoint68i/pkg/bulk_force/BULK_FORCE_OPTIONS.h MITgcm-checkpoint68i/pkg/bulk_force/bulkf_ave.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_fields_load.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_flux_adjust.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_forcing.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_aim.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lanl.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lay.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_init_varia.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_output.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_readparms.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_sh2rh_aim.F MITgcm-checkpoint68i/pkg/cal/ MITgcm-checkpoint68i/pkg/cal/CAL_OPTIONS.h MITgcm-checkpoint68i/pkg/cal/cal.h MITgcm-checkpoint68i/pkg/cal/cal_ad_diff.list MITgcm-checkpoint68i/pkg/cal/cal_addtime.F MITgcm-checkpoint68i/pkg/cal/cal_checkdate.F MITgcm-checkpoint68i/pkg/cal/cal_compdates.F MITgcm-checkpoint68i/pkg/cal/cal_convdate.F MITgcm-checkpoint68i/pkg/cal/cal_copydate.F MITgcm-checkpoint68i/pkg/cal/cal_daysformonth.F MITgcm-checkpoint68i/pkg/cal/cal_dayspermonth.F MITgcm-checkpoint68i/pkg/cal/cal_description.tex MITgcm-checkpoint68i/pkg/cal/cal_fulldate.F MITgcm-checkpoint68i/pkg/cal/cal_getdate.F MITgcm-checkpoint68i/pkg/cal/cal_getmonthsrec.F MITgcm-checkpoint68i/pkg/cal/cal_init_fixed.F MITgcm-checkpoint68i/pkg/cal/cal_intdays.F MITgcm-checkpoint68i/pkg/cal/cal_intmonths.F MITgcm-checkpoint68i/pkg/cal/cal_intyears.F MITgcm-checkpoint68i/pkg/cal/cal_isleap.F MITgcm-checkpoint68i/pkg/cal/cal_monthsforyear.F MITgcm-checkpoint68i/pkg/cal/cal_monthsperyear.F MITgcm-checkpoint68i/pkg/cal/cal_numints.F MITgcm-checkpoint68i/pkg/cal/cal_printdate.F MITgcm-checkpoint68i/pkg/cal/cal_printerror.F MITgcm-checkpoint68i/pkg/cal/cal_readparms.F MITgcm-checkpoint68i/pkg/cal/cal_set.F MITgcm-checkpoint68i/pkg/cal/cal_stepsforday.F MITgcm-checkpoint68i/pkg/cal/cal_stepsperday.F MITgcm-checkpoint68i/pkg/cal/cal_subdates.F MITgcm-checkpoint68i/pkg/cal/cal_summary.F MITgcm-checkpoint68i/pkg/cal/cal_time2dump.F MITgcm-checkpoint68i/pkg/cal/cal_timeinterval.F MITgcm-checkpoint68i/pkg/cal/cal_timepassed.F MITgcm-checkpoint68i/pkg/cal/cal_timestamp.F MITgcm-checkpoint68i/pkg/cal/cal_toseconds.F MITgcm-checkpoint68i/pkg/cal/cal_weekday.F MITgcm-checkpoint68i/pkg/cd_code/ MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_OPTIONS.h MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_VARS.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad.flow MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_diff.list MITgcm-checkpoint68i/pkg/cd_code/cd_code_ini_vars.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_init_fixed.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_read_pickup.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_scheme.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_write_pickup.F MITgcm-checkpoint68i/pkg/cfc/ MITgcm-checkpoint68i/pkg/cfc/CFC.h MITgcm-checkpoint68i/pkg/cfc/CFC_ATMOS.h MITgcm-checkpoint68i/pkg/cfc/CFC_SIZE.h MITgcm-checkpoint68i/pkg/cfc/cfc11_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc11_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_diff.list MITgcm-checkpoint68i/pkg/cfc/cfc_atmos.F MITgcm-checkpoint68i/pkg/cfc/cfc_check.F MITgcm-checkpoint68i/pkg/cfc/cfc_fields_load.F MITgcm-checkpoint68i/pkg/cfc/cfc_param.F MITgcm-checkpoint68i/pkg/cfc/cfc_readparms.F MITgcm-checkpoint68i/pkg/cfc/cfc_tr_register.F MITgcm-checkpoint68i/pkg/cheapaml/ MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML.h MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML_OPTIONS.h MITgcm-checkpoint68i/pkg/cheapaml/cheapaml.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_calc_rhs.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_coare3_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_copy_edges.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_diagnostics_init.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_fields_load.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_fixed.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_varia.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_lanl_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_read_pickup.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_readparms.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_seaice.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_timestep.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_write_pickup.F MITgcm-checkpoint68i/pkg/chronos/ MITgcm-checkpoint68i/pkg/chronos/chronos.F MITgcm-checkpoint68i/pkg/chronos/chronos.h MITgcm-checkpoint68i/pkg/compon_communic/ MITgcm-checkpoint68i/pkg/compon_communic/CPLR_SIG.h MITgcm-checkpoint68i/pkg/compon_communic/comprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/generate_tag.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_all_check.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2dbl.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2int.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2real.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_dbl2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init1.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2a.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2b.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_initcomp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_int2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_match_comp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_real2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_sortranks.F MITgcm-checkpoint68i/pkg/cost/ MITgcm-checkpoint68i/pkg/cost/COST_OPTIONS.h MITgcm-checkpoint68i/pkg/cost/adcost.h MITgcm-checkpoint68i/pkg/cost/cost.h MITgcm-checkpoint68i/pkg/cost/cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/cost/cost_ad.flow MITgcm-checkpoint68i/pkg/cost/cost_ad_diff.list MITgcm-checkpoint68i/pkg/cost/cost_atlantic_heat.F MITgcm-checkpoint68i/pkg/cost/cost_check.F MITgcm-checkpoint68i/pkg/cost/cost_dependent_init.F MITgcm-checkpoint68i/pkg/cost/cost_depth.F MITgcm-checkpoint68i/pkg/cost/cost_final.F MITgcm-checkpoint68i/pkg/cost/cost_final_restore.F MITgcm-checkpoint68i/pkg/cost/cost_final_store.F MITgcm-checkpoint68i/pkg/cost/cost_init_varia.F MITgcm-checkpoint68i/pkg/cost/cost_readparms.F MITgcm-checkpoint68i/pkg/cost/cost_state_final.F MITgcm-checkpoint68i/pkg/cost/cost_test.F MITgcm-checkpoint68i/pkg/cost/cost_tile.F MITgcm-checkpoint68i/pkg/cost/cost_tracer.F MITgcm-checkpoint68i/pkg/cost/cost_vector.F MITgcm-checkpoint68i/pkg/cost/g_cost.h MITgcm-checkpoint68i/pkg/ctrl/ MITgcm-checkpoint68i/pkg/ctrl/CTRL_FIELDS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_GENARR.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OBCS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OPTIONS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_SIZE.h MITgcm-checkpoint68i/pkg/ctrl/adctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_diff.list MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.flow MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound_tl.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_check.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_driver.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_depth_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_description.tex MITgcm-checkpoint68i/pkg/ctrl/ctrl_dummy.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_mask.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcse.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsn.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcss.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsw.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getrec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_hfacc_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_ctrlvar.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_obcs_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_wet.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_local_params.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_forcing.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_ecco.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_pack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_readparms.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_fname.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_smooth.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_summary.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_swapffields.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_toolbox.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_unpack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_weights.h MITgcm-checkpoint68i/pkg/ctrl/optim.h MITgcm-checkpoint68i/pkg/ctrl/optim_readparms.F MITgcm-checkpoint68i/pkg/debug/ MITgcm-checkpoint68i/pkg/debug/DEBUG_OPTIONS.h MITgcm-checkpoint68i/pkg/debug/chksum_tiled.F MITgcm-checkpoint68i/pkg/debug/debug_ad.flow MITgcm-checkpoint68i/pkg/debug/debug_call.F MITgcm-checkpoint68i/pkg/debug/debug_cs_corner_uv.F MITgcm-checkpoint68i/pkg/debug/debug_enter.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rs.F MITgcm-checkpoint68i/pkg/debug/debug_leave.F MITgcm-checkpoint68i/pkg/debug/debug_msg.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rs.F MITgcm-checkpoint68i/pkg/debug/fill_in_corners_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rs.F MITgcm-checkpoint68i/pkg/diagnostics/ MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_CALC.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_SIZE.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGSTATS_REGIONS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAG_OPTIONS.h MITgcm-checkpoint68i/pkg/diagnostics/diag_calc_psivel.F MITgcm-checkpoint68i/pkg/diagnostics/diag_cg2d.F MITgcm-checkpoint68i/pkg/diagnostics/diag_vegtile_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad.flow MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad_diff.list MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_addtolist.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_calc_phivel.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_field.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_state.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fract_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_early.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_fixed.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_varia.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_p2p.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_vert.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_is_on.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_list_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_main_init.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_read_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_readparms.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_setdiag.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_status_error.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_sum_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_summary.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_switch_onoff.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_utils.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_adj.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ascii_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_close_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_global.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_local.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_others_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_output.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_regions.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_setdiag.F MITgcm-checkpoint68i/pkg/dic/ MITgcm-checkpoint68i/pkg/dic/DIC_ATMOS.h MITgcm-checkpoint68i/pkg/dic/DIC_COST.h MITgcm-checkpoint68i/pkg/dic/DIC_CTRL.h MITgcm-checkpoint68i/pkg/dic/DIC_LOAD.h MITgcm-checkpoint68i/pkg/dic/DIC_OPTIONS.h MITgcm-checkpoint68i/pkg/dic/DIC_VARS.h MITgcm-checkpoint68i/pkg/dic/alk_surfforcing.F MITgcm-checkpoint68i/pkg/dic/bio_export.F MITgcm-checkpoint68i/pkg/dic/calcite_saturation.F MITgcm-checkpoint68i/pkg/dic/car_flux.F MITgcm-checkpoint68i/pkg/dic/car_flux_omega_top.F MITgcm-checkpoint68i/pkg/dic/carbon_chem.F MITgcm-checkpoint68i/pkg/dic/dic_ad.flow MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_diff.list MITgcm-checkpoint68i/pkg/dic/dic_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_diags.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_init.F MITgcm-checkpoint68i/pkg/dic/dic_cost.F MITgcm-checkpoint68i/pkg/dic/dic_diagnostics_init.F MITgcm-checkpoint68i/pkg/dic/dic_fields_load.F MITgcm-checkpoint68i/pkg/dic/dic_fields_update.F MITgcm-checkpoint68i/pkg/dic/dic_ini_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_ini_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_init_fixed.F MITgcm-checkpoint68i/pkg/dic/dic_init_varia.F MITgcm-checkpoint68i/pkg/dic/dic_mnc_init.F MITgcm-checkpoint68i/pkg/dic/dic_read_co2_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_read_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_readparms.F MITgcm-checkpoint68i/pkg/dic/dic_set_control.F MITgcm-checkpoint68i/pkg/dic/dic_solvesaphe.F MITgcm-checkpoint68i/pkg/dic/dic_store_fluxco2.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing_init.F MITgcm-checkpoint68i/pkg/dic/dic_tr_register.F MITgcm-checkpoint68i/pkg/dic/dic_write_pickup.F MITgcm-checkpoint68i/pkg/dic/fe_chem.F MITgcm-checkpoint68i/pkg/dic/insol.F MITgcm-checkpoint68i/pkg/dic/o2_surfforcing.F MITgcm-checkpoint68i/pkg/dic/phos_flux.F MITgcm-checkpoint68i/pkg/down_slope/ MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_OPTIONS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_PARAMS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_SIZE.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_VARS.h MITgcm-checkpoint68i/pkg/down_slope/dwnslp_ad_diff.list MITgcm-checkpoint68i/pkg/down_slope/dwnslp_apply.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_flow.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_rho.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_diagnostics_init.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_fixed.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_varia.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_readparms.F MITgcm-checkpoint68i/pkg/ebm/ MITgcm-checkpoint68i/pkg/ebm/EBM.h MITgcm-checkpoint68i/pkg/ebm/EBM_OPTIONS.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_diff.list MITgcm-checkpoint68i/pkg/ebm/ebm_area_t.F MITgcm-checkpoint68i/pkg/ebm/ebm_atmosphere.F MITgcm-checkpoint68i/pkg/ebm/ebm_driver.F MITgcm-checkpoint68i/pkg/ebm/ebm_ini_vars.F MITgcm-checkpoint68i/pkg/ebm/ebm_load_climatology.F MITgcm-checkpoint68i/pkg/ebm/ebm_readparms.F MITgcm-checkpoint68i/pkg/ebm/ebm_wind_perturb.F MITgcm-checkpoint68i/pkg/ebm/ebm_zonalmean.F MITgcm-checkpoint68i/pkg/ecco/ MITgcm-checkpoint68i/pkg/ecco/ECCO.h MITgcm-checkpoint68i/pkg/ecco/ECCO_OPTIONS.h MITgcm-checkpoint68i/pkg/ecco/ECCO_SIZE.h MITgcm-checkpoint68i/pkg/ecco/cost_averagesfields.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesflags.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesgeneric.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesinit.F MITgcm-checkpoint68i/pkg/ecco/cost_bp_read.F MITgcm-checkpoint68i/pkg/ecco/cost_forcing.F MITgcm-checkpoint68i/pkg/ecco/cost_gencal.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_all.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_assignperiod.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_boxmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_bpv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_customize.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_glbmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_moc.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_seaicev4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sshv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sstv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_transp.F MITgcm-checkpoint68i/pkg/ecco/cost_generic.F MITgcm-checkpoint68i/pkg/ecco/cost_genread.F MITgcm-checkpoint68i/pkg/ecco/cost_hyd.F MITgcm-checkpoint68i/pkg/ecco/cost_internal_params.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs_ageos.F MITgcm-checkpoint68i/pkg/ecco/cost_obcse.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsn.F MITgcm-checkpoint68i/pkg/ecco/cost_obcss.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsvol.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsw.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read_yd.F MITgcm-checkpoint68i/pkg/ecco/cost_ssh.F MITgcm-checkpoint68i/pkg/ecco/ecco_ad.flow MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_diff.list MITgcm-checkpoint68i/pkg/ecco/ecco_check.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost.h MITgcm-checkpoint68i/pkg/ecco/ecco_cost_driver.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_final.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_barfiles.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_weights.F MITgcm-checkpoint68i/pkg/ecco/ecco_diagnostics_init.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_local_params.h MITgcm-checkpoint68i/pkg/ecco/ecco_phys.F MITgcm-checkpoint68i/pkg/ecco/ecco_readparms.F MITgcm-checkpoint68i/pkg/ecco/ecco_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_toolbox.F MITgcm-checkpoint68i/pkg/ecco/stergloh_output.F MITgcm-checkpoint68i/pkg/embed_files/ MITgcm-checkpoint68i/pkg/embed_files/EMBED_FILES_OPTIONS.h MITgcm-checkpoint68i/pkg/embed_files/README.txt MITgcm-checkpoint68i/pkg/embed_files/decode_files.c MITgcm-checkpoint68i/pkg/embed_files/embed_files_init.F MITgcm-checkpoint68i/pkg/exch2/ MITgcm-checkpoint68i/pkg/exch2/Makefile MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_BUFFER.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_PARAMS.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_SIZE.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_TOPOLOGY.h MITgcm-checkpoint68i/pkg/exch2/W2_OPTIONS.h MITgcm-checkpoint68i/pkg/exch2/exch2.flow MITgcm-checkpoint68i/pkg/exch2/exch2_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_diff.list MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_check_depths.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_scal_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_uv_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_s3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_sm_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_agrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_cgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_z_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/w2_cumulsum_z_tile.F MITgcm-checkpoint68i/pkg/exch2/w2_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_eeboot.F MITgcm-checkpoint68i/pkg/exch2/w2_map_procs.F MITgcm-checkpoint68i/pkg/exch2/w2_print_comm_sequence.F MITgcm-checkpoint68i/pkg/exch2/w2_print_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_readparms.F MITgcm-checkpoint68i/pkg/exch2/w2_set_cs6_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_f2f_index.F MITgcm-checkpoint68i/pkg/exch2/w2_set_gen_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_cumsum.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_tiles.F MITgcm-checkpoint68i/pkg/exch2/w2_set_myown_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_single_facet.F MITgcm-checkpoint68i/pkg/exch2/w2_set_tile2tiles.F MITgcm-checkpoint68i/pkg/exf/ MITgcm-checkpoint68i/pkg/exf/EXF_CONSTANTS.h MITgcm-checkpoint68i/pkg/exf/EXF_FIELDS.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_PARAM.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_SIZE.h MITgcm-checkpoint68i/pkg/exf/EXF_OPTIONS.h MITgcm-checkpoint68i/pkg/exf/EXF_PARAM.h MITgcm-checkpoint68i/pkg/exf/TODO.txt MITgcm-checkpoint68i/pkg/exf/exf_ad.flow MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_diff.list MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots__g.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots_ad.F MITgcm-checkpoint68i/pkg/exf/exf_bulkformulae.F MITgcm-checkpoint68i/pkg/exf/exf_check.F MITgcm-checkpoint68i/pkg/exf/exf_check_range.F MITgcm-checkpoint68i/pkg/exf/exf_description.tex MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_fill.F MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_init.F MITgcm-checkpoint68i/pkg/exf/exf_filter_rl.F MITgcm-checkpoint68i/pkg/exf/exf_getclim.F MITgcm-checkpoint68i/pkg/exf/exf_getffield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getffieldrec.F MITgcm-checkpoint68i/pkg/exf/exf_getffields.F MITgcm-checkpoint68i/pkg/exf/exf_getfield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getforcing.F MITgcm-checkpoint68i/pkg/exf/exf_getmonthsrec.F MITgcm-checkpoint68i/pkg/exf/exf_getsurfacefluxes.F MITgcm-checkpoint68i/pkg/exf/exf_getyearlyfieldname.F MITgcm-checkpoint68i/pkg/exf/exf_init_fixed.F MITgcm-checkpoint68i/pkg/exf/exf_init_fld.F MITgcm-checkpoint68i/pkg/exf/exf_init_interp.F MITgcm-checkpoint68i/pkg/exf/exf_init_varia.F MITgcm-checkpoint68i/pkg/exf/exf_interp.F MITgcm-checkpoint68i/pkg/exf/exf_interp_read.F MITgcm-checkpoint68i/pkg/exf/exf_interp_uv.F MITgcm-checkpoint68i/pkg/exf/exf_interpolate.F MITgcm-checkpoint68i/pkg/exf/exf_mapfields.F MITgcm-checkpoint68i/pkg/exf/exf_monitor.F MITgcm-checkpoint68i/pkg/exf/exf_monitor_ad.F MITgcm-checkpoint68i/pkg/exf/exf_radiation.F MITgcm-checkpoint68i/pkg/exf/exf_readparms.F MITgcm-checkpoint68i/pkg/exf/exf_set_fld.F MITgcm-checkpoint68i/pkg/exf/exf_set_gen.F MITgcm-checkpoint68i/pkg/exf/exf_set_obcs.F MITgcm-checkpoint68i/pkg/exf/exf_set_uv.F MITgcm-checkpoint68i/pkg/exf/exf_summary.F MITgcm-checkpoint68i/pkg/exf/exf_swapffields.F MITgcm-checkpoint68i/pkg/exf/exf_weight_sfx_diags.F MITgcm-checkpoint68i/pkg/exf/exf_wind.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle_table.F MITgcm-checkpoint68i/pkg/fizhi/ MITgcm-checkpoint68i/pkg/fizhi/AtoC.F MITgcm-checkpoint68i/pkg/fizhi/CtoA.F MITgcm-checkpoint68i/pkg/fizhi/FIZHI_OPTIONS.h MITgcm-checkpoint68i/pkg/fizhi/cah-dat.h MITgcm-checkpoint68i/pkg/fizhi/cai-dat.h MITgcm-checkpoint68i/pkg/fizhi/chronos.h MITgcm-checkpoint68i/pkg/fizhi/co2-tran3.h MITgcm-checkpoint68i/pkg/fizhi/do_fizhi.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_SHP.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_alarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_chemistry_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_clockstuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagalarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagnostics_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_driver.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_earth_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_fillnegs.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_gwdrag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_chem.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_fixed.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vars.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_veg.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vegsurftiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_io_comms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_lsm.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_lwrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mnc_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_moist.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mpistuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_ocean_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_rayleigh.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_read_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readparms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readwrite_vegtiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_step_diag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_swrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_tendency_apply.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_turb.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_update_time.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_utils.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_wrapper.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_datetime.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_state.F MITgcm-checkpoint68i/pkg/fizhi/getcon.F MITgcm-checkpoint68i/pkg/fizhi/getpwhere.F MITgcm-checkpoint68i/pkg/fizhi/h2o-tran3.h MITgcm-checkpoint68i/pkg/fizhi/o3-tran3.h MITgcm-checkpoint68i/pkg/fizhi/sibber.h MITgcm-checkpoint68i/pkg/fizhi/slprs.F MITgcm-checkpoint68i/pkg/fizhi/snwmid.h MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_corr.F MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_fg.F MITgcm-checkpoint68i/pkg/fizhi/step_physics.F MITgcm-checkpoint68i/pkg/fizhi/update_chemistry_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_earth_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_ocean_exports.F MITgcm-checkpoint68i/pkg/flt/ MITgcm-checkpoint68i/pkg/flt/FLT.h MITgcm-checkpoint68i/pkg/flt/FLT_BUFF.h MITgcm-checkpoint68i/pkg/flt/FLT_OPTIONS.h MITgcm-checkpoint68i/pkg/flt/FLT_SIZE.h MITgcm-checkpoint68i/pkg/flt/README.flt MITgcm-checkpoint68i/pkg/flt/exch2_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch2_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/exch_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/flt_down.F MITgcm-checkpoint68i/pkg/flt/flt_exch2.F MITgcm-checkpoint68i/pkg/flt/flt_exchg.F MITgcm-checkpoint68i/pkg/flt/flt_init_fixed.F MITgcm-checkpoint68i/pkg/flt/flt_init_varia.F MITgcm-checkpoint68i/pkg/flt/flt_interp_linear.F MITgcm-checkpoint68i/pkg/flt/flt_main.F MITgcm-checkpoint68i/pkg/flt/flt_mapping.F MITgcm-checkpoint68i/pkg/flt/flt_readparms.F MITgcm-checkpoint68i/pkg/flt/flt_runga2.F MITgcm-checkpoint68i/pkg/flt/flt_runga4.F MITgcm-checkpoint68i/pkg/flt/flt_traj.F MITgcm-checkpoint68i/pkg/flt/flt_up.F MITgcm-checkpoint68i/pkg/flt/flt_write_pickup.F MITgcm-checkpoint68i/pkg/frazil/ MITgcm-checkpoint68i/pkg/frazil/FRAZIL.h MITgcm-checkpoint68i/pkg/frazil/FRAZIL_OPTIONS.h MITgcm-checkpoint68i/pkg/frazil/frazil_ad.flow MITgcm-checkpoint68i/pkg/frazil/frazil_ad_diff.list MITgcm-checkpoint68i/pkg/frazil/frazil_calc_rhs.F MITgcm-checkpoint68i/pkg/frazil/frazil_description.tex MITgcm-checkpoint68i/pkg/frazil/frazil_diagnostics_init.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_fixed.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_varia.F MITgcm-checkpoint68i/pkg/frazil/frazil_tendency_apply.F MITgcm-checkpoint68i/pkg/gchem/ MITgcm-checkpoint68i/pkg/gchem/GCHEM.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_FIELDS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_OPTIONS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_SIZE.h MITgcm-checkpoint68i/pkg/gchem/gchem_ad_diff.list MITgcm-checkpoint68i/pkg/gchem/gchem_add_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_calc_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_check.F MITgcm-checkpoint68i/pkg/gchem/gchem_diagnostics_init.F MITgcm-checkpoint68i/pkg/gchem/gchem_fields_load.F MITgcm-checkpoint68i/pkg/gchem/gchem_forcing_sep.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_fixed.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_vari.F MITgcm-checkpoint68i/pkg/gchem/gchem_output.F MITgcm-checkpoint68i/pkg/gchem/gchem_readparms.F MITgcm-checkpoint68i/pkg/gchem/gchem_surfmean.F MITgcm-checkpoint68i/pkg/gchem/gchem_tr_register.F MITgcm-checkpoint68i/pkg/gchem/gchem_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/ MITgcm-checkpoint68i/pkg/generic_advdiff/GAD.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_FLUX_LIMITER.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_OPTIONS.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_SOM_VARS.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_diff.list MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advection.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advscheme.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_calc_rhs.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_check.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_del2.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_init.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_state.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_exch_som.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_implicit_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_fixed.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_varia.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_plm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_read_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_advect.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_exchanges.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_fill_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_lim_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_prep_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3c4_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/generic_advdiff.tex MITgcm-checkpoint68i/pkg/generic_advdiff/salt_fill.F MITgcm-checkpoint68i/pkg/ggl90/ MITgcm-checkpoint68i/pkg/ggl90/GGL90.h MITgcm-checkpoint68i/pkg/ggl90/GGL90_OPTIONS.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_diff.list MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_diff.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_visc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_check.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_diagnostics_init.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_exchanges.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_idemix.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_fixed.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_varia.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_output.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_read_pickup.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_readparms.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/ MITgcm-checkpoint68i/pkg/gmredi/GMREDI.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_OPTIONS.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_TAVE.h MITgcm-checkpoint68i/pkg/gmredi/README_ADJOINT MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad.flow MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad_diff.list MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_bates_k.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_diff.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_eigs.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_b.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_bvp.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_qgleith.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_tensor.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_urms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_check.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_description.tex MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_fill.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_impl.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_do_exch.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_fixed.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_varia.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_mnc_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_output.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_read_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_readparms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_residual_flow.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_rtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_limit.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_psi.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_xtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_ytransport.F MITgcm-checkpoint68i/pkg/gmredi/submeso_calc_psi.F MITgcm-checkpoint68i/pkg/grdchk/ MITgcm-checkpoint68i/pkg/grdchk/GRDCHK_OPTIONS.h MITgcm-checkpoint68i/pkg/grdchk/grdchk.h MITgcm-checkpoint68i/pkg/grdchk/grdchk_check.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_description.tex MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_obcs_mask.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_position.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getadxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_init.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_loc.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_main.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_print.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_readparms.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_setxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_summary.F MITgcm-checkpoint68i/pkg/gridalt/ MITgcm-checkpoint68i/pkg/gridalt/GRIDALT_OPTIONS.h MITgcm-checkpoint68i/pkg/gridalt/dyn2phys.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_diagnostics_init.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_initialise.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_mapping.h MITgcm-checkpoint68i/pkg/gridalt/gridalt_update.F MITgcm-checkpoint68i/pkg/gridalt/make_phys_grid.F MITgcm-checkpoint68i/pkg/gridalt/phys2dyn.F MITgcm-checkpoint68i/pkg/icefront/ MITgcm-checkpoint68i/pkg/icefront/ICEFRONT.h MITgcm-checkpoint68i/pkg/icefront/ICEFRONT_OPTIONS.h MITgcm-checkpoint68i/pkg/icefront/ICFSymbol.txt MITgcm-checkpoint68i/pkg/icefront/icefront_check.F MITgcm-checkpoint68i/pkg/icefront/icefront_description.tex MITgcm-checkpoint68i/pkg/icefront/icefront_diagnostics_init.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_fixed.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_varia.F MITgcm-checkpoint68i/pkg/icefront/icefront_readparms.F MITgcm-checkpoint68i/pkg/icefront/icefront_tendency_apply.F MITgcm-checkpoint68i/pkg/icefront/icefront_thermodynamics.F MITgcm-checkpoint68i/pkg/kl10/ MITgcm-checkpoint68i/pkg/kl10/KL10.h MITgcm-checkpoint68i/pkg/kl10/KL10_DIAGS.h MITgcm-checkpoint68i/pkg/kl10/KL10_OPTIONS.h MITgcm-checkpoint68i/pkg/kl10/KL10_TAVE.h MITgcm-checkpoint68i/pkg/kl10/kl10_calc.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_diff.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_visc.F MITgcm-checkpoint68i/pkg/kl10/kl10_check.F MITgcm-checkpoint68i/pkg/kl10/kl10_diagnostics_init.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_fixed.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_varia.F MITgcm-checkpoint68i/pkg/kl10/kl10_output.F MITgcm-checkpoint68i/pkg/kl10/kl10_readparms.F MITgcm-checkpoint68i/pkg/kpp/ MITgcm-checkpoint68i/pkg/kpp/KPP.h MITgcm-checkpoint68i/pkg/kpp/KPP_OPTIONS.h MITgcm-checkpoint68i/pkg/kpp/KPP_PARAMS.h MITgcm-checkpoint68i/pkg/kpp/KPP_TAVE.h MITgcm-checkpoint68i/pkg/kpp/kpp_ad_diff.list MITgcm-checkpoint68i/pkg/kpp/kpp_calc.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_t.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_visc.F MITgcm-checkpoint68i/pkg/kpp/kpp_check.F MITgcm-checkpoint68i/pkg/kpp/kpp_description.tex MITgcm-checkpoint68i/pkg/kpp/kpp_diagnostics_init.F MITgcm-checkpoint68i/pkg/kpp/kpp_do_exch.F MITgcm-checkpoint68i/pkg/kpp/kpp_forcing_surf.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_fixed.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_varia.F MITgcm-checkpoint68i/pkg/kpp/kpp_output.F MITgcm-checkpoint68i/pkg/kpp/kpp_readparms.F MITgcm-checkpoint68i/pkg/kpp/kpp_routines.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_t.F MITgcm-checkpoint68i/pkg/land/ MITgcm-checkpoint68i/pkg/land/LAND_OPTIONS.h MITgcm-checkpoint68i/pkg/land/LAND_PARAMS.h MITgcm-checkpoint68i/pkg/land/LAND_SIZE.h MITgcm-checkpoint68i/pkg/land/LAND_TAVE.h MITgcm-checkpoint68i/pkg/land/LAND_VARS.h MITgcm-checkpoint68i/pkg/land/land_albedo.F MITgcm-checkpoint68i/pkg/land/land_check.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_init.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_state.F MITgcm-checkpoint68i/pkg/land/land_do_diags.F MITgcm-checkpoint68i/pkg/land/land_impl_temp.F MITgcm-checkpoint68i/pkg/land/land_ini_vars.F MITgcm-checkpoint68i/pkg/land/land_init_fixed.F MITgcm-checkpoint68i/pkg/land/land_mnc_init.F MITgcm-checkpoint68i/pkg/land/land_monitor.F MITgcm-checkpoint68i/pkg/land/land_output.F MITgcm-checkpoint68i/pkg/land/land_read_pickup.F MITgcm-checkpoint68i/pkg/land/land_readparms.F MITgcm-checkpoint68i/pkg/land/land_stepfwd.F MITgcm-checkpoint68i/pkg/land/land_write_pickup.F MITgcm-checkpoint68i/pkg/layers/ MITgcm-checkpoint68i/pkg/layers/LAYERS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_OPTIONS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_SIZE.h MITgcm-checkpoint68i/pkg/layers/layers_ad_diff.list MITgcm-checkpoint68i/pkg/layers/layers_calc.F MITgcm-checkpoint68i/pkg/layers/layers_check.F MITgcm-checkpoint68i/pkg/layers/layers_diagnostics_init.F MITgcm-checkpoint68i/pkg/layers/layers_fluxcalc.F MITgcm-checkpoint68i/pkg/layers/layers_init_fixed.F MITgcm-checkpoint68i/pkg/layers/layers_init_varia.F MITgcm-checkpoint68i/pkg/layers/layers_mnc_init.F MITgcm-checkpoint68i/pkg/layers/layers_output.F MITgcm-checkpoint68i/pkg/layers/layers_readparms.F MITgcm-checkpoint68i/pkg/layers/layers_save.F MITgcm-checkpoint68i/pkg/layers/layers_thermodynamics.F MITgcm-checkpoint68i/pkg/layers/layers_wsurf_tr.F MITgcm-checkpoint68i/pkg/longstep/ MITgcm-checkpoint68i/pkg/longstep/LONGSTEP.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_OPTIONS.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_PARAMS.h MITgcm-checkpoint68i/pkg/longstep/README MITgcm-checkpoint68i/pkg/longstep/longstep_average.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_check_iters.F MITgcm-checkpoint68i/pkg/longstep/longstep_correction_step.F MITgcm-checkpoint68i/pkg/longstep/longstep_diagnostics_init.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_rs.F MITgcm-checkpoint68i/pkg/longstep/longstep_forcing_surf.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_fixed.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_varia.F MITgcm-checkpoint68i/pkg/longstep/longstep_readparms.F MITgcm-checkpoint68i/pkg/longstep/longstep_reset_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_thermodynamics.F MITgcm-checkpoint68i/pkg/matrix/ MITgcm-checkpoint68i/pkg/matrix/MATRIX.h MITgcm-checkpoint68i/pkg/matrix/MATRIX_OPTIONS.h MITgcm-checkpoint68i/pkg/matrix/matrix_init_varia.F MITgcm-checkpoint68i/pkg/matrix/matrix_output.F MITgcm-checkpoint68i/pkg/matrix/matrix_readparms.F MITgcm-checkpoint68i/pkg/matrix/matrix_store_tendency.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_grid.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_tendency.F MITgcm-checkpoint68i/pkg/mdsio/ MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_3D.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_WH.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_OPTIONS.h MITgcm-checkpoint68i/pkg/mdsio/mdsio_ad.flow MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertorl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_check4file.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_facef_read.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_readvec_loc.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_segxtorx_2d.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_metafiles.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writelocal.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writevec_loc.F MITgcm-checkpoint68i/pkg/mnc/ MITgcm-checkpoint68i/pkg/mnc/CPP_OPTIONS.t MITgcm-checkpoint68i/pkg/mnc/MNC_BUFF.h MITgcm-checkpoint68i/pkg/mnc/MNC_COMMON.h MITgcm-checkpoint68i/pkg/mnc/MNC_OPTIONS.h MITgcm-checkpoint68i/pkg/mnc/MNC_PARAMS.h MITgcm-checkpoint68i/pkg/mnc/MNC_SIZE.h MITgcm-checkpoint68i/pkg/mnc/Makefile MITgcm-checkpoint68i/pkg/mnc/PACKAGES_CONFIG.t MITgcm-checkpoint68i/pkg/mnc/README.txt MITgcm-checkpoint68i/pkg/mnc/SIZE.t MITgcm-checkpoint68i/pkg/mnc/TESTING_README.txt MITgcm-checkpoint68i/pkg/mnc/build_netcdf_stubs MITgcm-checkpoint68i/pkg/mnc/mnc_ad.flow MITgcm-checkpoint68i/pkg/mnc/mnc_create_dir.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_citer.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_cvars.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_fsize.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_missingvals.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_model_attr.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_readwrite.template MITgcm-checkpoint68i/pkg/mnc/mnc_cw_udim.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_write_grid_info.F MITgcm-checkpoint68i/pkg/mnc/mnc_cwrapper.F MITgcm-checkpoint68i/pkg/mnc/mnc_description.tex MITgcm-checkpoint68i/pkg/mnc/mnc_dim.F MITgcm-checkpoint68i/pkg/mnc/mnc_dump.F MITgcm-checkpoint68i/pkg/mnc/mnc_file.F MITgcm-checkpoint68i/pkg/mnc/mnc_grid.F MITgcm-checkpoint68i/pkg/mnc/mnc_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_readparms.F MITgcm-checkpoint68i/pkg/mnc/mnc_test_001.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_002.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_utils.T MITgcm-checkpoint68i/pkg/mnc/mnc_update_time.F MITgcm-checkpoint68i/pkg/mnc/mnc_utils.F MITgcm-checkpoint68i/pkg/mnc/mnc_var.F MITgcm-checkpoint68i/pkg/mnc/parse_local_info MITgcm-checkpoint68i/pkg/mnc/pre-defined_grids.txt MITgcm-checkpoint68i/pkg/mom_common/ MITgcm-checkpoint68i/pkg/mom_common/MOM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_common/MOM_VISC.h MITgcm-checkpoint68i/pkg/mom_common/mom_calc_3d_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_absvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hdiv.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hfacz.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_ke.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_relvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_tension.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_visc.F MITgcm-checkpoint68i/pkg/mom_common/mom_common_ad_diff.list MITgcm-checkpoint68i/pkg/mom_common/mom_diagnostics_init.F MITgcm-checkpoint68i/pkg/mom_common/mom_hdissip.F MITgcm-checkpoint68i/pkg/mom_common/mom_init_fixed.F MITgcm-checkpoint68i/pkg/mom_common/mom_quasihydrostatic.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_uv_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_limit.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_stretch.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_smag_3d.F MITgcm-checkpoint68i/pkg/mom_fluxform/ MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM.h MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_fluxform/mom_calc_rtrans.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform_ad_diff.list MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_uu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_vu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_wu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_del2u.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_yviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_uv_boundary.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_uv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_vv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_wv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_del2v.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_yviscflux.F MITgcm-checkpoint68i/pkg/mom_vecinv/ MITgcm-checkpoint68i/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv_ad_diff.list MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_del2uv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_hdissip.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_vertshear.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_vertshear.F MITgcm-checkpoint68i/pkg/monitor/ MITgcm-checkpoint68i/pkg/monitor/MONITOR.h MITgcm-checkpoint68i/pkg/monitor/MONITOR_OPTIONS.h MITgcm-checkpoint68i/pkg/monitor/mon_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw2.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_description.tex MITgcm-checkpoint68i/pkg/monitor/mon_init.F MITgcm-checkpoint68i/pkg/monitor/mon_ke.F MITgcm-checkpoint68i/pkg/monitor/mon_out.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_set_iounit.F MITgcm-checkpoint68i/pkg/monitor/mon_set_pref.F MITgcm-checkpoint68i/pkg/monitor/mon_solution.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_latbnd_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_surfcor.F MITgcm-checkpoint68i/pkg/monitor/mon_vort3.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rs.F MITgcm-checkpoint68i/pkg/monitor/monitor.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.flow MITgcm-checkpoint68i/pkg/monitor/monitor_description.tex MITgcm-checkpoint68i/pkg/monitor/monitor_g.F MITgcm-checkpoint68i/pkg/my82/ MITgcm-checkpoint68i/pkg/my82/MY82.h MITgcm-checkpoint68i/pkg/my82/MY82_OPTIONS.h MITgcm-checkpoint68i/pkg/my82/my82_calc.F MITgcm-checkpoint68i/pkg/my82/my82_calc_diff.F MITgcm-checkpoint68i/pkg/my82/my82_calc_visc.F MITgcm-checkpoint68i/pkg/my82/my82_check.F MITgcm-checkpoint68i/pkg/my82/my82_diagnostics_init.F MITgcm-checkpoint68i/pkg/my82/my82_init_fixed.F MITgcm-checkpoint68i/pkg/my82/my82_init_varia.F MITgcm-checkpoint68i/pkg/my82/my82_output.F MITgcm-checkpoint68i/pkg/my82/my82_readparms.F MITgcm-checkpoint68i/pkg/my82/my82_ri_number.F MITgcm-checkpoint68i/pkg/mypackage/ MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE.h MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE_OPTIONS.h MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad.flow MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad_diff.list MITgcm-checkpoint68i/pkg/mypackage/mypackage_calc_rhs.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_check.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_description.tex MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_state.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_fixed.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_varia.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_mnc_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_read_pickup.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_readparms.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_tendency_apply.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/ MITgcm-checkpoint68i/pkg/obcs/OBCS_FIELDS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_GRID.h MITgcm-checkpoint68i/pkg/obcs/OBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PARAMS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PTRACERS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_SEAICE.h MITgcm-checkpoint68i/pkg/obcs/ORLANSKI.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad.flow MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_diff.list MITgcm-checkpoint68i/pkg/obcs/obcs_add_tides.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_eta.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ptracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_r_star.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_seaice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_surf_dr.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ts.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uv.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_w.F MITgcm-checkpoint68i/pkg/obcs/obcs_balance_flow.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc_stevens.F MITgcm-checkpoint68i/pkg/obcs/obcs_check.F MITgcm-checkpoint68i/pkg/obcs/obcs_check_depths.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_description.tex MITgcm-checkpoint68i/pkg/obcs/obcs_diag_balance.F MITgcm-checkpoint68i/pkg/obcs/obcs_exchanges.F MITgcm-checkpoint68i/pkg/obcs/obcs_exf_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_fields_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_fixed.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_variables.F MITgcm-checkpoint68i/pkg/obcs/obcs_mon_stats.F MITgcm-checkpoint68i/pkg/obcs/obcs_monitor.F MITgcm-checkpoint68i/pkg/obcs/obcs_output.F MITgcm-checkpoint68i/pkg/obcs/obcs_prescribe_read.F MITgcm-checkpoint68i/pkg/obcs/obcs_read_pickup.F MITgcm-checkpoint68i/pkg/obcs/obcs_readparms.F MITgcm-checkpoint68i/pkg/obcs/obcs_save_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_seaice_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_set_connect.F MITgcm-checkpoint68i/pkg/obcs/obcs_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_u1_adv_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/orlanski_east.F MITgcm-checkpoint68i/pkg/obcs/orlanski_init.F MITgcm-checkpoint68i/pkg/obcs/orlanski_north.F MITgcm-checkpoint68i/pkg/obcs/orlanski_south.F MITgcm-checkpoint68i/pkg/obcs/orlanski_west.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_TAVE.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCNCPL.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCN_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_apply_import.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_check_cplconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_diags.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_ocnconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_atmconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_store_my_data.F MITgcm-checkpoint68i/pkg/offline/ MITgcm-checkpoint68i/pkg/offline/OFFLINE.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_OPTIONS.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_SWITCH.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_diff.list MITgcm-checkpoint68i/pkg/offline/offline_check.F MITgcm-checkpoint68i/pkg/offline/offline_fields_load.F MITgcm-checkpoint68i/pkg/offline/offline_get_diffus.F MITgcm-checkpoint68i/pkg/offline/offline_init_varia.F MITgcm-checkpoint68i/pkg/offline/offline_readparms.F MITgcm-checkpoint68i/pkg/offline/offline_reset_parms.F MITgcm-checkpoint68i/pkg/openad/ MITgcm-checkpoint68i/pkg/openad/OPENAD_OPTIONS.h MITgcm-checkpoint68i/pkg/openad/ad_s_different_multiple.F MITgcm-checkpoint68i/pkg/openad/ad_s_ifnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_ilnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_mds_reclen.F MITgcm-checkpoint68i/pkg/openad/externalDummies.F MITgcm-checkpoint68i/pkg/openad/findAndDiff.bash MITgcm-checkpoint68i/pkg/openad/inner_do_loop.F MITgcm-checkpoint68i/pkg/openad/openad_ad_diff.list MITgcm-checkpoint68i/pkg/openad/openad_checkpointInit.F MITgcm-checkpoint68i/pkg/openad/openad_dumpAdjoint.F MITgcm-checkpoint68i/pkg/openad/seawater.F MITgcm-checkpoint68i/pkg/openad/the_model_main.F MITgcm-checkpoint68i/pkg/opps/ MITgcm-checkpoint68i/pkg/opps/OPPS.h MITgcm-checkpoint68i/pkg/opps/OPPS_OPTIONS.h MITgcm-checkpoint68i/pkg/opps/opps_calc.F MITgcm-checkpoint68i/pkg/opps/opps_check.F MITgcm-checkpoint68i/pkg/opps/opps_init.F MITgcm-checkpoint68i/pkg/opps/opps_interface.F MITgcm-checkpoint68i/pkg/opps/opps_readparms.F MITgcm-checkpoint68i/pkg/pkg_depend MITgcm-checkpoint68i/pkg/pkg_groups MITgcm-checkpoint68i/pkg/pp81/ MITgcm-checkpoint68i/pkg/pp81/PP81.h MITgcm-checkpoint68i/pkg/pp81/PP81_OPTIONS.h MITgcm-checkpoint68i/pkg/pp81/pp81_calc.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_diff.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_visc.F MITgcm-checkpoint68i/pkg/pp81/pp81_check.F MITgcm-checkpoint68i/pkg/pp81/pp81_diagnostics_init.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_fixed.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_varia.F MITgcm-checkpoint68i/pkg/pp81/pp81_output.F MITgcm-checkpoint68i/pkg/pp81/pp81_readparms.F MITgcm-checkpoint68i/pkg/pp81/pp81_ri_number.F MITgcm-checkpoint68i/pkg/profiles/ MITgcm-checkpoint68i/pkg/profiles/PROFILES_OPTIONS.h MITgcm-checkpoint68i/pkg/profiles/PROFILES_SIZE.h MITgcm-checkpoint68i/pkg/profiles/active_file_control_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.flow MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_ad.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_g.F MITgcm-checkpoint68i/pkg/profiles/cost_profiles.F MITgcm-checkpoint68i/pkg/profiles/profiles.flow MITgcm-checkpoint68i/pkg/profiles/profiles.h MITgcm-checkpoint68i/pkg/profiles/profiles_ad_diff.list MITgcm-checkpoint68i/pkg/profiles/profiles_findunit.F MITgcm-checkpoint68i/pkg/profiles/profiles_ini_io.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_fixed.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_ncfile.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_varia.F MITgcm-checkpoint68i/pkg/profiles/profiles_inloop.F MITgcm-checkpoint68i/pkg/profiles/profiles_interp.F MITgcm-checkpoint68i/pkg/profiles/profiles_readparms.F MITgcm-checkpoint68i/pkg/profiles/profiles_readvector.F MITgcm-checkpoint68i/pkg/ptracers/ MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_FIELDS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_MOD.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_OPTIONS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_PARAMS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_SIZE.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_START.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_TAVE.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad.flow MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_diff.list MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_dump.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_adcommon.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_apply_forcing.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_calc_wsurf_tr.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_convect.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_debug.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_data_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_fields_blocking_exch.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_forcing_surf.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_fixed.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_varia.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_integrate.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_mnc_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor_ad.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_output.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_read_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_readparms.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_reset.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_set_iolabel.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_switch_onoff.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_turnoff_io.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_zonal_filt_apply.F MITgcm-checkpoint68i/pkg/rbcs/ MITgcm-checkpoint68i/pkg/rbcs/RBCS_FIELDS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_PARAMS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_SIZE.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_diff.list MITgcm-checkpoint68i/pkg/rbcs/rbcs_add_tendency.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_fields_load.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_fixed.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_varia.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_readparms.F MITgcm-checkpoint68i/pkg/regrid/ MITgcm-checkpoint68i/pkg/regrid/Makefile MITgcm-checkpoint68i/pkg/regrid/REGRID.h MITgcm-checkpoint68i/pkg/regrid/REGRID_OPTIONS.h MITgcm-checkpoint68i/pkg/regrid/REGRID_SIZE.h MITgcm-checkpoint68i/pkg/regrid/regrid_check.F MITgcm-checkpoint68i/pkg/regrid/regrid_description.tex MITgcm-checkpoint68i/pkg/regrid/regrid_init_fixed.F MITgcm-checkpoint68i/pkg/regrid/regrid_init_varia.F MITgcm-checkpoint68i/pkg/regrid/regrid_mnc_init.F MITgcm-checkpoint68i/pkg/regrid/regrid_readparms.F MITgcm-checkpoint68i/pkg/regrid/regrid_scalar_out.template MITgcm-checkpoint68i/pkg/runclock/ MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK.h MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK_OPTIONS.h MITgcm-checkpoint68i/pkg/runclock/runclock_check.F MITgcm-checkpoint68i/pkg/runclock/runclock_continue.F MITgcm-checkpoint68i/pkg/runclock/runclock_gettime.F MITgcm-checkpoint68i/pkg/runclock/runclock_init.F MITgcm-checkpoint68i/pkg/runclock/runclock_readparms.F MITgcm-checkpoint68i/pkg/rw/ MITgcm-checkpoint68i/pkg/rw/RW_MFLDS.h MITgcm-checkpoint68i/pkg/rw/RW_OPTIONS.h MITgcm-checkpoint68i/pkg/rw/get_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/read_mflds.F MITgcm-checkpoint68i/pkg/rw/read_rec.F MITgcm-checkpoint68i/pkg/rw/rw_ad.flow MITgcm-checkpoint68i/pkg/rw/rw_ad_diff.list MITgcm-checkpoint68i/pkg/rw/rw_get_suffix.F MITgcm-checkpoint68i/pkg/rw/set_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/write_local_rl.F MITgcm-checkpoint68i/pkg/rw/write_local_rs.F MITgcm-checkpoint68i/pkg/rw/write_rec.F MITgcm-checkpoint68i/pkg/salt_plume/ MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME.h MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME_OPTIONS.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_diff.list MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_apply.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_calc_depth.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_check.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_description.tex MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_fill.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_do_exch.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_forcing_surf.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_frac.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_fixed.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_varia.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_mnc_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_readparms.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_s.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_t.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_volfrac.F MITgcm-checkpoint68i/pkg/sbo/ MITgcm-checkpoint68i/pkg/sbo/SBO.h MITgcm-checkpoint68i/pkg/sbo/SBO_OPTIONS.h MITgcm-checkpoint68i/pkg/sbo/sbo_calc.F MITgcm-checkpoint68i/pkg/sbo/sbo_check.F MITgcm-checkpoint68i/pkg/sbo/sbo_description.tex MITgcm-checkpoint68i/pkg/sbo/sbo_output.F MITgcm-checkpoint68i/pkg/sbo/sbo_readparms.F MITgcm-checkpoint68i/pkg/sbo/sbo_rho.F MITgcm-checkpoint68i/pkg/seaice/ MITgcm-checkpoint68i/pkg/seaice/SEAICE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_COST.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_OPTIONS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_PARAMS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_SIZE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TAVE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TRACER.h MITgcm-checkpoint68i/pkg/seaice/advect.F MITgcm-checkpoint68i/pkg/seaice/cost_ice_test.F MITgcm-checkpoint68i/pkg/seaice/diffus.F MITgcm-checkpoint68i/pkg/seaice/dynsolver.F MITgcm-checkpoint68i/pkg/seaice/lsr.F MITgcm-checkpoint68i/pkg/seaice/ostres.F MITgcm-checkpoint68i/pkg/seaice/seaice.flow MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_diff.list MITgcm-checkpoint68i/pkg/seaice/seaice_ad_dump.F MITgcm-checkpoint68i/pkg/seaice/seaice_advdiff.F MITgcm-checkpoint68i/pkg/seaice/seaice_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_bottomdrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_budget_ocean.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_ice_strength.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_lhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_residual.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_rhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_strainrates.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_stressdiv.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_viscosities.F MITgcm-checkpoint68i/pkg/seaice/seaice_check.F MITgcm-checkpoint68i/pkg/seaice/seaice_check_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_areasst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_concentration.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_driver.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_export.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_final.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sensi.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sss.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_weights.F MITgcm-checkpoint68i/pkg/seaice/seaice_ctrl_map_ini.F MITgcm-checkpoint68i/pkg/seaice/seaice_description.tex MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_state.F MITgcm-checkpoint68i/pkg/seaice/seaice_diffusion.F MITgcm-checkpoint68i/pkg/seaice/seaice_do_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_dynsolver.F MITgcm-checkpoint68i/pkg/seaice/seaice_evp.F MITgcm-checkpoint68i/pkg/seaice/seaice_fake.F MITgcm-checkpoint68i/pkg/seaice/seaice_fgmres.F MITgcm-checkpoint68i/pkg/seaice/seaice_freedrift.F MITgcm-checkpoint68i/pkg/seaice/seaice_get_dynforcing.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth_adx.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_redist.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_remap.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_sum.F MITgcm-checkpoint68i/pkg/seaice/seaice_jacvec.F MITgcm-checkpoint68i/pkg/seaice/seaice_jfnk.F MITgcm-checkpoint68i/pkg/seaice/seaice_krylov.F MITgcm-checkpoint68i/pkg/seaice/seaice_lsr.F MITgcm-checkpoint68i/pkg/seaice/seaice_map_thsice.F MITgcm-checkpoint68i/pkg/seaice/seaice_mnc_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_model.F MITgcm-checkpoint68i/pkg/seaice/seaice_mom_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor_ad.F MITgcm-checkpoint68i/pkg/seaice/seaice_obcs_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_ocean_stress.F MITgcm-checkpoint68i/pkg/seaice/seaice_oceandrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_preconditioner.F MITgcm-checkpoint68i/pkg/seaice/seaice_prepare_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_read_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_readparms.F MITgcm-checkpoint68i/pkg/seaice/seaice_reg_ridge.F MITgcm-checkpoint68i/pkg/seaice/seaice_solve4temp.F MITgcm-checkpoint68i/pkg/seaice/seaice_summary.F MITgcm-checkpoint68i/pkg/seaice/seaice_tracer_phys.F MITgcm-checkpoint68i/pkg/seaice/seaice_turnoff_io.F MITgcm-checkpoint68i/pkg/seaice/seaice_write_pickup.F MITgcm-checkpoint68i/pkg/shap_filt/ MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT.h MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_ad_diff.list MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_ts.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_uv.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_computvort.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_diagnostics_init.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_init_fixed.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_readparms.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_relvort3.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracerold.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_u.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2c.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_v.F MITgcm-checkpoint68i/pkg/shelfice/ MITgcm-checkpoint68i/pkg/shelfice/SHELFICE.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_COST.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_OPTIONS.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_TAVE.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_diff.list MITgcm-checkpoint68i/pkg/shelfice/shelfice_check.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_accumulate.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_final.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_shifwflx.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_diagnostics_drag.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing_surf.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_depths.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_fixed.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_varia.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mask_seaice.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mnc_init.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_output.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_read_pickup.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_readparms.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_c_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_calc_w.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_state.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_uv_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remeshing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_step_icemass.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_thermodynamics.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_u_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_v_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_write_pickup.F MITgcm-checkpoint68i/pkg/showflops/ MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_INIT.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_OPTIONS.h MITgcm-checkpoint68i/pkg/showflops/showflops_ad.flow MITgcm-checkpoint68i/pkg/showflops/showflops_init.F MITgcm-checkpoint68i/pkg/showflops/showflops_inloop.F MITgcm-checkpoint68i/pkg/showflops/showflops_insolve.F MITgcm-checkpoint68i/pkg/smooth/ MITgcm-checkpoint68i/pkg/smooth/SMOOTH.h MITgcm-checkpoint68i/pkg/smooth/SMOOTH_OPTIONS.h MITgcm-checkpoint68i/pkg/smooth/smooth2d.F MITgcm-checkpoint68i/pkg/smooth/smooth3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_ad_diff.list MITgcm-checkpoint68i/pkg/smooth/smooth_basic2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_check.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2dw.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_description.tex MITgcm-checkpoint68i/pkg/smooth/smooth_diff2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_diff3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_hetero2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_impldiff.F MITgcm-checkpoint68i/pkg/smooth/smooth_init2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_fixed.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_varia.F MITgcm-checkpoint68i/pkg/smooth/smooth_readparms.F MITgcm-checkpoint68i/pkg/smooth/smooth_rhs.F MITgcm-checkpoint68i/pkg/sphere/ MITgcm-checkpoint68i/pkg/sphere/exch_all_2d_rl.F MITgcm-checkpoint68i/pkg/sphere/sphere.F MITgcm-checkpoint68i/pkg/sphere/sphere.h MITgcm-checkpoint68i/pkg/sphere/sphere_ad.flow MITgcm-checkpoint68i/pkg/sphere/sphere_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/ MITgcm-checkpoint68i/pkg/streamice/STREAMICE.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_ADV.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_BDRY.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CG.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CTRL_FLUX.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_OPTIONS.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_PETSC.h MITgcm-checkpoint68i/pkg/streamice/adstreamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/adstreamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_prime_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice_prime.F MITgcm-checkpoint68i/pkg/streamice/phi_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/slope_limiter.F MITgcm-checkpoint68i/pkg/streamice/streamice.flow MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_x.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_y.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_front.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_2dtracer.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_thickness.F MITgcm-checkpoint68i/pkg/streamice/streamice_apply_flux_ctrl.F MITgcm-checkpoint68i/pkg/streamice/streamice_bstress_exponent.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_functions.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_matfree.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_wrapper.F MITgcm-checkpoint68i/pkg/streamice/streamice_check.F MITgcm-checkpoint68i/pkg/streamice/streamice_cost_surf_accum.F MITgcm-checkpoint68i/pkg/streamice/streamice_diagnostics_state.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_fd.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_ppm.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump_ad.F MITgcm-checkpoint68i/pkg/streamice/streamice_fields_load.F MITgcm-checkpoint68i/pkg/streamice/streamice_finalize_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_forced_buttress.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_fp_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_fp_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_diagnostics.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_fixed.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_varia.F MITgcm-checkpoint68i/pkg/streamice/streamice_initialise_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/streamice_petsc_numerate.F MITgcm-checkpoint68i/pkg/streamice/streamice_petscmatdestroy.F MITgcm-checkpoint68i/pkg/streamice/streamice_read_pickup.F MITgcm-checkpoint68i/pkg/streamice/streamice_readparms.F MITgcm-checkpoint68i/pkg/streamice/streamice_taub.F MITgcm-checkpoint68i/pkg/streamice/streamice_timestep.F MITgcm-checkpoint68i/pkg/streamice/streamice_tridiag_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_upd_ffrac_uncoupled.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phistage.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve_openad.F MITgcm-checkpoint68i/pkg/streamice/streamice_velmask_upd.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta_hybrid.F MITgcm-checkpoint68i/pkg/streamice/streamice_write_pickup.F MITgcm-checkpoint68i/pkg/thsice/ MITgcm-checkpoint68i/pkg/thsice/THSICE_COST.h MITgcm-checkpoint68i/pkg/thsice/THSICE_DEBUG.h MITgcm-checkpoint68i/pkg/thsice/THSICE_OPTIONS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_PARAMS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_SIZE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_TAVE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_VARS.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad.flow MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_diff.list MITgcm-checkpoint68i/pkg/thsice/thsice_advdiff.F MITgcm-checkpoint68i/pkg/thsice/thsice_advection.F MITgcm-checkpoint68i/pkg/thsice/thsice_albedo.F MITgcm-checkpoint68i/pkg/thsice/thsice_ave.F MITgcm-checkpoint68i/pkg/thsice/thsice_balance_frw.F MITgcm-checkpoint68i/pkg/thsice/thsice_calc_thickn.F MITgcm-checkpoint68i/pkg/thsice/thsice_check.F MITgcm-checkpoint68i/pkg/thsice/thsice_check_conserv.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_driver.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_final.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_init_varia.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_test.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_state.F MITgcm-checkpoint68i/pkg/thsice/thsice_diffusion.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_advect.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_exch.F MITgcm-checkpoint68i/pkg/thsice/thsice_extend.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_bulkf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_precip.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_velocity.F MITgcm-checkpoint68i/pkg/thsice/thsice_impl_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_ini_vars.F MITgcm-checkpoint68i/pkg/thsice/thsice_init_fixed.F MITgcm-checkpoint68i/pkg/thsice/thsice_main.F MITgcm-checkpoint68i/pkg/thsice/thsice_map_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_mnc_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_monitor.F MITgcm-checkpoint68i/pkg/thsice/thsice_output.F MITgcm-checkpoint68i/pkg/thsice/thsice_read_pickup.F MITgcm-checkpoint68i/pkg/thsice/thsice_readparms.F MITgcm-checkpoint68i/pkg/thsice/thsice_reshape_layers.F MITgcm-checkpoint68i/pkg/thsice/thsice_salt_plume.F MITgcm-checkpoint68i/pkg/thsice/thsice_slab_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_solve4temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_fwd.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_test_addfluid.h MITgcm-checkpoint68i/pkg/thsice/thsice_turnoff_io.F MITgcm-checkpoint68i/pkg/thsice/thsice_write_pickup.F MITgcm-checkpoint68i/pkg/timeave/ MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_OPTIONS.h MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_STATV.h MITgcm-checkpoint68i/pkg/timeave/timeave_ad_diff.list MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1k1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_dif_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumulate.F MITgcm-checkpoint68i/pkg/timeave/timeave_description.tex MITgcm-checkpoint68i/pkg/timeave/timeave_init_fixed.F MITgcm-checkpoint68i/pkg/timeave/timeave_norma_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_normalize.F MITgcm-checkpoint68i/pkg/timeave/timeave_reset.F MITgcm-checkpoint68i/pkg/timeave/timeave_statv_write.F MITgcm-checkpoint68i/pkg/timeave/timeave_statvars.F MITgcm-checkpoint68i/pkg/timeave/timeave_surf_flux.F MITgcm-checkpoint68i/pkg/zonal_filt/ MITgcm-checkpoint68i/pkg/zonal_filt/FFTPACK.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/zonal_filt/fftpack.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_ts.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_uv.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_init.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_nofill.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_postsmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_presmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_readparms.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filter.F MITgcm-checkpoint68i/tools/ MITgcm-checkpoint68i/tools/OAD_support/ MITgcm-checkpoint68i/tools/OAD_support/OAD_active.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_regular_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_rev.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_tape.F90 MITgcm-checkpoint68i/tools/OAD_support/ad_inline.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xyz.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_write_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.dummy_in_stepping.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rs.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_max_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_tile_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.regular.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.revolve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.sa_cg2d.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split_non_anonymous.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_cg_solve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_fp_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_invert_surf_forthick.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_smooth_adjoint_field.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_vel_phistage.F MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mUseModules.bash MITgcm-checkpoint68i/tools/OAD_support/dontCompile MITgcm-checkpoint68i/tools/OAD_support/dontTransform MITgcm-checkpoint68i/tools/OAD_support/fixData.sed MITgcm-checkpoint68i/tools/OAD_support/iaddr.c MITgcm-checkpoint68i/tools/OAD_support/insertTemplateDir.bash MITgcm-checkpoint68i/tools/OAD_support/keepOriginal MITgcm-checkpoint68i/tools/OAD_support/revolve.F90 MITgcm-checkpoint68i/tools/OAD_support/stop2print.sed MITgcm-checkpoint68i/tools/OAD_support/strip.sed MITgcm-checkpoint68i/tools/OAD_support/timeRatio.c MITgcm-checkpoint68i/tools/OAD_support/w2f__types.F90 MITgcm-checkpoint68i/tools/ad_taf_output.f.adtrick.diff MITgcm-checkpoint68i/tools/ad_taf_output.f.diva.diff_del1 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MITgcm-checkpoint68i/verification/vermix/input/Qnet_72.forcing MITgcm-checkpoint68i/verification/vermix/input/S.doublediff MITgcm-checkpoint68i/verification/vermix/input/S.init MITgcm-checkpoint68i/verification/vermix/input/T.doublediff MITgcm-checkpoint68i/verification/vermix/input/TKE.init MITgcm-checkpoint68i/verification/vermix/input/T_26.init MITgcm-checkpoint68i/verification/vermix/input/data MITgcm-checkpoint68i/verification/vermix/input/data.diagnostics MITgcm-checkpoint68i/verification/vermix/input/data.kpp MITgcm-checkpoint68i/verification/vermix/input/data.mnc MITgcm-checkpoint68i/verification/vermix/input/data.pkg MITgcm-checkpoint68i/verification/vermix/input/eedata MITgcm-checkpoint68i/verification/vermix/input/gendata.m MITgcm-checkpoint68i/verification/vermix/input/taux_72.forcing MITgcm-checkpoint68i/verification/vermix/input/tr_checklist MITgcm-checkpoint68i/verification/vermix/results/ MITgcm-checkpoint68i/verification/vermix/results/output.dd.txt MITgcm-checkpoint68i/verification/vermix/results/output.ggl90.txt MITgcm-checkpoint68i/verification/vermix/results/output.my82.txt MITgcm-checkpoint68i/verification/vermix/results/output.opps.txt MITgcm-checkpoint68i/verification/vermix/results/output.pp81.txt MITgcm-checkpoint68i/verification/vermix/results/output.txt MITgcm-checkpoint68i/verification/vermix/run/ MITgcm-checkpoint68i/verification/vermix/run/.gitignore [41;37m step #5: BuildMITgcm [0m GENMAKE : A program for GENerating MAKEfiles for the MITgcm project. For a quick list of options, use "genmake2 -h" or for more detail see the documentation, section "Building the model" (under "Getting Started") at: https://mitgcm.readthedocs.io/ === Processing options files and arguments === getting local config information: none found getting OPTFILE information: Warning: no OPTFILE specified so we'll look for possible settings === Searching for possible settings for OPTFILE === The platform appears to be: linux_amd64 The possible FORTRAN compilers found in your path are: gfortran f77 f95 mpif77 Setting OPTFILE to: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran using OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran" get Compiler-version: '8' getting AD_OPTFILE information: using AD_OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/adjoint_options/adjoint_default" check Fortran Compiler... pass (set FC_CHECK=5/5) check makedepend (local: 0, system: 1, 1) Turning on MPI cpp macros === Checking system libraries === Do we have the system() command using mpif77... yes Do we have the fdate() command using mpif77... yes Do we have the etime() command using mpif77... c,r: yes (SbR) Can we call simple C routines (here, "cloc()") using mpif77... yes Can we unlimit the stack size using mpif77... yes Can we register a signal handler using mpif77... yes Can we use stat() through C calls... yes Can we create NetCDF-enabled binaries... no skip check for LAPACK Libs Can we call FLUSH intrinsic subroutine... yes === Setting defaults === Adding MODS directories: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code Making source files in eesupp from templates Making source files in pkg/exch2 from templates Making source files in pkg/regrid from templates === Determining package settings === getting package dependency info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_depend getting package groups info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_groups checking list of packages to compile: using PKG_LIST="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/packages.conf" before group expansion packages are: gfd obcs shelfice diagnostics timeave replacing "gfd" with: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor after group expansion packages are: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor obcs shelfice diagnostics timeave applying DISABLE settings applying ENABLE settings packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave applying package dependency rules packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave Adding STANDARDDIRS='eesupp model' Searching for *OPTIONS.h files in order to warn about the presence of "#define "-type statements that are no longer allowed: found CPP_EEOPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h" found CPP_OPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h" Creating the list of files for the adjoint compiler. === Creating the Makefile === setting INCLUDES Determining the list of source and include files Writing makefile: Makefile Add the source list for AD code generation Making list of "exceptions" that need ".p" files Making list of NOOPTFILES Add rules for links Adding makedepend marker === Done === original 'Makefile' generated successfully => next steps: > make depend > make (<-- to generate executable) make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' if [ ! -L cpl_issm.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/cpl_issm.F cpl_issm.F; fi if [ ! -L do_oceanic_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/do_oceanic_phys.F do_oceanic_phys.F; fi if [ ! -L eeboot_minimal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eeboot_minimal.F eeboot_minimal.F; fi if [ ! -L eedie.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eedie.F eedie.F; fi if [ ! -L chksum_tiled.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/chksum_tiled.F chksum_tiled.F; fi if [ ! -L debug_call.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_call.F debug_call.F; fi if [ ! -L debug_cs_corner_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_cs_corner_uv.F debug_cs_corner_uv.F; fi if [ ! -L debug_enter.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_enter.F debug_enter.F; fi if [ ! -L debug_fld_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rl.F debug_fld_stats_rl.F; fi if [ ! -L debug_fld_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rs.F debug_fld_stats_rs.F; fi if [ ! -L debug_leave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_leave.F debug_leave.F; fi if [ ! -L debug_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_msg.F debug_msg.F; fi if [ ! -L debug_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rl.F debug_stats_rl.F; fi if [ ! -L debug_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rs.F debug_stats_rs.F; fi if [ ! -L fill_in_corners_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/fill_in_corners_rl.F fill_in_corners_rl.F; fi if [ ! -L write_fullarray_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rl.F write_fullarray_rl.F; fi if [ ! -L write_fullarray_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rs.F write_fullarray_rs.F; fi if [ ! -L diag_calc_psivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_calc_psivel.F diag_calc_psivel.F; fi if [ ! -L diag_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_cg2d.F diag_cg2d.F; fi if [ ! -L diagnostics_addtolist.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_addtolist.F diagnostics_addtolist.F; fi if [ ! -L diagnostics_calc_phivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_calc_phivel.F diagnostics_calc_phivel.F; fi if [ ! -L diagnostics_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_check.F diagnostics_check.F; fi if [ ! -L diagnostics_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_clear.F diagnostics_clear.F; fi if [ ! -L diagnostics_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill.F diagnostics_fill.F; fi if [ ! -L diagnostics_fill_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_field.F diagnostics_fill_field.F; fi if [ ! -L diagnostics_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_rs.F diagnostics_fill_rs.F; fi if [ ! -L diagnostics_fill_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_state.F diagnostics_fill_state.F; fi if [ ! -L diagnostics_fract_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fract_fill.F diagnostics_fract_fill.F; fi if [ ! -L diagnostics_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_ini_io.F diagnostics_ini_io.F; fi if [ ! -L diagnostics_init_early.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_early.F diagnostics_init_early.F; fi if [ ! -L diagnostics_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_fixed.F diagnostics_init_fixed.F; fi if [ ! -L diagnostics_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_varia.F diagnostics_init_varia.F; fi if [ ! -L diagnostics_interp_p2p.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_p2p.F diagnostics_interp_p2p.F; fi if [ ! -L diagnostics_interp_vert.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_vert.F diagnostics_interp_vert.F; fi if [ ! -L diagnostics_is_on.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_is_on.F diagnostics_is_on.F; fi if [ ! -L diagnostics_list_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_list_check.F diagnostics_list_check.F; fi if [ ! -L diagnostics_main_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_main_init.F diagnostics_main_init.F; fi if [ ! -L diagnostics_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_mnc_out.F diagnostics_mnc_out.F; fi if [ ! -L diagnostics_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_out.F diagnostics_out.F; fi if [ ! -L diagnostics_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_readparms.F diagnostics_readparms.F; fi if [ ! -L diagnostics_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_read_pickup.F diagnostics_read_pickup.F; fi if [ ! -L diagnostics_scale_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill.F diagnostics_scale_fill.F; fi if [ ! -L diagnostics_scale_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill_rs.F diagnostics_scale_fill_rs.F; fi if [ ! -L diagnostics_set_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_calc.F diagnostics_set_calc.F; fi if [ ! -L diagnostics_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_setdiag.F diagnostics_setdiag.F; fi if [ ! -L diagnostics_set_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_levels.F diagnostics_set_levels.F; fi if [ ! -L diagnostics_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_pointers.F diagnostics_set_pointers.F; fi if [ ! -L diagnostics_status_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_status_error.F diagnostics_status_error.F; fi if [ ! -L diagnostics_sum_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_sum_levels.F diagnostics_sum_levels.F; fi if [ ! -L diagnostics_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_summary.F diagnostics_summary.F; fi if [ ! -L diagnostics_switch_onoff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_switch_onoff.F diagnostics_switch_onoff.F; fi if [ ! -L diagnostics_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_utils.F diagnostics_utils.F; fi if [ ! -L diagnostics_write_adj.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_adj.F diagnostics_write_adj.F; fi if [ ! -L diagnostics_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write.F diagnostics_write.F; fi if [ ! -L diagnostics_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_pickup.F diagnostics_write_pickup.F; fi if [ ! -L diagstats_ascii_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ascii_out.F diagstats_ascii_out.F; fi if [ ! -L diagstats_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_calc.F diagstats_calc.F; fi if [ ! -L diagstats_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_clear.F diagstats_clear.F; fi if [ ! -L diagstats_close_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_close_io.F diagstats_close_io.F; fi if [ ! -L diagstats_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_fill.F diagstats_fill.F; fi if [ ! -L diagstats_global.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_global.F diagstats_global.F; fi if [ ! -L diagstats_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ini_io.F diagstats_ini_io.F; fi if [ ! -L diagstats_local.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_local.F diagstats_local.F; fi if [ ! -L diagstats_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_mnc_out.F diagstats_mnc_out.F; fi if [ ! -L diagstats_others_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_others_calc.F diagstats_others_calc.F; fi if [ ! -L diagstats_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_output.F diagstats_output.F; fi if [ ! -L diagstats_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_setdiag.F diagstats_setdiag.F; fi if [ ! -L diagstats_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_pointers.F diagstats_set_pointers.F; fi if [ ! -L diagstats_set_regions.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_regions.F diagstats_set_regions.F; fi if [ ! -L diag_vegtile_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_vegtile_fill.F diag_vegtile_fill.F; fi if [ ! -L gad_advection.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advection.F gad_advection.F; fi if [ ! -L gad_advscheme.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advscheme.F gad_advscheme.F; fi if [ ! -L gad_biharm_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_r.F gad_biharm_r.F; fi if [ ! -L gad_biharm_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_x.F gad_biharm_x.F; fi if [ ! -L gad_biharm_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_y.F gad_biharm_y.F; fi if [ ! -L gad_c2_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_r.F gad_c2_adv_r.F; fi if [ ! -L gad_c2_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_x.F gad_c2_adv_x.F; fi if [ ! -L gad_c2_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_y.F gad_c2_adv_y.F; fi if [ ! -L gad_c2_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_impl_r.F gad_c2_impl_r.F; fi if [ ! -L gad_c4_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_r.F gad_c4_adv_r.F; fi if [ ! -L gad_c4_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_x.F gad_c4_adv_x.F; fi if [ ! -L gad_c4_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_y.F gad_c4_adv_y.F; fi if [ ! -L gad_calc_rhs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_calc_rhs.F gad_calc_rhs.F; fi if [ ! -L gad_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_check.F gad_check.F; fi if [ ! -L gad_del2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_del2.F gad_del2.F; fi if [ ! -L gad_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_init.F gad_diagnostics_init.F; fi if [ ! -L gad_diagnostics_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_state.F gad_diagnostics_state.F; fi if [ ! -L gad_diff_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_r.F gad_diff_r.F; fi if [ ! -L gad_diff_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_x.F gad_diff_x.F; fi if [ ! -L gad_diff_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_y.F gad_diff_y.F; fi if [ ! -L gad_dst2u1_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_r.F gad_dst2u1_adv_r.F; fi if [ ! -L gad_dst2u1_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_x.F gad_dst2u1_adv_x.F; fi if [ ! -L gad_dst2u1_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_y.F gad_dst2u1_adv_y.F; fi if [ ! -L gad_dst2u1_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_impl_r.F gad_dst2u1_impl_r.F; fi if [ ! -L gad_dst3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_r.F gad_dst3_adv_r.F; fi if [ ! -L gad_dst3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_x.F gad_dst3_adv_x.F; fi if [ ! -L gad_dst3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_y.F gad_dst3_adv_y.F; fi if [ ! -L gad_dst3fl_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_r.F gad_dst3fl_adv_r.F; fi if [ ! -L gad_dst3fl_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_x.F gad_dst3fl_adv_x.F; fi if [ ! -L gad_dst3fl_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_y.F gad_dst3fl_adv_y.F; fi if [ ! -L gad_dst3fl_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_impl_r.F gad_dst3fl_impl_r.F; fi if [ ! -L gad_exch_som.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_exch_som.F gad_exch_som.F; fi if [ ! -L gad_fluxlimit_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_r.F gad_fluxlimit_adv_r.F; fi if [ ! -L gad_fluxlimit_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_x.F gad_fluxlimit_adv_x.F; fi if [ ! -L gad_fluxlimit_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_y.F gad_fluxlimit_adv_y.F; fi if [ ! -L gad_fluxlimit_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_impl_r.F gad_fluxlimit_impl_r.F; fi if [ ! -L gad_grad_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_x.F gad_grad_x.F; fi if [ ! -L gad_grad_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_y.F gad_grad_y.F; fi if [ ! -L gad_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_implicit_r.F gad_implicit_r.F; fi if [ ! -L gad_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_fixed.F gad_init_fixed.F; fi if [ ! -L gad_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_varia.F gad_init_varia.F; fi if [ ! -L gad_os7mp_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_r.F gad_os7mp_adv_r.F; fi if [ ! -L gad_os7mp_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_x.F gad_os7mp_adv_x.F; fi if [ ! -L gad_os7mp_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_y.F gad_os7mp_adv_y.F; fi if [ ! -L gad_osc_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_r.F gad_osc_hat_r.F; fi if [ ! -L gad_osc_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_x.F gad_osc_hat_x.F; fi if [ ! -L gad_osc_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_y.F gad_osc_hat_y.F; fi if [ ! -L gad_osc_mul_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_r.F gad_osc_mul_r.F; fi if [ ! -L gad_osc_mul_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_x.F gad_osc_mul_x.F; fi if [ ! -L gad_osc_mul_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_y.F gad_osc_mul_y.F; fi if [ ! -L gad_plm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_plm_fun.F gad_plm_fun.F; fi if [ ! -L gad_ppm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_r.F gad_ppm_adv_r.F; fi if [ ! -L gad_ppm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_x.F gad_ppm_adv_x.F; fi if [ ! -L gad_ppm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_y.F gad_ppm_adv_y.F; fi if [ ! -L gad_ppm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_r.F gad_ppm_flx_r.F; fi if [ ! -L gad_ppm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_x.F gad_ppm_flx_x.F; fi if [ ! -L gad_ppm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_y.F gad_ppm_flx_y.F; fi if [ ! -L gad_ppm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_fun.F gad_ppm_fun.F; fi if [ ! -L gad_ppm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_r.F gad_ppm_hat_r.F; fi if [ ! -L gad_ppm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_x.F gad_ppm_hat_x.F; fi if [ ! -L gad_ppm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_y.F gad_ppm_hat_y.F; fi if [ ! -L gad_ppm_p3e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_r.F gad_ppm_p3e_r.F; fi if [ ! -L gad_ppm_p3e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_x.F gad_ppm_p3e_x.F; fi if [ ! -L gad_ppm_p3e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_y.F gad_ppm_p3e_y.F; fi if [ ! -L gad_pqm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_r.F gad_pqm_adv_r.F; fi if [ ! -L gad_pqm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_x.F gad_pqm_adv_x.F; fi if [ ! -L gad_pqm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_y.F gad_pqm_adv_y.F; fi if [ ! -L gad_pqm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_r.F gad_pqm_flx_r.F; fi if [ ! -L gad_pqm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_x.F gad_pqm_flx_x.F; fi if [ ! -L gad_pqm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_y.F gad_pqm_flx_y.F; fi if [ ! -L gad_pqm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_fun.F gad_pqm_fun.F; fi if [ ! -L gad_pqm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_r.F gad_pqm_hat_r.F; fi if [ ! -L gad_pqm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_x.F gad_pqm_hat_x.F; fi if [ ! -L gad_pqm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_y.F gad_pqm_hat_y.F; fi if [ ! -L gad_pqm_p5e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_r.F gad_pqm_p5e_r.F; fi if [ ! -L gad_pqm_p5e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_x.F gad_pqm_p5e_x.F; fi if [ ! -L gad_pqm_p5e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_y.F gad_pqm_p5e_y.F; fi if [ ! -L gad_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_read_pickup.F gad_read_pickup.F; fi if [ ! -L gad_som_advect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_advect.F gad_som_advect.F; fi if [ ! -L gad_som_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_r.F gad_som_adv_r.F; fi if [ ! -L gad_som_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_x.F gad_som_adv_x.F; fi if [ ! -L gad_som_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_y.F gad_som_adv_y.F; fi if [ ! -L gad_som_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_exchanges.F gad_som_exchanges.F; fi if [ ! -L gad_som_fill_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_fill_cs_corner.F gad_som_fill_cs_corner.F; fi if [ ! -L gad_som_lim_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_lim_r.F gad_som_lim_r.F; fi if [ ! -L gad_som_prep_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_prep_cs_corner.F gad_som_prep_cs_corner.F; fi if [ ! -L gad_u3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_r.F gad_u3_adv_r.F; fi if [ ! -L gad_u3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_x.F gad_u3_adv_x.F; fi if [ ! -L gad_u3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_y.F gad_u3_adv_y.F; fi if [ ! -L gad_u3c4_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3c4_impl_r.F gad_u3c4_impl_r.F; fi if [ ! -L gad_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_write_pickup.F gad_write_pickup.F; fi if [ ! -L salt_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/salt_fill.F salt_fill.F; fi if [ ! -L mdsio_buffertorl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertorl.F mdsio_buffertorl.F; fi if [ ! -L mdsio_buffertors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertors.F mdsio_buffertors.F; fi if [ ! -L mdsio_check4file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_check4file.F mdsio_check4file.F; fi if [ ! -L mdsio_facef_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_facef_read.F mdsio_facef_read.F; fi if [ ! -L mdsio_gl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl.F mdsio_gl.F; fi if [ ! -L mdsio_gl_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl_slice.F mdsio_gl_slice.F; fi if [ ! -L mdsio_pass_r4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4torl.F mdsio_pass_r4torl.F; fi if [ ! -L mdsio_pass_r4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4tors.F mdsio_pass_r4tors.F; fi if [ ! -L mdsio_pass_r8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8torl.F mdsio_pass_r8torl.F; fi if [ ! -L mdsio_pass_r8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8tors.F mdsio_pass_r8tors.F; fi if [ ! -L mdsio_rd_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rl.F mdsio_rd_rec_rl.F; fi if [ ! -L mdsio_rd_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rs.F mdsio_rd_rec_rs.F; fi if [ ! -L mdsio_read_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_field.F mdsio_read_field.F; fi if [ ! -L mdsio_read_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_meta.F mdsio_read_meta.F; fi if [ ! -L mdsio_read_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_section.F mdsio_read_section.F; fi if [ ! -L mdsio_read_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_tape.F mdsio_read_tape.F; fi if [ ! -L mdsio_readvec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_readvec_loc.F mdsio_readvec_loc.F; fi if [ ! -L mdsio_read_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_whalos.F mdsio_read_whalos.F; fi if [ ! -L mdsio_rw_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_field.F mdsio_rw_field.F; fi if [ ! -L mdsio_rw_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_slice.F mdsio_rw_slice.F; fi if [ ! -L mdsio_seg4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4torl.F mdsio_seg4torl.F; fi if [ ! -L mdsio_seg4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4tors.F mdsio_seg4tors.F; fi if [ ! -L mdsio_seg8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8torl.F mdsio_seg8torl.F; fi if [ ! -L mdsio_seg8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8tors.F mdsio_seg8tors.F; fi if [ ! -L mdsio_segxtorx_2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_segxtorx_2d.F mdsio_segxtorx_2d.F; fi if [ ! -L mdsio_write_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_field.F mdsio_write_field.F; fi if [ ! -L mdsio_writelocal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writelocal.F mdsio_writelocal.F; fi if [ ! -L mdsio_write_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_meta.F mdsio_write_meta.F; fi if [ ! -L mdsio_write_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_section.F mdsio_write_section.F; fi if [ ! -L mdsio_write_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_tape.F mdsio_write_tape.F; fi if [ ! -L mdsio_writevec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writevec_loc.F mdsio_writevec_loc.F; fi if [ ! -L mdsio_write_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_whalos.F mdsio_write_whalos.F; fi if [ ! -L mdsio_wr_metafiles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_metafiles.F mdsio_wr_metafiles.F; fi if [ ! -L mdsio_wr_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rl.F mdsio_wr_rec_rl.F; fi if [ ! -L mdsio_wr_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rs.F mdsio_wr_rec_rs.F; fi if [ ! -L mom_calc_3d_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_3d_strain.F mom_calc_3d_strain.F; fi if [ ! -L mom_calc_absvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_absvort3.F mom_calc_absvort3.F; fi if [ ! -L mom_calc_hdiv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hdiv.F mom_calc_hdiv.F; fi if [ ! -L mom_calc_hfacz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hfacz.F mom_calc_hfacz.F; fi if [ ! -L mom_calc_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_ke.F mom_calc_ke.F; fi if [ ! -L mom_calc_relvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_relvort3.F mom_calc_relvort3.F; fi if [ ! -L mom_calc_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_smag_3d.F mom_calc_smag_3d.F; fi if [ ! -L mom_calc_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_strain.F mom_calc_strain.F; fi if [ ! -L mom_calc_tension.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_tension.F mom_calc_tension.F; fi if [ ! -L mom_calc_visc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_visc.F mom_calc_visc.F; fi if [ ! -L mom_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_diagnostics_init.F mom_diagnostics_init.F; fi if [ ! -L mom_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_hdissip.F mom_hdissip.F; fi if [ ! -L mom_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_init_fixed.F mom_init_fixed.F; fi if [ ! -L mom_quasihydrostatic.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_quasihydrostatic.F mom_quasihydrostatic.F; fi if [ ! -L mom_u_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_botdrag_coeff.F mom_u_botdrag_coeff.F; fi if [ ! -L mom_u_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_coriolis_nh.F mom_u_coriolis_nh.F; fi if [ ! -L mom_u_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_implicit_r.F mom_u_implicit_r.F; fi if [ ! -L mom_u_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_metric_nh.F mom_u_metric_nh.F; fi if [ ! -L mom_u_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_rviscflux.F mom_u_rviscflux.F; fi if [ ! -L mom_u_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_sidedrag.F mom_u_sidedrag.F; fi if [ ! -L mom_uv_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_uv_smag_3d.F mom_uv_smag_3d.F; fi if [ ! -L mom_v_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_botdrag_coeff.F mom_v_botdrag_coeff.F; fi if [ ! -L mom_v_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_coriolis_nh.F mom_v_coriolis_nh.F; fi if [ ! -L mom_v_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_implicit_r.F mom_v_implicit_r.F; fi if [ ! -L mom_visc_qgl_limit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_limit.F mom_visc_qgl_limit.F; fi if [ ! -L mom_visc_qgl_stretch.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_stretch.F mom_visc_qgl_stretch.F; fi if [ ! -L mom_v_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_metric_nh.F mom_v_metric_nh.F; fi if [ ! -L mom_v_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_rviscflux.F mom_v_rviscflux.F; fi if [ ! -L mom_v_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_sidedrag.F mom_v_sidedrag.F; fi if [ ! -L mom_w_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_coriolis_nh.F mom_w_coriolis_nh.F; fi if [ ! -L mom_w_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_metric_nh.F mom_w_metric_nh.F; fi if [ ! -L mom_w_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_sidedrag.F mom_w_sidedrag.F; fi if [ ! -L mom_w_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_smag_3d.F mom_w_smag_3d.F; fi if [ ! -L mom_calc_rtrans.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_calc_rtrans.F mom_calc_rtrans.F; fi if [ ! -L mom_fluxform.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_fluxform.F mom_fluxform.F; fi if [ ! -L mom_u_adv_uu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_uu.F mom_u_adv_uu.F; fi if [ ! -L mom_u_adv_vu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_vu.F mom_u_adv_vu.F; fi if [ ! -L mom_u_adv_wu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_wu.F mom_u_adv_wu.F; fi if [ ! -L mom_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_coriolis.F mom_u_coriolis.F; fi if [ ! -L mom_u_del2u.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_del2u.F mom_u_del2u.F; fi if [ ! -L mom_u_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_cylinder.F mom_u_metric_cylinder.F; fi if [ ! -L mom_u_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_sphere.F mom_u_metric_sphere.F; fi if [ ! -L mom_uv_boundary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_uv_boundary.F mom_uv_boundary.F; fi if [ ! -L mom_u_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_xviscflux.F mom_u_xviscflux.F; fi if [ ! -L mom_u_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_yviscflux.F mom_u_yviscflux.F; fi if [ ! -L mom_v_adv_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_uv.F mom_v_adv_uv.F; fi if [ ! -L mom_v_adv_vv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_vv.F mom_v_adv_vv.F; fi if [ ! -L mom_v_adv_wv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_wv.F mom_v_adv_wv.F; fi if [ ! -L mom_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_coriolis.F mom_v_coriolis.F; fi if [ ! -L mom_v_del2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_del2v.F mom_v_del2v.F; fi if [ ! -L mom_v_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_cylinder.F mom_v_metric_cylinder.F; fi if [ ! -L mom_v_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_sphere.F mom_v_metric_sphere.F; fi if [ ! -L mom_v_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_xviscflux.F mom_v_xviscflux.F; fi if [ ! -L mom_v_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_yviscflux.F mom_v_yviscflux.F; fi if [ ! -L mom_vecinv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vecinv.F mom_vecinv.F; fi if [ ! -L mom_vi_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_coriolis.F mom_vi_coriolis.F; fi if [ ! -L mom_vi_del2uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_del2uv.F mom_vi_del2uv.F; fi if [ ! -L mom_vi_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_hdissip.F mom_vi_hdissip.F; fi if [ ! -L mom_vi_u_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F mom_vi_u_coriolis_c4.F; fi if [ ! -L mom_vi_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis.F mom_vi_u_coriolis.F; fi if [ ! -L mom_vi_u_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_grad_ke.F mom_vi_u_grad_ke.F; fi if [ ! -L mom_vi_u_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_vertshear.F mom_vi_u_vertshear.F; fi if [ ! -L mom_vi_v_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F mom_vi_v_coriolis_c4.F; fi if [ ! -L mom_vi_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis.F mom_vi_v_coriolis.F; fi if [ ! -L mom_vi_v_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_grad_ke.F mom_vi_v_grad_ke.F; fi if [ ! -L mom_vi_v_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_vertshear.F mom_vi_v_vertshear.F; fi if [ ! -L mon_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcfl.F mon_advcfl.F; fi if [ ! -L mon_advcflw2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw2.F mon_advcflw2.F; fi if [ ! -L mon_advcflw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw.F mon_advcflw.F; fi if [ ! -L mon_calc_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_advcfl.F mon_calc_advcfl.F; fi if [ ! -L mon_calc_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rl.F mon_calc_stats_rl.F; fi if [ ! -L mon_calc_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rs.F mon_calc_stats_rs.F; fi if [ ! -L mon_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_init.F mon_init.F; fi if [ ! -L monitor_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_ad.F monitor_ad.F; fi if [ ! -L monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor.F monitor.F; fi if [ ! -L monitor_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_g.F monitor_g.F; fi if [ ! -L mon_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_ke.F mon_ke.F; fi if [ ! -L mon_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_out.F mon_out.F; fi if [ ! -L mon_printstats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rl.F mon_printstats_rl.F; fi if [ ! -L mon_printstats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rs.F mon_printstats_rs.F; fi if [ ! -L mon_set_iounit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_iounit.F mon_set_iounit.F; fi if [ ! -L mon_set_pref.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_pref.F mon_set_pref.F; fi if [ ! -L mon_solution.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_solution.F mon_solution.F; fi if [ ! -L mon_stats_latbnd_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_latbnd_rl.F mon_stats_latbnd_rl.F; fi if [ ! -L mon_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rl.F mon_stats_rl.F; fi if [ ! -L mon_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rs.F mon_stats_rs.F; fi if [ ! -L mon_surfcor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_surfcor.F mon_surfcor.F; fi if [ ! -L mon_vort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_vort3.F mon_vort3.F; fi if [ ! -L mon_writestats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rl.F mon_writestats_rl.F; fi if [ ! -L mon_writestats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rs.F mon_writestats_rs.F; fi if [ ! -L obcs_add_tides.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_add_tides.F obcs_add_tides.F; fi if [ ! -L obcs_adjust.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust.F obcs_adjust.F; fi if [ ! -L obcs_adjust_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust_uvice.F obcs_adjust_uvice.F; fi if [ ! -L obcs_apply_eta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_eta.F obcs_apply_eta.F; fi if [ ! -L obcs_apply_ptracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ptracer.F obcs_apply_ptracer.F; fi if [ ! -L obcs_apply_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_r_star.F obcs_apply_r_star.F; fi if [ ! -L obcs_apply_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_seaice.F obcs_apply_seaice.F; fi if [ ! -L obcs_apply_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_surf_dr.F obcs_apply_surf_dr.F; fi if [ ! -L obcs_apply_ts.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ts.F obcs_apply_ts.F; fi if [ ! -L obcs_apply_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uv.F obcs_apply_uv.F; fi if [ ! -L obcs_apply_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uvice.F obcs_apply_uvice.F; fi if [ ! -L obcs_apply_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_w.F obcs_apply_w.F; fi if [ ! -L obcs_balance_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_balance_flow.F obcs_balance_flow.F; fi if [ ! -L obcs_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc.F obcs_calc.F; fi if [ ! -L obcs_calc_stevens.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc_stevens.F obcs_calc_stevens.F; fi if [ ! -L obcs_check_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check_depths.F obcs_check_depths.F; fi if [ ! -L obcs_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check.F obcs_check.F; fi if [ ! -L obcs_copy_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_tracer.F obcs_copy_tracer.F; fi if [ ! -L obcs_copy_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_uv_n.F obcs_copy_uv_n.F; fi if [ ! -L obcs_diag_balance.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_diag_balance.F obcs_diag_balance.F; fi if [ ! -L obcs_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exchanges.F obcs_exchanges.F; fi if [ ! -L obcs_exf_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exf_load.F obcs_exf_load.F; fi if [ ! -L obcs_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_fields_load.F obcs_fields_load.F; fi if [ ! -L obcs_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_fixed.F obcs_init_fixed.F; fi if [ ! -L obcs_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_variables.F obcs_init_variables.F; fi if [ ! -L obcs_monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_monitor.F obcs_monitor.F; fi if [ ! -L obcs_mon_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_mon_stats.F obcs_mon_stats.F; fi if [ ! -L obcs_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_output.F obcs_output.F; fi if [ ! -L obcs_prescribe_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_prescribe_read.F obcs_prescribe_read.F; fi if [ ! -L obcs_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_readparms.F obcs_readparms.F; fi if [ ! -L obcs_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_read_pickup.F obcs_read_pickup.F; fi if [ ! -L obcs_save_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_save_uv_n.F obcs_save_uv_n.F; fi if [ ! -L obcs_seaice_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_seaice_sponge.F obcs_seaice_sponge.F; fi if [ ! -L obcs_set_connect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_set_connect.F obcs_set_connect.F; fi if [ ! -L obcs_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_sponge.F obcs_sponge.F; fi if [ ! -L obcs_u1_adv_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_u1_adv_tracer.F obcs_u1_adv_tracer.F; fi if [ ! -L obcs_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_write_pickup.F obcs_write_pickup.F; fi if [ ! -L orlanski_east.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_east.F orlanski_east.F; fi if [ ! -L orlanski_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_init.F orlanski_init.F; fi if [ ! -L orlanski_north.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_north.F orlanski_north.F; fi if [ ! -L orlanski_south.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_south.F orlanski_south.F; fi if [ ! -L orlanski_west.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_west.F orlanski_west.F; fi if [ ! -L get_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/get_write_global_fld.F get_write_global_fld.F; fi if [ ! -L read_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rl.F read_fld_xy_rl.F; fi if [ ! -L read_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rs.F read_fld_xy_rs.F; fi if [ ! -L read_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rl.F read_fld_xyz_rl.F; fi if [ ! -L read_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rs.F read_fld_xyz_rs.F; fi if [ ! -L read_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rl.F read_glvec_rl.F; fi if [ ! -L read_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rs.F read_glvec_rs.F; fi if [ ! -L read_mflds.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_mflds.F read_mflds.F; fi if [ ! -L read_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_rec.F read_rec.F; fi if [ ! -L rw_get_suffix.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/rw_get_suffix.F rw_get_suffix.F; fi if [ ! -L set_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/set_write_global_fld.F set_write_global_fld.F; fi if [ ! -L write_fld_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rl.F write_fld_3d_rl.F; fi if [ ! -L write_fld_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rs.F write_fld_3d_rs.F; fi if [ ! -L write_fld_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rl.F write_fld_s3d_rl.F; fi if [ ! -L write_fld_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rs.F write_fld_s3d_rs.F; fi if [ ! -L write_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rl.F write_fld_xy_rl.F; fi if [ ! -L write_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rs.F write_fld_xy_rs.F; fi if [ ! -L write_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rl.F write_fld_xyz_rl.F; fi if [ ! -L write_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rs.F write_fld_xyz_rs.F; fi if [ ! -L write_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rl.F write_glvec_rl.F; fi if [ ! -L write_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rs.F write_glvec_rs.F; fi if [ ! -L write_local_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rl.F write_local_rl.F; fi if [ ! -L write_local_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rs.F write_local_rs.F; fi if [ ! -L write_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_rec.F write_rec.F; fi if [ ! -L shelfice_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_check.F shelfice_check.F; fi if [ ! -L shelfice_cost_accumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_accumulate.F shelfice_cost_accumulate.F; fi if [ ! -L shelfice_cost_final.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_final.F shelfice_cost_final.F; fi if [ ! -L shelfice_cost_shifwflx.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_shifwflx.F shelfice_cost_shifwflx.F; fi if [ ! -L shelfice_diagnostics_drag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_diagnostics_drag.F shelfice_diagnostics_drag.F; fi if [ ! -L shelfice_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing.F shelfice_forcing.F; fi if [ ! -L shelfice_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing_surf.F shelfice_forcing_surf.F; fi if [ ! -L shelfice_init_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_depths.F shelfice_init_depths.F; fi if [ ! -L shelfice_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_fixed.F shelfice_init_fixed.F; fi if [ ! -L shelfice_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_varia.F shelfice_init_varia.F; fi if [ ! -L shelfice_mask_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mask_seaice.F shelfice_mask_seaice.F; fi if [ ! -L shelfice_mnc_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mnc_init.F shelfice_mnc_init.F; fi if [ ! -L shelfice_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_output.F shelfice_output.F; fi if [ ! -L shelfice_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_readparms.F shelfice_readparms.F; fi if [ ! -L shelfice_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_read_pickup.F shelfice_read_pickup.F; fi if [ ! -L shelfice_remesh_calc_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_calc_w.F shelfice_remesh_calc_w.F; fi if [ ! -L shelfice_remesh_c_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_c_mask.F shelfice_remesh_c_mask.F; fi if [ ! -L shelfice_remeshing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remeshing.F shelfice_remeshing.F; fi if [ ! -L shelfice_remesh_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_state.F shelfice_remesh_state.F; fi if [ ! -L shelfice_remesh_uv_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_uv_mask.F shelfice_remesh_uv_mask.F; fi if [ ! -L shelfice_step_icemass.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_step_icemass.F shelfice_step_icemass.F; fi if [ ! -L shelfice_thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_thermodynamics.F shelfice_thermodynamics.F; fi if [ ! -L shelfice_u_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_u_drag_coeff.F shelfice_u_drag_coeff.F; fi if [ ! -L shelfice_v_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_v_drag_coeff.F shelfice_v_drag_coeff.F; fi if [ ! -L shelfice_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_write_pickup.F shelfice_write_pickup.F; fi if [ ! -L timeave_cumul_1k1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1k1t.F timeave_cumul_1k1t.F; fi if [ ! -L timeave_cumul_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1t.F timeave_cumul_1t.F; fi if [ ! -L timeave_cumul_1vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1vfc.F timeave_cumul_1vfc.F; fi if [ ! -L timeave_cumul_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2v.F timeave_cumul_2v.F; fi if [ ! -L timeave_cumul_2vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2vfc.F timeave_cumul_2vfc.F; fi if [ ! -L timeave_cumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumulate.F timeave_cumulate.F; fi if [ ! -L timeave_cumul_dif_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_dif_1t.F timeave_cumul_dif_1t.F; fi if [ ! -L timeave_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_init_fixed.F timeave_init_fixed.F; fi if [ ! -L timeave_norma_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_norma_2v.F timeave_norma_2v.F; fi if [ ! -L timeave_normalize.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_normalize.F timeave_normalize.F; fi if [ ! -L timeave_reset.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_reset.F timeave_reset.F; fi if [ ! -L timeave_statvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statvars.F timeave_statvars.F; fi if [ ! -L timeave_statv_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statv_write.F timeave_statv_write.F; fi if [ ! -L timeave_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_surf_flux.F timeave_surf_flux.F; fi if [ ! -L all_proc_die.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/all_proc_die.F all_proc_die.F; fi if [ ! -L bar2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar2.F bar2.F; fi if [ ! -L bar_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar_check.F bar_check.F; fi if [ ! -L barrier.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/barrier.F barrier.F; fi if [ ! -L check_threads.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/check_threads.F check_threads.F; fi if [ ! -L comm_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/comm_stats.F comm_stats.F; fi if [ ! -L cumulsum_z_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/cumulsum_z_tile.F cumulsum_z_tile.F; fi if [ ! -L different_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/different_multiple.F different_multiple.F; fi if [ ! -L diff_phase_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/diff_phase_multiple.F diff_phase_multiple.F; fi if [ ! -L eeboot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeboot.F eeboot.F; fi if [ ! -L eedata_example.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eedata_example.F eedata_example.F; fi if [ ! -L eeintro_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeintro_msg.F eeintro_msg.F; fi if [ ! -L eeset_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeset_parms.F eeset_parms.F; fi if [ ! -L eewrite_eeenv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eewrite_eeenv.F eewrite_eeenv.F; fi if [ ! -L exch0_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r4.F exch0_r4.F; fi if [ ! -L exch0_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r8.F exch0_r8.F; fi if [ ! -L exch0_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rl.F exch0_rl.F; fi if [ ! -L exch0_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rs.F exch0_rs.F; fi if [ ! -L exch1_bg_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r4_cube.F exch1_bg_r4_cube.F; fi if [ ! -L exch1_bg_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r8_cube.F exch1_bg_r8_cube.F; fi if [ ! -L exch1_bg_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rl_cube.F exch1_bg_rl_cube.F; fi if [ ! -L exch1_bg_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rs_cube.F exch1_bg_rs_cube.F; fi if [ ! -L exch1_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4_cube.F exch1_r4_cube.F; fi if [ ! -L exch1_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4.F exch1_r4.F; fi if [ ! -L exch1_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8_cube.F exch1_r8_cube.F; fi if [ ! -L exch1_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8.F exch1_r8.F; fi if [ ! -L exch1_rl_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_ad.F exch1_rl_ad.F; fi if [ ! -L exch1_rl_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube_ad.F exch1_rl_cube_ad.F; fi if [ ! -L exch1_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube.F exch1_rl_cube.F; fi if [ ! -L exch1_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl.F exch1_rl.F; fi if [ ! -L exch1_rs_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_ad.F exch1_rs_ad.F; fi if [ ! -L exch1_rs_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube_ad.F exch1_rs_cube_ad.F; fi if [ ! -L exch1_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube.F exch1_rs_cube.F; fi if [ ! -L exch1_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs.F exch1_rs.F; fi if [ ! -L exch1_uv_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r4_cube.F exch1_uv_r4_cube.F; fi if [ ! -L exch1_uv_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r8_cube.F exch1_uv_r8_cube.F; fi if [ ! -L exch1_uv_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rl_cube.F exch1_uv_rl_cube.F; fi if [ ! -L exch1_uv_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rs_cube.F exch1_uv_rs_cube.F; fi if [ ! -L exch1_z_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r4_cube.F exch1_z_r4_cube.F; fi if [ ! -L exch1_z_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r8_cube.F exch1_z_r8_cube.F; fi if [ ! -L exch1_z_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rl_cube.F exch1_z_rl_cube.F; fi if [ ! -L exch1_z_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rs_cube.F exch1_z_rs_cube.F; fi if [ ! -L exch_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r4.F exch_3d_r4.F; fi if [ ! -L exch_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r8.F exch_3d_r8.F; fi if [ ! -L exch_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rl.F exch_3d_rl.F; fi if [ ! -L exch_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rs.F exch_3d_rs.F; fi if [ ! -L exch_cycle_ebl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_cycle_ebl.F exch_cycle_ebl.F; fi if [ ! -L exch_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_init.F exch_init.F; fi if [ ! -L exch_r4_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_x.F exch_r4_recv_get_x.F; fi if [ ! -L exch_r4_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_y.F exch_r4_recv_get_y.F; fi if [ ! -L exch_r4_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_x.F exch_r4_send_put_x.F; fi if [ ! -L exch_r4_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_y.F exch_r4_send_put_y.F; fi if [ ! -L exch_r8_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_x.F exch_r8_recv_get_x.F; fi if [ ! -L exch_r8_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_y.F exch_r8_recv_get_y.F; fi if [ ! -L exch_r8_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_x.F exch_r8_send_put_x.F; fi if [ ! -L exch_r8_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_y.F exch_r8_send_put_y.F; fi if [ ! -L exch_rl_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_x.F exch_rl_recv_get_x.F; fi if [ ! -L exch_rl_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_y.F exch_rl_recv_get_y.F; fi if [ ! -L exch_rl_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_x.F exch_rl_send_put_x.F; fi if [ ! -L exch_rl_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_y.F exch_rl_send_put_y.F; fi if [ ! -L exch_rs_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_x.F exch_rs_recv_get_x.F; fi if [ ! -L exch_rs_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_y.F exch_rs_recv_get_y.F; fi if [ ! -L exch_rs_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_x.F exch_rs_send_put_x.F; fi if [ ! -L exch_rs_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_y.F exch_rs_send_put_y.F; fi if [ ! -L exch_s3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r4.F exch_s3d_r4.F; fi if [ ! -L exch_s3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r8.F exch_s3d_r8.F; fi if [ ! -L exch_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rl.F exch_s3d_rl.F; fi if [ ! -L exch_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rs.F exch_s3d_rs.F; fi if [ ! -L exch_sm_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r4.F exch_sm_3d_r4.F; fi if [ ! -L exch_sm_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r8.F exch_sm_3d_r8.F; fi if [ ! -L exch_sm_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rl.F exch_sm_3d_rl.F; fi if [ ! -L exch_sm_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rs.F exch_sm_3d_rs.F; fi if [ ! -L exch_uv_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r4.F exch_uv_3d_r4.F; fi if [ ! -L exch_uv_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r8.F exch_uv_3d_r8.F; fi if [ ! -L exch_uv_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rl.F exch_uv_3d_rl.F; fi if [ ! -L exch_uv_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rs.F exch_uv_3d_rs.F; fi if [ ! -L exch_uv_agrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r4.F; fi if [ ! -L exch_uv_agrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_r8.F; fi if [ ! -L exch_uv_agrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rl.F; fi if [ ! -L exch_uv_agrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rs.F exch_uv_agrid_3d_rs.F; fi if [ ! -L exch_uv_bgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r4.F; fi if [ ! -L exch_uv_bgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_r8.F; fi if [ ! -L exch_uv_bgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rl.F; fi if [ ! -L exch_uv_bgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rs.F exch_uv_bgrid_3d_rs.F; fi if [ ! -L exch_uv_dgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r4.F; fi if [ ! -L exch_uv_dgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_r8.F; fi if [ ! -L exch_uv_dgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rl.F; fi if [ ! -L exch_uv_dgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rs.F exch_uv_dgrid_3d_rs.F; fi if [ ! -L exch_uv_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r4.F exch_uv_xy_r4.F; fi if [ ! -L exch_uv_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r8.F exch_uv_xy_r8.F; fi if [ ! -L exch_uv_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rl.F exch_uv_xy_rl.F; fi if [ ! -L exch_uv_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rs.F exch_uv_xy_rs.F; fi if [ ! -L exch_uv_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r4.F exch_uv_xyz_r4.F; fi if [ ! -L exch_uv_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r8.F exch_uv_xyz_r8.F; fi if [ ! -L exch_uv_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rl.F exch_uv_xyz_rl.F; fi if [ ! -L exch_uv_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rs.F exch_uv_xyz_rs.F; fi if [ ! -L exch_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r4.F exch_xy_r4.F; fi if [ ! -L exch_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r8.F exch_xy_r8.F; fi if [ ! -L exch_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rl.F exch_xy_rl.F; fi if [ ! -L exch_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rs.F exch_xy_rs.F; fi if [ ! -L exch_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r4.F exch_xyz_r4.F; fi if [ ! -L exch_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r8.F exch_xyz_r8.F; fi if [ ! -L exch_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rl.F exch_xyz_rl.F; fi if [ ! -L exch_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rs.F exch_xyz_rs.F; fi if [ ! -L exch_z_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r4.F exch_z_3d_r4.F; fi if [ ! -L exch_z_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r8.F exch_z_3d_r8.F; fi if [ ! -L exch_z_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rl.F exch_z_3d_rl.F; fi if [ ! -L exch_z_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rs.F exch_z_3d_rs.F; fi if [ ! -L fill_cs_corner_ag_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_ag_rl.F fill_cs_corner_ag_rl.F; fi if [ ! -L fill_cs_corner_tr_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_tr_rl.F fill_cs_corner_tr_rl.F; fi if [ ! -L fill_cs_corner_uv_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rl.F fill_cs_corner_uv_rl.F; fi if [ ! -L fill_cs_corner_uv_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rs.F fill_cs_corner_uv_rs.F; fi if [ ! -L fool_the_compiler.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fool_the_compiler.F fool_the_compiler.F; fi if [ ! -L gather_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r4.F gather_2d_r4.F; fi if [ ! -L gather_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r8.F gather_2d_r8.F; fi if [ ! -L gather_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r4.F gather_2d_wh_r4.F; fi if [ ! -L gather_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r8.F gather_2d_wh_r8.F; fi if [ ! -L gather_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r4.F gather_vec_r4.F; fi if [ ! -L gather_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r8.F gather_vec_r8.F; fi if [ ! -L gather_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_xz.F gather_xz.F; fi if [ ! -L gather_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_yz.F gather_yz.F; fi if [ ! -L get_periodic_interval.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/get_periodic_interval.F get_periodic_interval.F; fi if [ ! -L global_max.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_max.F global_max.F; fi if [ ! -L global_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum.F global_sum.F; fi if [ ! -L global_sum_singlecpu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_singlecpu.F global_sum_singlecpu.F; fi if [ ! -L global_sum_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_tile.F global_sum_tile.F; fi if [ ! -L global_vec_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_vec_sum.F global_vec_sum.F; fi if [ ! -L gsum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsum.F gsum.F; fi if [ ! -L ini_communication_patterns.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_communication_patterns.F ini_communication_patterns.F; fi if [ ! -L ini_procs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_procs.F ini_procs.F; fi if [ ! -L ini_threading_environment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_threading_environment.F ini_threading_environment.F; fi if [ ! -L lef_zero.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/lef_zero.F lef_zero.F; fi if [ ! -L main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/main.F main.F; fi if [ ! -L master_cpu_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_io.F master_cpu_io.F; fi if [ ! -L master_cpu_thread.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_thread.F master_cpu_thread.F; fi if [ ! -L mds_byteswapi4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapi4.F mds_byteswapi4.F; fi if [ ! -L mds_byteswapr4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr4.F mds_byteswapr4.F; fi if [ ! -L mds_byteswapr8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr8.F mds_byteswapr8.F; fi if [ ! -L mdsfindunit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mdsfindunit.F mdsfindunit.F; fi if [ ! -L mds_flush.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_flush.F mds_flush.F; fi if [ ! -L mds_reclen.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_reclen.F mds_reclen.F; fi if [ ! -L memsync.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/memsync.F memsync.F; fi if [ ! -L nml_change_syntax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_change_syntax.F nml_change_syntax.F; fi if [ ! -L nml_set_terminator.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_set_terminator.F nml_set_terminator.F; fi if [ ! -L open_copy_data_file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/open_copy_data_file.F open_copy_data_file.F; fi if [ ! -L print.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/print.F print.F; fi if [ ! -L reset_halo.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/reset_halo.F reset_halo.F; fi if [ ! -L scatter_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r4.F scatter_2d_r4.F; fi if [ ! -L scatter_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r8.F scatter_2d_r8.F; fi if [ ! -L scatter_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r4.F scatter_2d_wh_r4.F; fi if [ ! -L scatter_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r8.F scatter_2d_wh_r8.F; fi if [ ! -L scatter_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r4.F scatter_vec_r4.F; fi if [ ! -L scatter_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r8.F scatter_vec_r8.F; fi if [ ! -L scatter_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_xz.F scatter_xz.F; fi if [ ! -L scatter_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_yz.F scatter_yz.F; fi if [ ! -L stop_if_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/stop_if_error.F stop_if_error.F; fi if [ ! -L timers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timers.F timers.F; fi if [ ! -L utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/utils.F utils.F; fi if [ ! -L write_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/write_utils.F write_utils.F; fi if [ ! -L adams_bashforth2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth2.F adams_bashforth2.F; fi if [ ! -L adams_bashforth3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth3.F adams_bashforth3.F; fi if [ ! -L add_walls2masks.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/add_walls2masks.F add_walls2masks.F; fi if [ ! -L apply_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/apply_forcing.F apply_forcing.F; fi if [ ! -L calc_3d_diffusivity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_3d_diffusivity.F calc_3d_diffusivity.F; fi if [ ! -L calc_adv_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_adv_flow.F calc_adv_flow.F; fi if [ ! -L calc_div_ghat.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_div_ghat.F calc_div_ghat.F; fi if [ ! -L calc_eddy_stress.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_eddy_stress.F calc_eddy_stress.F; fi if [ ! -L calc_grad_phi_fv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_fv.F calc_grad_phi_fv.F; fi if [ ! -L calc_grad_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_hyd.F calc_grad_phi_hyd.F; fi if [ ! -L calc_grad_phi_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_surf.F calc_grad_phi_surf.F; fi if [ ! -L calc_grid_angles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grid_angles.F calc_grid_angles.F; fi if [ ! -L calc_gw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_gw.F calc_gw.F; fi if [ ! -L calc_ivdc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_ivdc.F calc_ivdc.F; fi if [ ! -L calc_oce_mxlayer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_oce_mxlayer.F calc_oce_mxlayer.F; fi if [ ! -L calc_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_phi_hyd.F calc_phi_hyd.F; fi if [ ! -L calc_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_r_star.F calc_r_star.F; fi if [ ! -L calc_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_surf_dr.F calc_surf_dr.F; fi if [ ! -L calc_viscosity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_viscosity.F calc_viscosity.F; fi if [ ! -L calc_wsurf_tr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_wsurf_tr.F calc_wsurf_tr.F; fi if [ ! -L cg2d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_ex0.F cg2d_ex0.F; fi if [ ! -L cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d.F cg2d.F; fi if [ ! -L cg2d_nsa.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_nsa.F cg2d_nsa.F; fi if [ ! -L cg2d_sr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_sr.F cg2d_sr.F; fi if [ ! -L cg3d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d_ex0.F cg3d_ex0.F; fi if [ ! -L cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d.F cg3d.F; fi if [ ! -L check_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/check_pickup.F check_pickup.F; fi if [ ! -L config_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_check.F config_check.F; fi if [ ! -L config_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_summary.F config_summary.F; fi if [ ! -L convective_adjustment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment.F convective_adjustment.F; fi if [ ! -L convective_adjustment_ini.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment_ini.F convective_adjustment_ini.F; fi if [ ! -L convectively_mixtracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convectively_mixtracer.F convectively_mixtracer.F; fi if [ ! -L convective_weights.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_weights.F convective_weights.F; fi if [ ! -L correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/correction_step.F correction_step.F; fi if [ ! -L cycle_ab_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_ab_tracer.F cycle_ab_tracer.F; fi if [ ! -L cycle_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_tracer.F cycle_tracer.F; fi if [ ! -L diags_oceanic_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_oceanic_surf_flux.F diags_oceanic_surf_flux.F; fi if [ ! -L diags_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_hyd.F diags_phi_hyd.F; fi if [ ! -L diags_phi_rlow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_rlow.F diags_phi_rlow.F; fi if [ ! -L diags_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_rho.F diags_rho.F; fi if [ ! -L diags_sound_speed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_sound_speed.F diags_sound_speed.F; fi if [ ! -L do_atmospheric_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_atmospheric_phys.F do_atmospheric_phys.F; fi if [ ! -L do_fields_blocking_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_fields_blocking_exchanges.F do_fields_blocking_exchanges.F; fi if [ ! -L do_stagger_fields_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_stagger_fields_exchanges.F do_stagger_fields_exchanges.F; fi if [ ! -L do_statevars_diags.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_diags.F do_statevars_diags.F; fi if [ ! -L do_statevars_tave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_tave.F do_statevars_tave.F; fi if [ ! -L do_the_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_the_model_io.F do_the_model_io.F; fi if [ ! -L do_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_write_pickup.F do_write_pickup.F; fi if [ ! -L dynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/dynamics.F dynamics.F; fi if [ ! -L external_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_fields_load.F external_fields_load.F; fi if [ ! -L external_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing.F external_forcing.F; fi if [ ! -L external_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing_surf.F external_forcing_surf.F; fi if [ ! -L find_alpha.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_alpha.F find_alpha.F; fi if [ ! -L find_hyd_press_1d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_hyd_press_1d.F find_hyd_press_1d.F; fi if [ ! -L find_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_rho.F find_rho.F; fi if [ ! -L forcing_surf_relax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forcing_surf_relax.F forcing_surf_relax.F; fi if [ ! -L forward_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forward_step.F forward_step.F; fi if [ ! -L freesurf_rescale_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freesurf_rescale_g.F freesurf_rescale_g.F; fi if [ ! -L freeze_surface.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freeze_surface.F freeze_surface.F; fi if [ ! -L grad_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/grad_sigma.F grad_sigma.F; fi if [ ! -L gsw_teos10.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/gsw_teos10.F gsw_teos10.F; fi if [ ! -L impldiff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/impldiff.F impldiff.F; fi if [ ! -L ini_cartesian_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cartesian_grid.F ini_cartesian_grid.F; fi if [ ! -L ini_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg2d.F ini_cg2d.F; fi if [ ! -L ini_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg3d.F ini_cg3d.F; fi if [ ! -L ini_cori.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cori.F ini_cori.F; fi if [ ! -L ini_curvilinear_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_curvilinear_grid.F ini_curvilinear_grid.F; fi if [ ! -L ini_cylinder_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cylinder_grid.F ini_cylinder_grid.F; fi if [ ! -L ini_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_depths.F ini_depths.F; fi if [ ! -L ini_dynvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_dynvars.F ini_dynvars.F; fi if [ ! -L ini_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_eos.F ini_eos.F; fi if [ ! -L ini_ffields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_ffields.F ini_ffields.F; fi if [ ! -L ini_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_fields.F ini_fields.F; fi if [ ! -L ini_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_forcing.F ini_forcing.F; fi if [ ! -L ini_global_domain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_global_domain.F ini_global_domain.F; fi if [ ! -L ini_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_grid.F ini_grid.F; fi if [ ! -L ini_linear_phisurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_linear_phisurf.F ini_linear_phisurf.F; fi if [ ! -L ini_local_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_local_grid.F ini_local_grid.F; fi if [ ! -L ini_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_masks_etc.F ini_masks_etc.F; fi if [ ! -L ini_mixing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mixing.F ini_mixing.F; fi if [ ! -L ini_mnc_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mnc_vars.F ini_mnc_vars.F; fi if [ ! -L ini_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_model_io.F ini_model_io.F; fi if [ ! -L ini_nh_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_fields.F ini_nh_fields.F; fi if [ ! -L ini_nh_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_vars.F ini_nh_vars.F; fi if [ ! -L ini_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nlfs_vars.F ini_nlfs_vars.F; fi if [ ! -L ini_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_parms.F ini_parms.F; fi if [ ! -L ini_p_ground.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_p_ground.F ini_p_ground.F; fi if [ ! -L ini_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_pressure.F ini_pressure.F; fi if [ ! -L ini_psurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_psurf.F ini_psurf.F; fi if [ ! -L ini_salt.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_salt.F ini_salt.F; fi if [ ! -L ini_sigma_hfac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_sigma_hfac.F ini_sigma_hfac.F; fi if [ ! -L ini_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_spherical_polar_grid.F ini_spherical_polar_grid.F; fi if [ ! -L ini_theta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_theta.F ini_theta.F; fi if [ ! -L initialise_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_fixed.F initialise_fixed.F; fi if [ ! -L initialise_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_varia.F initialise_varia.F; fi if [ ! -L ini_vel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vel.F ini_vel.F; fi if [ ! -L ini_vertical_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vertical_grid.F ini_vertical_grid.F; fi if [ ! -L integrate_for_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integrate_for_w.F integrate_for_w.F; fi if [ ! -L integr_continuity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integr_continuity.F integr_continuity.F; fi if [ ! -L load_fields_driver.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_fields_driver.F load_fields_driver.F; fi if [ ! -L load_grid_spacing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_grid_spacing.F load_grid_spacing.F; fi if [ ! -L load_ref_files.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_ref_files.F load_ref_files.F; fi if [ ! -L main_do_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/main_do_loop.F main_do_loop.F; fi if [ ! -L momentum_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/momentum_correction_step.F momentum_correction_step.F; fi if [ ! -L packages_boot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_boot.F packages_boot.F; fi if [ ! -L packages_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_check.F packages_check.F; fi if [ ! -L packages_error_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_error_msg.F packages_error_msg.F; fi if [ ! -L packages_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_fixed.F packages_init_fixed.F; fi if [ ! -L packages_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_variables.F packages_init_variables.F; fi if [ ! -L packages_print_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_print_msg.F packages_print_msg.F; fi if [ ! -L packages_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_readparms.F packages_readparms.F; fi if [ ! -L packages_unused_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_unused_msg.F packages_unused_msg.F; fi if [ ! -L packages_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_write_pickup.F packages_write_pickup.F; fi if [ ! -L plot_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/plot_field.F plot_field.F; fi if [ ! -L port_rand.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/port_rand.F port_rand.F; fi if [ ! -L post_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/post_cg3d.F post_cg3d.F; fi if [ ! -L pre_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pre_cg3d.F pre_cg3d.F; fi if [ ! -L pressure_for_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pressure_for_eos.F pressure_for_eos.F; fi if [ ! -L read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/read_pickup.F read_pickup.F; fi if [ ! -L remove_mean.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/remove_mean.F remove_mean.F; fi if [ ! -L reset_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/reset_nlfs_vars.F reset_nlfs_vars.F; fi if [ ! -L rotate_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_spherical_polar_grid.F rotate_spherical_polar_grid.F; fi if [ ! -L rotate_uv2en.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_uv2en.F rotate_uv2en.F; fi if [ ! -L salt_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/salt_integrate.F salt_integrate.F; fi if [ ! -L seawater.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/seawater.F seawater.F; fi if [ ! -L set_defaults.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_defaults.F set_defaults.F; fi if [ ! -L set_grid_factors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_grid_factors.F set_grid_factors.F; fi if [ ! -L set_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_parms.F set_parms.F; fi if [ ! -L set_ref_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_ref_state.F set_ref_state.F; fi if [ ! -L solve_for_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_for_pressure.F solve_for_pressure.F; fi if [ ! -L solve_pentadiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_pentadiagonal.F solve_pentadiagonal.F; fi if [ ! -L solve_tridiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_tridiagonal.F solve_tridiagonal.F; fi if [ ! -L solve_uv_tridiago.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_uv_tridiago.F solve_uv_tridiago.F; fi if [ ! -L state_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/state_summary.F state_summary.F; fi if [ ! -L swfrac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/swfrac.F swfrac.F; fi if [ ! -L taueddy_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_init_varia.F taueddy_init_varia.F; fi if [ ! -L taueddy_tendency_apply.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_tendency_apply.F taueddy_tendency_apply.F; fi if [ ! -L temp_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/temp_integrate.F temp_integrate.F; fi if [ ! -L the_main_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_main_loop.F the_main_loop.F; fi if [ ! -L the_model_main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_model_main.F the_model_main.F; fi if [ ! -L thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/thermodynamics.F thermodynamics.F; fi if [ ! -L timestep.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep.F timestep.F; fi if [ ! -L timestep_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_tracer.F timestep_tracer.F; fi if [ ! -L timestep_wvel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_wvel.F timestep_wvel.F; fi if [ ! -L tracers_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_correction_step.F tracers_correction_step.F; fi if [ ! -L tracers_iigw_correction.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_iigw_correction.F tracers_iigw_correction.F; fi if [ ! -L turnoff_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/turnoff_model_io.F turnoff_model_io.F; fi if [ ! -L update_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_cg2d.F update_cg2d.F; fi if [ ! -L update_etah.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etah.F update_etah.F; fi if [ ! -L update_etaws.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etaws.F update_etaws.F; fi if [ ! -L update_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_masks_etc.F update_masks_etc.F; fi if [ ! -L update_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_r_star.F update_r_star.F; fi if [ ! -L update_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_sigma.F update_sigma.F; fi if [ ! -L update_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_surf_dr.F update_surf_dr.F; fi if [ ! -L write_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_grid.F write_grid.F; fi if [ ! -L write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_pickup.F write_pickup.F; fi if [ ! -L write_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_state.F write_state.F; fi if [ ! -L gsl_ieee_env.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsl_ieee_env.c gsl_ieee_env.c; fi if [ ! -L ptwrapper.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ptwrapper.c ptwrapper.c; fi if [ ! -L setdir.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setdir.c setdir.c; fi if [ ! -L setrlstk.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setrlstk.c setrlstk.c; fi if [ ! -L sigreg.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/sigreg.c sigreg.c; fi if [ ! -L tim.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/tim.c tim.c; fi if [ ! -L timer_stats.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timer_stats.c timer_stats.c; fi if [ ! -L CPP_EEOPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h CPP_EEOPTIONS.h; fi if [ ! -L SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/SIZE.h SIZE.h; fi if [ ! -L DEBUG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/DEBUG_OPTIONS.h DEBUG_OPTIONS.h; fi if [ ! -L DIAGNOSTICS_CALC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_CALC.h DIAGNOSTICS_CALC.h; fi if [ ! -L DIAGNOSTICS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS.h DIAGNOSTICS.h; fi if [ ! -L DIAGNOSTICS_SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_SIZE.h DIAGNOSTICS_SIZE.h; fi if [ ! -L DIAG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAG_OPTIONS.h DIAG_OPTIONS.h; fi if [ ! -L DIAGSTATS_REGIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGSTATS_REGIONS.h DIAGSTATS_REGIONS.h; fi if [ ! -L gad_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev1_dir.h gad_ad_check_lev1_dir.h; fi if [ ! -L gad_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev2_dir.h gad_ad_check_lev2_dir.h; fi if [ ! -L gad_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev3_dir.h gad_ad_check_lev3_dir.h; fi if [ ! -L gad_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev4_dir.h gad_ad_check_lev4_dir.h; fi if [ ! -L GAD_FLUX_LIMITER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_FLUX_LIMITER.h GAD_FLUX_LIMITER.h; fi if [ ! -L GAD.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD.h GAD.h; fi if [ ! -L GAD_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_OPTIONS.h GAD_OPTIONS.h; fi if [ ! -L GAD_SOM_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_SOM_VARS.h GAD_SOM_VARS.h; fi if [ ! -L MDSIO_BUFF_3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_3D.h MDSIO_BUFF_3D.h; fi if [ ! -L MDSIO_BUFF_WH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_WH.h MDSIO_BUFF_WH.h; fi if [ ! -L MDSIO_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_OPTIONS.h MDSIO_OPTIONS.h; fi if [ ! -L MOM_COMMON_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_COMMON_OPTIONS.h MOM_COMMON_OPTIONS.h; fi if [ ! -L MOM_VISC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_VISC.h MOM_VISC.h; fi if [ ! -L MOM_FLUXFORM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM.h MOM_FLUXFORM.h; fi if [ ! -L MOM_FLUXFORM_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MOM_FLUXFORM_OPTIONS.h; fi if [ ! -L MOM_VECINV_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MOM_VECINV_OPTIONS.h; fi if [ ! -L MONITOR.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR.h MONITOR.h; fi if [ ! -L MONITOR_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR_OPTIONS.h MONITOR_OPTIONS.h; fi if [ ! -L obcs_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev1_dir.h obcs_ad_check_lev1_dir.h; fi if [ ! -L obcs_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev2_dir.h obcs_ad_check_lev2_dir.h; fi if [ ! -L obcs_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev3_dir.h obcs_ad_check_lev3_dir.h; fi if [ ! -L obcs_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev4_dir.h obcs_ad_check_lev4_dir.h; fi if [ ! -L OBCS_FIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_FIELDS.h OBCS_FIELDS.h; fi if [ ! -L OBCS_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_GRID.h OBCS_GRID.h; fi if [ ! -L OBCS_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_OPTIONS.h OBCS_OPTIONS.h; fi if [ ! -L OBCS_PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PARAMS.h OBCS_PARAMS.h; fi if [ ! -L OBCS_PTRACERS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PTRACERS.h OBCS_PTRACERS.h; fi if [ ! -L OBCS_SEAICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_SEAICE.h OBCS_SEAICE.h; fi if [ ! -L ORLANSKI.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/ORLANSKI.h ORLANSKI.h; fi if [ ! -L RW_MFLDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_MFLDS.h RW_MFLDS.h; fi if [ ! -L RW_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_OPTIONS.h RW_OPTIONS.h; fi if [ ! -L shelfice_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev1_dir.h shelfice_ad_check_lev1_dir.h; fi if [ ! -L shelfice_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev2_dir.h shelfice_ad_check_lev2_dir.h; fi if [ ! -L shelfice_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev3_dir.h shelfice_ad_check_lev3_dir.h; fi if [ ! -L shelfice_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev4_dir.h shelfice_ad_check_lev4_dir.h; fi if [ ! -L SHELFICE_COST.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_COST.h SHELFICE_COST.h; fi if [ ! -L SHELFICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE.h SHELFICE.h; fi if [ ! -L SHELFICE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_OPTIONS.h SHELFICE_OPTIONS.h; fi if [ ! -L SHELFICE_TAVE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_TAVE.h SHELFICE_TAVE.h; fi if [ ! -L TIMEAVE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_OPTIONS.h TIMEAVE_OPTIONS.h; fi if [ ! -L TIMEAVE_STATV.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_STATV.h TIMEAVE_STATV.h; fi if [ ! -L cmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_c.h cmumps_c.h; fi if [ ! -L cmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_root.h cmumps_root.h; fi if [ ! -L cmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_struc.h cmumps_struc.h; fi if [ ! -L dmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_c.h dmumps_c.h; fi if [ ! -L dmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_root.h dmumps_root.h; fi if [ ! -L dmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_struc.h dmumps_struc.h; fi if [ ! -L gklib_defs.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_defs.h gklib_defs.h; fi if [ ! -L gklib_rename.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_rename.h gklib_rename.h; fi if [ ! -L gklib_tls.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_tls.h gklib_tls.h; fi if [ ! -L metis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/metis.h metis.h; fi if [ ! -L mpicxx.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpicxx.h mpicxx.h; fi if [ ! -L mpif.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpif.h mpif.h; fi if [ ! -L mpi.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi.h mpi.h; fi if [ ! -L mpiof.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpiof.h mpiof.h; fi if [ ! -L mpio.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpio.h mpio.h; fi if [ ! -L mpi_proto.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi_proto.h mpi_proto.h; fi if [ ! -L mumps_compat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_compat.h mumps_compat.h; fi if [ ! -L mumps_c_types.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_c_types.h mumps_c_types.h; fi if [ ! -L mumps_int_def.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_int_def.h mumps_int_def.h; fi if [ ! -L parmetis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/parmetis.h parmetis.h; fi if [ ! -L petscao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscao.h petscao.h; fi if [ ! -L petscbag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbag.h petscbag.h; fi if [ ! -L petscblaslapack.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack.h petscblaslapack.h; fi if [ ! -L petscblaslapack_mangle.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack_mangle.h petscblaslapack_mangle.h; fi if [ ! -L petscbt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbt.h petscbt.h; fi if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi if [ ! -L petscctable.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscctable.h petscctable.h; fi if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi if [ ! -L ricehdf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/ricehdf.h ricehdf.h; fi if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi if [ ! -L szip_adpt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/szip_adpt.h szip_adpt.h; fi if [ ! -L szlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/szlib.h szlib.h; fi if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi Creating FC_NAMEMANGLE.h ... echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h Creating BUILD_INFO.h ... echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h echo "#define THISDATE 'Thu 02 May 2024 11:04:03 AM PDT'" >> BUILD_INFO.h echo "#define THISHOST 'debian-linux-vm'" >> BUILD_INFO.h make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/8/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F Appending dependencies to Makefile /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile WARNING: f90mkdepend: no source file found for module `petscdtbinomial()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `petsccalla()`. WARNING: f90mkdepend: no source file found for module `chkmema` WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()` WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser` WARNING: f90mkdepend: no source file found for module this WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()` WARNING: f90mkdepend: no source file found for module `petsc_null_integer` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module the WARNING: f90mkdepend: no source file found for module `petscclassidregister()` WARNING: f90mkdepend: no source file found for module `petsccount_fmt` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()` rm -f makedepend.out [41;37m step #6: RunUncoupledMITgcm [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END [41;37m step #7: CreateMesh [0m Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0) saving model as: Models/IceOcean.CreateMesh [41;37m step #8: MeshGeometry [0m saving model as: Models/IceOcean.MeshGeometry [41;37m step #9: ParameterizeIce [0m saving model as: Models/IceOcean.ParameterizeIce [41;37m step #10: RunUncoupledISSM [0m checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/12 time [yr]: 0.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 2/12 time [yr]: 0.17 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 3/12 time [yr]: 0.25 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 4/12 time [yr]: 0.33 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 5/12 time [yr]: 0.42 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 6/12 time [yr]: 0.50 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 7/12 time [yr]: 0.58 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 8/12 time [yr]: 0.67 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 9/12 time [yr]: 0.75 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 10/12 time [yr]: 0.83 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 11/12 time [yr]: 0.92 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 12/12 time [yr]: 1.00 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.453481 Total Core solution elapsed time: 3.92019 Linear solver elapsed time: 2.49799 (64%) Total elapsed time: 0 hrs 0 min 4 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster saving model as: Models/IceOcean.RunUncoupledISSM [41;37m step #11: RunCoupledMITgcmISSM [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0320182 Total Core solution elapsed time: 0.505344 Linear solver elapsed time: 0.315868 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.17 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0338459 Total Core solution elapsed time: 0.24769 Linear solver elapsed time: 0.152284 (61%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.25 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0360807 Total Core solution elapsed time: 0.260535 Linear solver elapsed time: 0.161524 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.33 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0309222 Total Core solution elapsed time: 0.252069 Linear solver elapsed time: 0.153558 (61%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.42 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0350569 Total Core solution elapsed time: 0.257632 Linear solver elapsed time: 0.161424 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.50 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0343568 Total Core solution elapsed time: 0.233685 Linear solver elapsed time: 0.14725 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.58 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0273514 Total Core solution elapsed time: 0.228514 Linear solver elapsed time: 0.144951 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/2 time [yr]: 0.67 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0341964 Total Core solution elapsed time: 0.235423 Linear solver elapsed time: 0.148018 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.75 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0425421 Total Core solution elapsed time: 0.218524 Linear solver elapsed time: 0.138282 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.83 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0282027 Total Core solution elapsed time: 0.203325 Linear solver elapsed time: 0.126187 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/2 time [yr]: 0.92 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0289135 Total Core solution elapsed time: 0.192366 Linear solver elapsed time: 0.124995 (65%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 1.00 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0332541 Total Core solution elapsed time: 0.228748 Linear solver elapsed time: 0.142576 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 1.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0269138 Total Core solution elapsed time: 0.197216 Linear solver elapsed time: 0.123138 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster saving model as: Models/IceOcean.RunCoupledMITgcmISSM SUCCESS difference: 0 < 2e-13 test id: 4001 test name: IceOcean field: Base1 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: Melting1 SUCCESS difference: 1.2e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx2 SUCCESS difference: 1.6e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy2 SUCCESS difference: 1.1e-15 < 2e-07 test id: 4001 test name: IceOcean field: Thickness2 SUCCESS difference: 2.1e-16 < 2e-08 test id: 4001 test name: IceOcean field: Base2 SUCCESS difference: 3.4e-16 < 3e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset2 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate2 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: Melting2 SUCCESS difference: 1e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx3 SUCCESS difference: 1.2e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy3 SUCCESS difference: 2.1e-15 < 4e-07 test id: 4001 test name: IceOcean field: Thickness3 SUCCESS difference: 5e-16 < 3e-08 test id: 4001 test name: IceOcean field: Base3 SUCCESS difference: 3.4e-16 < 5e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset3 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate3 SUCCESS difference: 0 < 6e-08 test id: 4001 test name: IceOcean field: Melting3 SUCCESS difference: 1.6e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx4 SUCCESS difference: 1.8e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy4 SUCCESS difference: 2.5e-15 < 5e-07 test id: 4001 test name: IceOcean field: Thickness4 SUCCESS difference: 5.7e-16 < 4e-08 test id: 4001 test name: IceOcean field: Base4 SUCCESS difference: 3.9e-16 < 8e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset4 SUCCESS difference: 0 < 6e-08 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate4 SUCCESS difference: 0 < 3e-07 test id: 4001 test name: IceOcean field: Melting4 +++ exit code: 0 +++ error: 0 +++ Running case: MATLAB-4001 +++ working dir: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog [41;37m step #1: Parameters [0m saving data in: Models/IceOcean.Parameters [41;37m step #2: Bathymetry [0m saving data in: Models/IceOcean.Bathymetry [41;37m step #3: IceSheetGeometry [0m saving data in: Models/IceOcean.IceSheetGeometry [41;37m step #4: GetMITgcm [0m --2024-05-02 11:03:49-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz Resolving github.com (github.com)... 140.82.116.3 Connecting to github.com (github.com)|140.82.116.3|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following] --2024-05-02 11:03:49-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i Resolving codeload.github.com (codeload.github.com)... 140.82.116.10 Connecting to codeload.github.com (codeload.github.com)|140.82.116.10|:443... connected. 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MITgcm-checkpoint68i/eesupp/src/nml_change_syntax.F MITgcm-checkpoint68i/eesupp/src/nml_set_terminator.F MITgcm-checkpoint68i/eesupp/src/open_copy_data_file.F MITgcm-checkpoint68i/eesupp/src/print.F MITgcm-checkpoint68i/eesupp/src/ptwrapper.c MITgcm-checkpoint68i/eesupp/src/reset_halo.F MITgcm-checkpoint68i/eesupp/src/scatter_2d_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_vec_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_xz.F MITgcm-checkpoint68i/eesupp/src/scatter_yz.F MITgcm-checkpoint68i/eesupp/src/setdir.c MITgcm-checkpoint68i/eesupp/src/setrlstk.c MITgcm-checkpoint68i/eesupp/src/sigreg.c MITgcm-checkpoint68i/eesupp/src/stop_if_error.F MITgcm-checkpoint68i/eesupp/src/tim.c MITgcm-checkpoint68i/eesupp/src/timer_stats.c MITgcm-checkpoint68i/eesupp/src/timers.F MITgcm-checkpoint68i/eesupp/src/utils.F MITgcm-checkpoint68i/eesupp/src/write_utils.F MITgcm-checkpoint68i/jobs/ MITgcm-checkpoint68i/jobs/run_mitgcm_aer.csh MITgcm-checkpoint68i/jobs/run_mitgcm_eaps.csh MITgcm-checkpoint68i/jobs/run_mitgcm_gfdl.csh MITgcm-checkpoint68i/jobs/run_mitgcm_itrda.csh MITgcm-checkpoint68i/jobs/run_mitgcm_sp4_bluesky.csh MITgcm-checkpoint68i/jobs/run_optim.csh MITgcm-checkpoint68i/lsopt/ MITgcm-checkpoint68i/lsopt/Makefile MITgcm-checkpoint68i/lsopt/Makefile_macosx MITgcm-checkpoint68i/lsopt/README.md MITgcm-checkpoint68i/lsopt/blas1.h MITgcm-checkpoint68i/lsopt/cubic.F MITgcm-checkpoint68i/lsopt/data.ctrl MITgcm-checkpoint68i/lsopt/data.ecco MITgcm-checkpoint68i/lsopt/data.optim MITgcm-checkpoint68i/lsopt/dgscale.F MITgcm-checkpoint68i/lsopt/dostore.F MITgcm-checkpoint68i/lsopt/hessupd.F MITgcm-checkpoint68i/lsopt/instore.F MITgcm-checkpoint68i/lsopt/libblas1.a_IRIX64.gz MITgcm-checkpoint68i/lsopt/libblas1.a_SUN.gz MITgcm-checkpoint68i/lsopt/libgoto_it2-r0.95.so.gz MITgcm-checkpoint68i/lsopt/libgoto_p4_512-r0.94.so.gz MITgcm-checkpoint68i/lsopt/lsline.F MITgcm-checkpoint68i/lsopt/lsopt_doc.txt MITgcm-checkpoint68i/lsopt/lsopt_top.F MITgcm-checkpoint68i/lsopt/lsupdxx.F MITgcm-checkpoint68i/lsopt/lswri.F MITgcm-checkpoint68i/lsopt/outstore.F MITgcm-checkpoint68i/model/ MITgcm-checkpoint68i/model/inc/ MITgcm-checkpoint68i/model/inc/CG2D.h MITgcm-checkpoint68i/model/inc/CG3D.h MITgcm-checkpoint68i/model/inc/CPP_OPTIONS.h MITgcm-checkpoint68i/model/inc/DXC_MACROS.h MITgcm-checkpoint68i/model/inc/DXF_MACROS.h MITgcm-checkpoint68i/model/inc/DXG_MACROS.h MITgcm-checkpoint68i/model/inc/DXV_MACROS.h MITgcm-checkpoint68i/model/inc/DYC_MACROS.h MITgcm-checkpoint68i/model/inc/DYF_MACROS.h MITgcm-checkpoint68i/model/inc/DYG_MACROS.h MITgcm-checkpoint68i/model/inc/DYNVARS.h MITgcm-checkpoint68i/model/inc/DYU_MACROS.h MITgcm-checkpoint68i/model/inc/EOS.h MITgcm-checkpoint68i/model/inc/FCORI_MACROS.h MITgcm-checkpoint68i/model/inc/FFIELDS.h MITgcm-checkpoint68i/model/inc/GRID.h MITgcm-checkpoint68i/model/inc/GRID_MACROS.h 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MITgcm-checkpoint68i/model/inc/RESTART.h MITgcm-checkpoint68i/model/inc/SET_GRID.h MITgcm-checkpoint68i/model/inc/SIZE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE3D.h MITgcm-checkpoint68i/model/inc/SURFACE.h MITgcm-checkpoint68i/model/inc/TANPHIATU_MACROS.h MITgcm-checkpoint68i/model/inc/TANPHIATV_MACROS.h MITgcm-checkpoint68i/model/inc/THE_MODEL_COMMON_BLOCKS.h MITgcm-checkpoint68i/model/inc/XC_MACROS.h MITgcm-checkpoint68i/model/inc/YC_MACROS.h MITgcm-checkpoint68i/model/src/ MITgcm-checkpoint68i/model/src/adams_bashforth2.F MITgcm-checkpoint68i/model/src/adams_bashforth3.F MITgcm-checkpoint68i/model/src/add_walls2masks.F MITgcm-checkpoint68i/model/src/apply_forcing.F MITgcm-checkpoint68i/model/src/calc_3d_diffusivity.F MITgcm-checkpoint68i/model/src/calc_adv_flow.F MITgcm-checkpoint68i/model/src/calc_div_ghat.F MITgcm-checkpoint68i/model/src/calc_eddy_stress.F MITgcm-checkpoint68i/model/src/calc_grad_phi_fv.F MITgcm-checkpoint68i/model/src/calc_grad_phi_hyd.F MITgcm-checkpoint68i/model/src/calc_grad_phi_surf.F MITgcm-checkpoint68i/model/src/calc_grid_angles.F MITgcm-checkpoint68i/model/src/calc_gw.F MITgcm-checkpoint68i/model/src/calc_ivdc.F MITgcm-checkpoint68i/model/src/calc_oce_mxlayer.F MITgcm-checkpoint68i/model/src/calc_phi_hyd.F MITgcm-checkpoint68i/model/src/calc_r_star.F MITgcm-checkpoint68i/model/src/calc_surf_dr.F MITgcm-checkpoint68i/model/src/calc_viscosity.F MITgcm-checkpoint68i/model/src/calc_wsurf_tr.F MITgcm-checkpoint68i/model/src/cg2d.F MITgcm-checkpoint68i/model/src/cg2d_ex0.F MITgcm-checkpoint68i/model/src/cg2d_nsa.F MITgcm-checkpoint68i/model/src/cg2d_sr.F MITgcm-checkpoint68i/model/src/cg3d.F MITgcm-checkpoint68i/model/src/cg3d_ex0.F MITgcm-checkpoint68i/model/src/check_pickup.F MITgcm-checkpoint68i/model/src/config_check.F MITgcm-checkpoint68i/model/src/config_summary.F MITgcm-checkpoint68i/model/src/convective_adjustment.F MITgcm-checkpoint68i/model/src/convective_adjustment_ini.F MITgcm-checkpoint68i/model/src/convective_weights.F MITgcm-checkpoint68i/model/src/convectively_mixtracer.F MITgcm-checkpoint68i/model/src/correction_step.F MITgcm-checkpoint68i/model/src/cycle_ab_tracer.F MITgcm-checkpoint68i/model/src/cycle_tracer.F MITgcm-checkpoint68i/model/src/diags_oceanic_surf_flux.F MITgcm-checkpoint68i/model/src/diags_phi_hyd.F MITgcm-checkpoint68i/model/src/diags_phi_rlow.F MITgcm-checkpoint68i/model/src/diags_rho.F MITgcm-checkpoint68i/model/src/diags_sound_speed.F MITgcm-checkpoint68i/model/src/do_atmospheric_phys.F MITgcm-checkpoint68i/model/src/do_fields_blocking_exchanges.F MITgcm-checkpoint68i/model/src/do_oceanic_phys.F MITgcm-checkpoint68i/model/src/do_stagger_fields_exchanges.F MITgcm-checkpoint68i/model/src/do_statevars_diags.F MITgcm-checkpoint68i/model/src/do_statevars_tave.F MITgcm-checkpoint68i/model/src/do_the_model_io.F MITgcm-checkpoint68i/model/src/do_write_pickup.F MITgcm-checkpoint68i/model/src/dynamics.F MITgcm-checkpoint68i/model/src/external_fields_load.F MITgcm-checkpoint68i/model/src/external_forcing.F MITgcm-checkpoint68i/model/src/external_forcing_surf.F MITgcm-checkpoint68i/model/src/find_alpha.F MITgcm-checkpoint68i/model/src/find_hyd_press_1d.F MITgcm-checkpoint68i/model/src/find_rho.F MITgcm-checkpoint68i/model/src/forcing_surf_relax.F MITgcm-checkpoint68i/model/src/forward_step.F MITgcm-checkpoint68i/model/src/freesurf_rescale_g.F MITgcm-checkpoint68i/model/src/freeze_surface.F MITgcm-checkpoint68i/model/src/grad_sigma.F MITgcm-checkpoint68i/model/src/gsw_teos10.F MITgcm-checkpoint68i/model/src/impldiff.F MITgcm-checkpoint68i/model/src/ini_cartesian_grid.F MITgcm-checkpoint68i/model/src/ini_cg2d.F MITgcm-checkpoint68i/model/src/ini_cg3d.F MITgcm-checkpoint68i/model/src/ini_cori.F MITgcm-checkpoint68i/model/src/ini_curvilinear_grid.F MITgcm-checkpoint68i/model/src/ini_cylinder_grid.F MITgcm-checkpoint68i/model/src/ini_depths.F MITgcm-checkpoint68i/model/src/ini_dynvars.F MITgcm-checkpoint68i/model/src/ini_eos.F MITgcm-checkpoint68i/model/src/ini_ffields.F MITgcm-checkpoint68i/model/src/ini_fields.F MITgcm-checkpoint68i/model/src/ini_forcing.F MITgcm-checkpoint68i/model/src/ini_global_domain.F MITgcm-checkpoint68i/model/src/ini_grid.F MITgcm-checkpoint68i/model/src/ini_linear_phisurf.F MITgcm-checkpoint68i/model/src/ini_local_grid.F MITgcm-checkpoint68i/model/src/ini_masks_etc.F MITgcm-checkpoint68i/model/src/ini_mixing.F MITgcm-checkpoint68i/model/src/ini_mnc_vars.F MITgcm-checkpoint68i/model/src/ini_model_io.F MITgcm-checkpoint68i/model/src/ini_nh_fields.F MITgcm-checkpoint68i/model/src/ini_nh_vars.F MITgcm-checkpoint68i/model/src/ini_nlfs_vars.F MITgcm-checkpoint68i/model/src/ini_p_ground.F MITgcm-checkpoint68i/model/src/ini_parms.F MITgcm-checkpoint68i/model/src/ini_pressure.F MITgcm-checkpoint68i/model/src/ini_psurf.F MITgcm-checkpoint68i/model/src/ini_salt.F 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MITgcm-checkpoint68i/model/src/packages_init_variables.F MITgcm-checkpoint68i/model/src/packages_print_msg.F MITgcm-checkpoint68i/model/src/packages_readparms.F MITgcm-checkpoint68i/model/src/packages_unused_msg.F MITgcm-checkpoint68i/model/src/packages_write_pickup.F MITgcm-checkpoint68i/model/src/plot_field.F MITgcm-checkpoint68i/model/src/port_rand.F MITgcm-checkpoint68i/model/src/post_cg3d.F MITgcm-checkpoint68i/model/src/pre_cg3d.F MITgcm-checkpoint68i/model/src/pressure_for_eos.F MITgcm-checkpoint68i/model/src/read_pickup.F MITgcm-checkpoint68i/model/src/remove_mean.F MITgcm-checkpoint68i/model/src/reset_nlfs_vars.F MITgcm-checkpoint68i/model/src/rotate_spherical_polar_grid.F MITgcm-checkpoint68i/model/src/rotate_uv2en.F MITgcm-checkpoint68i/model/src/salt_integrate.F MITgcm-checkpoint68i/model/src/seawater.F MITgcm-checkpoint68i/model/src/set_defaults.F MITgcm-checkpoint68i/model/src/set_grid_factors.F MITgcm-checkpoint68i/model/src/set_parms.F MITgcm-checkpoint68i/model/src/set_ref_state.F MITgcm-checkpoint68i/model/src/solve_for_pressure.F MITgcm-checkpoint68i/model/src/solve_pentadiagonal.F MITgcm-checkpoint68i/model/src/solve_tridiagonal.F MITgcm-checkpoint68i/model/src/solve_uv_tridiago.F MITgcm-checkpoint68i/model/src/state_summary.F MITgcm-checkpoint68i/model/src/swfrac.F MITgcm-checkpoint68i/model/src/taueddy_init_varia.F MITgcm-checkpoint68i/model/src/taueddy_tendency_apply.F MITgcm-checkpoint68i/model/src/temp_integrate.F MITgcm-checkpoint68i/model/src/the_main_loop.F MITgcm-checkpoint68i/model/src/the_model_main.F MITgcm-checkpoint68i/model/src/thermodynamics.F MITgcm-checkpoint68i/model/src/timestep.F MITgcm-checkpoint68i/model/src/timestep_tracer.F MITgcm-checkpoint68i/model/src/timestep_wvel.F MITgcm-checkpoint68i/model/src/tracers_correction_step.F MITgcm-checkpoint68i/model/src/tracers_iigw_correction.F MITgcm-checkpoint68i/model/src/turnoff_model_io.F MITgcm-checkpoint68i/model/src/update_cg2d.F MITgcm-checkpoint68i/model/src/update_etah.F MITgcm-checkpoint68i/model/src/update_etaws.F MITgcm-checkpoint68i/model/src/update_masks_etc.F MITgcm-checkpoint68i/model/src/update_r_star.F MITgcm-checkpoint68i/model/src/update_sigma.F MITgcm-checkpoint68i/model/src/update_surf_dr.F MITgcm-checkpoint68i/model/src/write_grid.F MITgcm-checkpoint68i/model/src/write_pickup.F MITgcm-checkpoint68i/model/src/write_state.F MITgcm-checkpoint68i/optim/ MITgcm-checkpoint68i/optim/Makefile MITgcm-checkpoint68i/optim/Makefile_macosx MITgcm-checkpoint68i/optim/README.md MITgcm-checkpoint68i/optim/blas1.h MITgcm-checkpoint68i/optim/data.ctrl MITgcm-checkpoint68i/optim/data.ecco MITgcm-checkpoint68i/optim/data.optim MITgcm-checkpoint68i/optim/flowchart_optim.txt MITgcm-checkpoint68i/optim/minimization.h MITgcm-checkpoint68i/optim/optim.h MITgcm-checkpoint68i/optim/optim_initmod.F MITgcm-checkpoint68i/optim/optim_main.F MITgcm-checkpoint68i/optim/optim_numbmod.F MITgcm-checkpoint68i/optim/optim_readdata.F MITgcm-checkpoint68i/optim/optim_sub.F MITgcm-checkpoint68i/optim/optim_write_control.F MITgcm-checkpoint68i/optim/optim_writedata.F MITgcm-checkpoint68i/optim/simul.F MITgcm-checkpoint68i/optim/to_do.txt MITgcm-checkpoint68i/optim/utils.F MITgcm-checkpoint68i/optim/xerbla.F MITgcm-checkpoint68i/pkg/ MITgcm-checkpoint68i/pkg/admtlm/ MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h MITgcm-checkpoint68i/pkg/aim_v23/ MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_surf_bc.F MITgcm-checkpoint68i/pkg/aim_v23/aim_tendency_apply.F MITgcm-checkpoint68i/pkg/aim_v23/aim_v23_description.tex MITgcm-checkpoint68i/pkg/aim_v23/aim_write_local.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_phys.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_tave.F MITgcm-checkpoint68i/pkg/aim_v23/com_cnvcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcing.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_lsccon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_radcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_radvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_sflcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_vdicon.h MITgcm-checkpoint68i/pkg/aim_v23/phy_const.h MITgcm-checkpoint68i/pkg/aim_v23/phy_convmf.F MITgcm-checkpoint68i/pkg/aim_v23/phy_driver.F MITgcm-checkpoint68i/pkg/aim_v23/phy_inphys.F MITgcm-checkpoint68i/pkg/aim_v23/phy_lscond.F MITgcm-checkpoint68i/pkg/aim_v23/phy_radiat.F MITgcm-checkpoint68i/pkg/aim_v23/phy_shtorh.F MITgcm-checkpoint68i/pkg/aim_v23/phy_snow_precip.F MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_land.F MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_ocean.F MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_post.F MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_prep.F MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_sice.F MITgcm-checkpoint68i/pkg/aim_v23/phy_vdifsc.F MITgcm-checkpoint68i/pkg/atm2d/ MITgcm-checkpoint68i/pkg/atm2d/AGRID.h MITgcm-checkpoint68i/pkg/atm2d/ATM2D_OPTIONS.h MITgcm-checkpoint68i/pkg/atm2d/ATM2D_VARS.h MITgcm-checkpoint68i/pkg/atm2d/ATMSIZE.h MITgcm-checkpoint68i/pkg/atm2d/CPLIDS.h MITgcm-checkpoint68i/pkg/atm2d/DRIVER.h MITgcm-checkpoint68i/pkg/atm2d/OCNIDS.h MITgcm-checkpoint68i/pkg/atm2d/OCNSIZE.h MITgcm-checkpoint68i/pkg/atm2d/OCNVARS.h MITgcm-checkpoint68i/pkg/atm2d/accept_component_registrations.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_finish.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_init_fixed.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_init_vars.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_read_pickup.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_readparms.F MITgcm-checkpoint68i/pkg/atm2d/atm2d_write_pickup.F MITgcm-checkpoint68i/pkg/atm2d/atm2ocn_main.F MITgcm-checkpoint68i/pkg/atm2d/calc_1dto2d.F MITgcm-checkpoint68i/pkg/atm2d/calc_fileload.F MITgcm-checkpoint68i/pkg/atm2d/calc_zonal_means.F MITgcm-checkpoint68i/pkg/atm2d/cpl_recv_ocn_fields.F MITgcm-checkpoint68i/pkg/atm2d/cpl_recv_ocn_ocnconfig.F MITgcm-checkpoint68i/pkg/atm2d/cpl_register_ocn.F MITgcm-checkpoint68i/pkg/atm2d/cpl_send_ocn_atmconfig.F MITgcm-checkpoint68i/pkg/atm2d/cpl_send_ocn_fields.F MITgcm-checkpoint68i/pkg/atm2d/ctrparam.h MITgcm-checkpoint68i/pkg/atm2d/exch_component_configs.F MITgcm-checkpoint68i/pkg/atm2d/fixed_flux_add.F MITgcm-checkpoint68i/pkg/atm2d/forward_step_atm2d.F MITgcm-checkpoint68i/pkg/atm2d/get_ocnvars.F MITgcm-checkpoint68i/pkg/atm2d/init_atm2d.F MITgcm-checkpoint68i/pkg/atm2d/init_sumvars.F MITgcm-checkpoint68i/pkg/atm2d/initialise.F MITgcm-checkpoint68i/pkg/atm2d/month_end_diags.F MITgcm-checkpoint68i/pkg/atm2d/norm_ocn_fluxes.F MITgcm-checkpoint68i/pkg/atm2d/pass_thsice_fluxes.F MITgcm-checkpoint68i/pkg/atm2d/put_ocnvars.F MITgcm-checkpoint68i/pkg/atm2d/read_atmos.F MITgcm-checkpoint68i/pkg/atm2d/relax_add.F MITgcm-checkpoint68i/pkg/atm2d/subtract_means.F MITgcm-checkpoint68i/pkg/atm2d/sum_ocn_fluxes.F MITgcm-checkpoint68i/pkg/atm2d/sum_thsice_out.F MITgcm-checkpoint68i/pkg/atm2d/sum_yr_end_diags.F MITgcm-checkpoint68i/pkg/atm2d/tave_end_diags.F MITgcm-checkpoint68i/pkg/atm2d/yr_end_diags.F MITgcm-checkpoint68i/pkg/atm_common/ MITgcm-checkpoint68i/pkg/atm_common/ATM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/atm_common/atm_diagnostics_init.F MITgcm-checkpoint68i/pkg/atm_compon_interf/ MITgcm-checkpoint68i/pkg/atm_compon_interf/ATMCPL.h MITgcm-checkpoint68i/pkg/atm_compon_interf/ATM_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/atm_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_apply_import.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_check_cplconfig.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_atmconfig.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_fields.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_fld.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_get_atmconfig.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_import_fields.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_import_ocnconfig.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_aim_fields.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_aim_wndstr.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_dynvars.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_land.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_my_data.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_surfflux.F MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_thsice.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/atm_ocn_coupler/ 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MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_tile_ad.F MITgcm-checkpoint68i/pkg/autodiff/initialisation.flow MITgcm-checkpoint68i/pkg/autodiff/model_ad.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.F MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction_ad.F MITgcm-checkpoint68i/pkg/autodiff/system.flow MITgcm-checkpoint68i/pkg/autodiff/tamc.h MITgcm-checkpoint68i/pkg/autodiff/zero_adj.F MITgcm-checkpoint68i/pkg/autodiff/zero_adj.flow MITgcm-checkpoint68i/pkg/bbl/ MITgcm-checkpoint68i/pkg/bbl/BBL.h MITgcm-checkpoint68i/pkg/bbl/BBL_OPTIONS.h MITgcm-checkpoint68i/pkg/bbl/bbl_ad.flow MITgcm-checkpoint68i/pkg/bbl/bbl_ad_diff.list 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MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_diff.list MITgcm-checkpoint68i/pkg/bling/bling_airseaflux.F MITgcm-checkpoint68i/pkg/bling/bling_bio.F MITgcm-checkpoint68i/pkg/bling/bling_bio_nitrogen.F MITgcm-checkpoint68i/pkg/bling/bling_carbon_chem.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_init.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_sys.F MITgcm-checkpoint68i/pkg/bling/bling_description.txt MITgcm-checkpoint68i/pkg/bling/bling_diagnostics_init.F MITgcm-checkpoint68i/pkg/bling/bling_fields_load.F MITgcm-checkpoint68i/pkg/bling/bling_ini_forcing.F MITgcm-checkpoint68i/pkg/bling/bling_init_fixed.F MITgcm-checkpoint68i/pkg/bling/bling_init_varia.F MITgcm-checkpoint68i/pkg/bling/bling_light.F MITgcm-checkpoint68i/pkg/bling/bling_main.F MITgcm-checkpoint68i/pkg/bling/bling_min_val.F MITgcm-checkpoint68i/pkg/bling/bling_mixedlayer.F MITgcm-checkpoint68i/pkg/bling/bling_read_pickup.F MITgcm-checkpoint68i/pkg/bling/bling_readparms.F MITgcm-checkpoint68i/pkg/bling/bling_sgs.F MITgcm-checkpoint68i/pkg/bling/bling_solvesaphe.F MITgcm-checkpoint68i/pkg/bling/bling_tr_register.F MITgcm-checkpoint68i/pkg/bling/bling_write_pickup.F MITgcm-checkpoint68i/pkg/bulk_force/ MITgcm-checkpoint68i/pkg/bulk_force/BULKF.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_CONSERV.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_INT.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_PARAMS.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_TAVE.h MITgcm-checkpoint68i/pkg/bulk_force/BULK_FORCE_OPTIONS.h MITgcm-checkpoint68i/pkg/bulk_force/bulkf_ave.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_fields_load.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_flux_adjust.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_forcing.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_aim.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lanl.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lay.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_init_varia.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_output.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_readparms.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_sh2rh_aim.F MITgcm-checkpoint68i/pkg/cal/ MITgcm-checkpoint68i/pkg/cal/CAL_OPTIONS.h MITgcm-checkpoint68i/pkg/cal/cal.h MITgcm-checkpoint68i/pkg/cal/cal_ad_diff.list MITgcm-checkpoint68i/pkg/cal/cal_addtime.F MITgcm-checkpoint68i/pkg/cal/cal_checkdate.F MITgcm-checkpoint68i/pkg/cal/cal_compdates.F MITgcm-checkpoint68i/pkg/cal/cal_convdate.F MITgcm-checkpoint68i/pkg/cal/cal_copydate.F MITgcm-checkpoint68i/pkg/cal/cal_daysformonth.F MITgcm-checkpoint68i/pkg/cal/cal_dayspermonth.F MITgcm-checkpoint68i/pkg/cal/cal_description.tex MITgcm-checkpoint68i/pkg/cal/cal_fulldate.F MITgcm-checkpoint68i/pkg/cal/cal_getdate.F MITgcm-checkpoint68i/pkg/cal/cal_getmonthsrec.F MITgcm-checkpoint68i/pkg/cal/cal_init_fixed.F MITgcm-checkpoint68i/pkg/cal/cal_intdays.F MITgcm-checkpoint68i/pkg/cal/cal_intmonths.F MITgcm-checkpoint68i/pkg/cal/cal_intyears.F MITgcm-checkpoint68i/pkg/cal/cal_isleap.F MITgcm-checkpoint68i/pkg/cal/cal_monthsforyear.F MITgcm-checkpoint68i/pkg/cal/cal_monthsperyear.F MITgcm-checkpoint68i/pkg/cal/cal_numints.F MITgcm-checkpoint68i/pkg/cal/cal_printdate.F MITgcm-checkpoint68i/pkg/cal/cal_printerror.F MITgcm-checkpoint68i/pkg/cal/cal_readparms.F MITgcm-checkpoint68i/pkg/cal/cal_set.F MITgcm-checkpoint68i/pkg/cal/cal_stepsforday.F MITgcm-checkpoint68i/pkg/cal/cal_stepsperday.F MITgcm-checkpoint68i/pkg/cal/cal_subdates.F MITgcm-checkpoint68i/pkg/cal/cal_summary.F MITgcm-checkpoint68i/pkg/cal/cal_time2dump.F MITgcm-checkpoint68i/pkg/cal/cal_timeinterval.F MITgcm-checkpoint68i/pkg/cal/cal_timepassed.F MITgcm-checkpoint68i/pkg/cal/cal_timestamp.F MITgcm-checkpoint68i/pkg/cal/cal_toseconds.F MITgcm-checkpoint68i/pkg/cal/cal_weekday.F MITgcm-checkpoint68i/pkg/cd_code/ MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_OPTIONS.h 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MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_diff.list MITgcm-checkpoint68i/pkg/cfc/cfc_atmos.F MITgcm-checkpoint68i/pkg/cfc/cfc_check.F MITgcm-checkpoint68i/pkg/cfc/cfc_fields_load.F MITgcm-checkpoint68i/pkg/cfc/cfc_param.F MITgcm-checkpoint68i/pkg/cfc/cfc_readparms.F MITgcm-checkpoint68i/pkg/cfc/cfc_tr_register.F MITgcm-checkpoint68i/pkg/cheapaml/ MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML.h MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML_OPTIONS.h MITgcm-checkpoint68i/pkg/cheapaml/cheapaml.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_calc_rhs.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_coare3_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_copy_edges.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_diagnostics_init.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_fields_load.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_fixed.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_varia.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_lanl_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_read_pickup.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_readparms.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_seaice.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_timestep.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_write_pickup.F MITgcm-checkpoint68i/pkg/chronos/ MITgcm-checkpoint68i/pkg/chronos/chronos.F MITgcm-checkpoint68i/pkg/chronos/chronos.h MITgcm-checkpoint68i/pkg/compon_communic/ MITgcm-checkpoint68i/pkg/compon_communic/CPLR_SIG.h MITgcm-checkpoint68i/pkg/compon_communic/comprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/generate_tag.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_all_check.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2dbl.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2int.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2real.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_dbl2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init1.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2a.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2b.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_initcomp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_int2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_match_comp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_real2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_sortranks.F MITgcm-checkpoint68i/pkg/cost/ MITgcm-checkpoint68i/pkg/cost/COST_OPTIONS.h MITgcm-checkpoint68i/pkg/cost/adcost.h MITgcm-checkpoint68i/pkg/cost/cost.h MITgcm-checkpoint68i/pkg/cost/cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/cost/cost_ad.flow MITgcm-checkpoint68i/pkg/cost/cost_ad_diff.list MITgcm-checkpoint68i/pkg/cost/cost_atlantic_heat.F MITgcm-checkpoint68i/pkg/cost/cost_check.F MITgcm-checkpoint68i/pkg/cost/cost_dependent_init.F MITgcm-checkpoint68i/pkg/cost/cost_depth.F MITgcm-checkpoint68i/pkg/cost/cost_final.F MITgcm-checkpoint68i/pkg/cost/cost_final_restore.F MITgcm-checkpoint68i/pkg/cost/cost_final_store.F MITgcm-checkpoint68i/pkg/cost/cost_init_varia.F MITgcm-checkpoint68i/pkg/cost/cost_readparms.F MITgcm-checkpoint68i/pkg/cost/cost_state_final.F MITgcm-checkpoint68i/pkg/cost/cost_test.F MITgcm-checkpoint68i/pkg/cost/cost_tile.F MITgcm-checkpoint68i/pkg/cost/cost_tracer.F MITgcm-checkpoint68i/pkg/cost/cost_vector.F MITgcm-checkpoint68i/pkg/cost/g_cost.h MITgcm-checkpoint68i/pkg/ctrl/ MITgcm-checkpoint68i/pkg/ctrl/CTRL_FIELDS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_GENARR.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OBCS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OPTIONS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_SIZE.h MITgcm-checkpoint68i/pkg/ctrl/adctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_diff.list MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.flow MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound_tl.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_check.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_driver.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_gen.F 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MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_smooth.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_summary.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_swapffields.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_toolbox.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_unpack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_weights.h MITgcm-checkpoint68i/pkg/ctrl/optim.h MITgcm-checkpoint68i/pkg/ctrl/optim_readparms.F MITgcm-checkpoint68i/pkg/debug/ MITgcm-checkpoint68i/pkg/debug/DEBUG_OPTIONS.h MITgcm-checkpoint68i/pkg/debug/chksum_tiled.F MITgcm-checkpoint68i/pkg/debug/debug_ad.flow MITgcm-checkpoint68i/pkg/debug/debug_call.F MITgcm-checkpoint68i/pkg/debug/debug_cs_corner_uv.F MITgcm-checkpoint68i/pkg/debug/debug_enter.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rs.F MITgcm-checkpoint68i/pkg/debug/debug_leave.F 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MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_calc_phivel.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_field.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_state.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fract_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_early.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_fixed.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_varia.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_p2p.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_vert.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_is_on.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_list_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_main_init.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_read_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_readparms.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_setdiag.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_status_error.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_sum_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_summary.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_switch_onoff.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_utils.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_adj.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ascii_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_close_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_global.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_local.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_others_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_output.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_regions.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_setdiag.F MITgcm-checkpoint68i/pkg/dic/ MITgcm-checkpoint68i/pkg/dic/DIC_ATMOS.h MITgcm-checkpoint68i/pkg/dic/DIC_COST.h MITgcm-checkpoint68i/pkg/dic/DIC_CTRL.h MITgcm-checkpoint68i/pkg/dic/DIC_LOAD.h MITgcm-checkpoint68i/pkg/dic/DIC_OPTIONS.h MITgcm-checkpoint68i/pkg/dic/DIC_VARS.h MITgcm-checkpoint68i/pkg/dic/alk_surfforcing.F MITgcm-checkpoint68i/pkg/dic/bio_export.F MITgcm-checkpoint68i/pkg/dic/calcite_saturation.F MITgcm-checkpoint68i/pkg/dic/car_flux.F MITgcm-checkpoint68i/pkg/dic/car_flux_omega_top.F MITgcm-checkpoint68i/pkg/dic/carbon_chem.F MITgcm-checkpoint68i/pkg/dic/dic_ad.flow MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_diff.list MITgcm-checkpoint68i/pkg/dic/dic_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_diags.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_init.F MITgcm-checkpoint68i/pkg/dic/dic_cost.F MITgcm-checkpoint68i/pkg/dic/dic_diagnostics_init.F MITgcm-checkpoint68i/pkg/dic/dic_fields_load.F MITgcm-checkpoint68i/pkg/dic/dic_fields_update.F MITgcm-checkpoint68i/pkg/dic/dic_ini_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_ini_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_init_fixed.F MITgcm-checkpoint68i/pkg/dic/dic_init_varia.F MITgcm-checkpoint68i/pkg/dic/dic_mnc_init.F MITgcm-checkpoint68i/pkg/dic/dic_read_co2_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_read_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_readparms.F MITgcm-checkpoint68i/pkg/dic/dic_set_control.F MITgcm-checkpoint68i/pkg/dic/dic_solvesaphe.F MITgcm-checkpoint68i/pkg/dic/dic_store_fluxco2.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing_init.F MITgcm-checkpoint68i/pkg/dic/dic_tr_register.F MITgcm-checkpoint68i/pkg/dic/dic_write_pickup.F MITgcm-checkpoint68i/pkg/dic/fe_chem.F MITgcm-checkpoint68i/pkg/dic/insol.F MITgcm-checkpoint68i/pkg/dic/o2_surfforcing.F MITgcm-checkpoint68i/pkg/dic/phos_flux.F MITgcm-checkpoint68i/pkg/down_slope/ MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_OPTIONS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_PARAMS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_SIZE.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_VARS.h MITgcm-checkpoint68i/pkg/down_slope/dwnslp_ad_diff.list MITgcm-checkpoint68i/pkg/down_slope/dwnslp_apply.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_flow.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_rho.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_diagnostics_init.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_fixed.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_varia.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_readparms.F MITgcm-checkpoint68i/pkg/ebm/ MITgcm-checkpoint68i/pkg/ebm/EBM.h MITgcm-checkpoint68i/pkg/ebm/EBM_OPTIONS.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_diff.list MITgcm-checkpoint68i/pkg/ebm/ebm_area_t.F MITgcm-checkpoint68i/pkg/ebm/ebm_atmosphere.F MITgcm-checkpoint68i/pkg/ebm/ebm_driver.F MITgcm-checkpoint68i/pkg/ebm/ebm_ini_vars.F MITgcm-checkpoint68i/pkg/ebm/ebm_load_climatology.F MITgcm-checkpoint68i/pkg/ebm/ebm_readparms.F MITgcm-checkpoint68i/pkg/ebm/ebm_wind_perturb.F MITgcm-checkpoint68i/pkg/ebm/ebm_zonalmean.F MITgcm-checkpoint68i/pkg/ecco/ MITgcm-checkpoint68i/pkg/ecco/ECCO.h MITgcm-checkpoint68i/pkg/ecco/ECCO_OPTIONS.h MITgcm-checkpoint68i/pkg/ecco/ECCO_SIZE.h MITgcm-checkpoint68i/pkg/ecco/cost_averagesfields.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesflags.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesgeneric.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesinit.F MITgcm-checkpoint68i/pkg/ecco/cost_bp_read.F MITgcm-checkpoint68i/pkg/ecco/cost_forcing.F MITgcm-checkpoint68i/pkg/ecco/cost_gencal.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_all.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_assignperiod.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_boxmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_bpv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_customize.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_glbmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_moc.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_seaicev4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sshv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sstv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_transp.F MITgcm-checkpoint68i/pkg/ecco/cost_generic.F MITgcm-checkpoint68i/pkg/ecco/cost_genread.F MITgcm-checkpoint68i/pkg/ecco/cost_hyd.F MITgcm-checkpoint68i/pkg/ecco/cost_internal_params.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs_ageos.F MITgcm-checkpoint68i/pkg/ecco/cost_obcse.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsn.F MITgcm-checkpoint68i/pkg/ecco/cost_obcss.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsvol.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsw.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read_yd.F MITgcm-checkpoint68i/pkg/ecco/cost_ssh.F MITgcm-checkpoint68i/pkg/ecco/ecco_ad.flow MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_diff.list MITgcm-checkpoint68i/pkg/ecco/ecco_check.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost.h MITgcm-checkpoint68i/pkg/ecco/ecco_cost_driver.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_final.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_barfiles.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_weights.F MITgcm-checkpoint68i/pkg/ecco/ecco_diagnostics_init.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_local_params.h MITgcm-checkpoint68i/pkg/ecco/ecco_phys.F MITgcm-checkpoint68i/pkg/ecco/ecco_readparms.F MITgcm-checkpoint68i/pkg/ecco/ecco_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_toolbox.F MITgcm-checkpoint68i/pkg/ecco/stergloh_output.F MITgcm-checkpoint68i/pkg/embed_files/ MITgcm-checkpoint68i/pkg/embed_files/EMBED_FILES_OPTIONS.h MITgcm-checkpoint68i/pkg/embed_files/README.txt MITgcm-checkpoint68i/pkg/embed_files/decode_files.c MITgcm-checkpoint68i/pkg/embed_files/embed_files_init.F MITgcm-checkpoint68i/pkg/exch2/ MITgcm-checkpoint68i/pkg/exch2/Makefile MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_BUFFER.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_PARAMS.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_SIZE.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_TOPOLOGY.h MITgcm-checkpoint68i/pkg/exch2/W2_OPTIONS.h MITgcm-checkpoint68i/pkg/exch2/exch2.flow MITgcm-checkpoint68i/pkg/exch2/exch2_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_diff.list MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_check_depths.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_scal_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_uv_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_s3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_sm_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_agrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_cgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_z_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/w2_cumulsum_z_tile.F MITgcm-checkpoint68i/pkg/exch2/w2_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_eeboot.F MITgcm-checkpoint68i/pkg/exch2/w2_map_procs.F MITgcm-checkpoint68i/pkg/exch2/w2_print_comm_sequence.F MITgcm-checkpoint68i/pkg/exch2/w2_print_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_readparms.F MITgcm-checkpoint68i/pkg/exch2/w2_set_cs6_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_f2f_index.F MITgcm-checkpoint68i/pkg/exch2/w2_set_gen_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_cumsum.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_tiles.F MITgcm-checkpoint68i/pkg/exch2/w2_set_myown_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_single_facet.F MITgcm-checkpoint68i/pkg/exch2/w2_set_tile2tiles.F MITgcm-checkpoint68i/pkg/exf/ MITgcm-checkpoint68i/pkg/exf/EXF_CONSTANTS.h MITgcm-checkpoint68i/pkg/exf/EXF_FIELDS.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_PARAM.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_SIZE.h MITgcm-checkpoint68i/pkg/exf/EXF_OPTIONS.h MITgcm-checkpoint68i/pkg/exf/EXF_PARAM.h MITgcm-checkpoint68i/pkg/exf/TODO.txt MITgcm-checkpoint68i/pkg/exf/exf_ad.flow MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_diff.list MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots__g.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots_ad.F MITgcm-checkpoint68i/pkg/exf/exf_bulkformulae.F MITgcm-checkpoint68i/pkg/exf/exf_check.F MITgcm-checkpoint68i/pkg/exf/exf_check_range.F MITgcm-checkpoint68i/pkg/exf/exf_description.tex MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_fill.F MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_init.F MITgcm-checkpoint68i/pkg/exf/exf_filter_rl.F MITgcm-checkpoint68i/pkg/exf/exf_getclim.F MITgcm-checkpoint68i/pkg/exf/exf_getffield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getffieldrec.F MITgcm-checkpoint68i/pkg/exf/exf_getffields.F MITgcm-checkpoint68i/pkg/exf/exf_getfield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getforcing.F MITgcm-checkpoint68i/pkg/exf/exf_getmonthsrec.F MITgcm-checkpoint68i/pkg/exf/exf_getsurfacefluxes.F MITgcm-checkpoint68i/pkg/exf/exf_getyearlyfieldname.F MITgcm-checkpoint68i/pkg/exf/exf_init_fixed.F MITgcm-checkpoint68i/pkg/exf/exf_init_fld.F MITgcm-checkpoint68i/pkg/exf/exf_init_interp.F MITgcm-checkpoint68i/pkg/exf/exf_init_varia.F MITgcm-checkpoint68i/pkg/exf/exf_interp.F MITgcm-checkpoint68i/pkg/exf/exf_interp_read.F MITgcm-checkpoint68i/pkg/exf/exf_interp_uv.F MITgcm-checkpoint68i/pkg/exf/exf_interpolate.F MITgcm-checkpoint68i/pkg/exf/exf_mapfields.F MITgcm-checkpoint68i/pkg/exf/exf_monitor.F MITgcm-checkpoint68i/pkg/exf/exf_monitor_ad.F MITgcm-checkpoint68i/pkg/exf/exf_radiation.F MITgcm-checkpoint68i/pkg/exf/exf_readparms.F MITgcm-checkpoint68i/pkg/exf/exf_set_fld.F MITgcm-checkpoint68i/pkg/exf/exf_set_gen.F MITgcm-checkpoint68i/pkg/exf/exf_set_obcs.F MITgcm-checkpoint68i/pkg/exf/exf_set_uv.F MITgcm-checkpoint68i/pkg/exf/exf_summary.F MITgcm-checkpoint68i/pkg/exf/exf_swapffields.F MITgcm-checkpoint68i/pkg/exf/exf_weight_sfx_diags.F MITgcm-checkpoint68i/pkg/exf/exf_wind.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle_table.F MITgcm-checkpoint68i/pkg/fizhi/ MITgcm-checkpoint68i/pkg/fizhi/AtoC.F MITgcm-checkpoint68i/pkg/fizhi/CtoA.F MITgcm-checkpoint68i/pkg/fizhi/FIZHI_OPTIONS.h MITgcm-checkpoint68i/pkg/fizhi/cah-dat.h MITgcm-checkpoint68i/pkg/fizhi/cai-dat.h MITgcm-checkpoint68i/pkg/fizhi/chronos.h MITgcm-checkpoint68i/pkg/fizhi/co2-tran3.h MITgcm-checkpoint68i/pkg/fizhi/do_fizhi.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_SHP.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_alarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_chemistry_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_clockstuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagalarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagnostics_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_driver.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_earth_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_fillnegs.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_gwdrag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_chem.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_fixed.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vars.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_veg.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vegsurftiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_io_comms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_lsm.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_lwrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mnc_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_moist.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mpistuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_ocean_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_rayleigh.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_read_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readparms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readwrite_vegtiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_step_diag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_swrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_tendency_apply.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_turb.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_update_time.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_utils.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_wrapper.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_datetime.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_state.F MITgcm-checkpoint68i/pkg/fizhi/getcon.F MITgcm-checkpoint68i/pkg/fizhi/getpwhere.F MITgcm-checkpoint68i/pkg/fizhi/h2o-tran3.h MITgcm-checkpoint68i/pkg/fizhi/o3-tran3.h MITgcm-checkpoint68i/pkg/fizhi/sibber.h MITgcm-checkpoint68i/pkg/fizhi/slprs.F MITgcm-checkpoint68i/pkg/fizhi/snwmid.h MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_corr.F MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_fg.F MITgcm-checkpoint68i/pkg/fizhi/step_physics.F MITgcm-checkpoint68i/pkg/fizhi/update_chemistry_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_earth_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_ocean_exports.F MITgcm-checkpoint68i/pkg/flt/ MITgcm-checkpoint68i/pkg/flt/FLT.h MITgcm-checkpoint68i/pkg/flt/FLT_BUFF.h MITgcm-checkpoint68i/pkg/flt/FLT_OPTIONS.h MITgcm-checkpoint68i/pkg/flt/FLT_SIZE.h MITgcm-checkpoint68i/pkg/flt/README.flt MITgcm-checkpoint68i/pkg/flt/exch2_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch2_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/exch_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/flt_down.F MITgcm-checkpoint68i/pkg/flt/flt_exch2.F MITgcm-checkpoint68i/pkg/flt/flt_exchg.F MITgcm-checkpoint68i/pkg/flt/flt_init_fixed.F MITgcm-checkpoint68i/pkg/flt/flt_init_varia.F MITgcm-checkpoint68i/pkg/flt/flt_interp_linear.F MITgcm-checkpoint68i/pkg/flt/flt_main.F MITgcm-checkpoint68i/pkg/flt/flt_mapping.F MITgcm-checkpoint68i/pkg/flt/flt_readparms.F MITgcm-checkpoint68i/pkg/flt/flt_runga2.F MITgcm-checkpoint68i/pkg/flt/flt_runga4.F MITgcm-checkpoint68i/pkg/flt/flt_traj.F MITgcm-checkpoint68i/pkg/flt/flt_up.F MITgcm-checkpoint68i/pkg/flt/flt_write_pickup.F MITgcm-checkpoint68i/pkg/frazil/ MITgcm-checkpoint68i/pkg/frazil/FRAZIL.h MITgcm-checkpoint68i/pkg/frazil/FRAZIL_OPTIONS.h MITgcm-checkpoint68i/pkg/frazil/frazil_ad.flow MITgcm-checkpoint68i/pkg/frazil/frazil_ad_diff.list MITgcm-checkpoint68i/pkg/frazil/frazil_calc_rhs.F MITgcm-checkpoint68i/pkg/frazil/frazil_description.tex MITgcm-checkpoint68i/pkg/frazil/frazil_diagnostics_init.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_fixed.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_varia.F MITgcm-checkpoint68i/pkg/frazil/frazil_tendency_apply.F MITgcm-checkpoint68i/pkg/gchem/ MITgcm-checkpoint68i/pkg/gchem/GCHEM.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_FIELDS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_OPTIONS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_SIZE.h MITgcm-checkpoint68i/pkg/gchem/gchem_ad_diff.list MITgcm-checkpoint68i/pkg/gchem/gchem_add_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_calc_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_check.F MITgcm-checkpoint68i/pkg/gchem/gchem_diagnostics_init.F MITgcm-checkpoint68i/pkg/gchem/gchem_fields_load.F MITgcm-checkpoint68i/pkg/gchem/gchem_forcing_sep.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_fixed.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_vari.F MITgcm-checkpoint68i/pkg/gchem/gchem_output.F MITgcm-checkpoint68i/pkg/gchem/gchem_readparms.F MITgcm-checkpoint68i/pkg/gchem/gchem_surfmean.F MITgcm-checkpoint68i/pkg/gchem/gchem_tr_register.F MITgcm-checkpoint68i/pkg/gchem/gchem_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/ MITgcm-checkpoint68i/pkg/generic_advdiff/GAD.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_FLUX_LIMITER.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_OPTIONS.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_SOM_VARS.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_diff.list MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advection.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advscheme.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_calc_rhs.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_check.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_del2.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_init.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_state.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_exch_som.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_implicit_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_fixed.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_varia.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_plm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_read_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_advect.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_exchanges.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_fill_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_lim_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_prep_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3c4_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/generic_advdiff.tex MITgcm-checkpoint68i/pkg/generic_advdiff/salt_fill.F MITgcm-checkpoint68i/pkg/ggl90/ MITgcm-checkpoint68i/pkg/ggl90/GGL90.h MITgcm-checkpoint68i/pkg/ggl90/GGL90_OPTIONS.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_diff.list MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_diff.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_visc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_check.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_diagnostics_init.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_exchanges.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_idemix.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_fixed.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_varia.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_output.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_read_pickup.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_readparms.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/ MITgcm-checkpoint68i/pkg/gmredi/GMREDI.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_OPTIONS.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_TAVE.h MITgcm-checkpoint68i/pkg/gmredi/README_ADJOINT MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad.flow MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad_diff.list MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_bates_k.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_diff.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_eigs.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_b.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_bvp.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_qgleith.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_tensor.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_urms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_check.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_description.tex MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_fill.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_impl.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_do_exch.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_fixed.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_varia.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_mnc_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_output.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_read_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_readparms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_residual_flow.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_rtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_limit.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_psi.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_xtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_ytransport.F MITgcm-checkpoint68i/pkg/gmredi/submeso_calc_psi.F MITgcm-checkpoint68i/pkg/grdchk/ MITgcm-checkpoint68i/pkg/grdchk/GRDCHK_OPTIONS.h MITgcm-checkpoint68i/pkg/grdchk/grdchk.h MITgcm-checkpoint68i/pkg/grdchk/grdchk_check.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_description.tex MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_obcs_mask.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_position.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getadxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_init.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_loc.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_main.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_print.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_readparms.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_setxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_summary.F MITgcm-checkpoint68i/pkg/gridalt/ MITgcm-checkpoint68i/pkg/gridalt/GRIDALT_OPTIONS.h MITgcm-checkpoint68i/pkg/gridalt/dyn2phys.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_diagnostics_init.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_initialise.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_mapping.h MITgcm-checkpoint68i/pkg/gridalt/gridalt_update.F MITgcm-checkpoint68i/pkg/gridalt/make_phys_grid.F MITgcm-checkpoint68i/pkg/gridalt/phys2dyn.F MITgcm-checkpoint68i/pkg/icefront/ MITgcm-checkpoint68i/pkg/icefront/ICEFRONT.h MITgcm-checkpoint68i/pkg/icefront/ICEFRONT_OPTIONS.h MITgcm-checkpoint68i/pkg/icefront/ICFSymbol.txt MITgcm-checkpoint68i/pkg/icefront/icefront_check.F MITgcm-checkpoint68i/pkg/icefront/icefront_description.tex MITgcm-checkpoint68i/pkg/icefront/icefront_diagnostics_init.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_fixed.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_varia.F MITgcm-checkpoint68i/pkg/icefront/icefront_readparms.F MITgcm-checkpoint68i/pkg/icefront/icefront_tendency_apply.F MITgcm-checkpoint68i/pkg/icefront/icefront_thermodynamics.F MITgcm-checkpoint68i/pkg/kl10/ MITgcm-checkpoint68i/pkg/kl10/KL10.h MITgcm-checkpoint68i/pkg/kl10/KL10_DIAGS.h MITgcm-checkpoint68i/pkg/kl10/KL10_OPTIONS.h MITgcm-checkpoint68i/pkg/kl10/KL10_TAVE.h MITgcm-checkpoint68i/pkg/kl10/kl10_calc.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_diff.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_visc.F MITgcm-checkpoint68i/pkg/kl10/kl10_check.F MITgcm-checkpoint68i/pkg/kl10/kl10_diagnostics_init.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_fixed.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_varia.F MITgcm-checkpoint68i/pkg/kl10/kl10_output.F MITgcm-checkpoint68i/pkg/kl10/kl10_readparms.F MITgcm-checkpoint68i/pkg/kpp/ MITgcm-checkpoint68i/pkg/kpp/KPP.h MITgcm-checkpoint68i/pkg/kpp/KPP_OPTIONS.h MITgcm-checkpoint68i/pkg/kpp/KPP_PARAMS.h MITgcm-checkpoint68i/pkg/kpp/KPP_TAVE.h MITgcm-checkpoint68i/pkg/kpp/kpp_ad_diff.list MITgcm-checkpoint68i/pkg/kpp/kpp_calc.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_t.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_visc.F MITgcm-checkpoint68i/pkg/kpp/kpp_check.F MITgcm-checkpoint68i/pkg/kpp/kpp_description.tex MITgcm-checkpoint68i/pkg/kpp/kpp_diagnostics_init.F MITgcm-checkpoint68i/pkg/kpp/kpp_do_exch.F MITgcm-checkpoint68i/pkg/kpp/kpp_forcing_surf.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_fixed.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_varia.F MITgcm-checkpoint68i/pkg/kpp/kpp_output.F MITgcm-checkpoint68i/pkg/kpp/kpp_readparms.F MITgcm-checkpoint68i/pkg/kpp/kpp_routines.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_t.F MITgcm-checkpoint68i/pkg/land/ MITgcm-checkpoint68i/pkg/land/LAND_OPTIONS.h MITgcm-checkpoint68i/pkg/land/LAND_PARAMS.h MITgcm-checkpoint68i/pkg/land/LAND_SIZE.h MITgcm-checkpoint68i/pkg/land/LAND_TAVE.h MITgcm-checkpoint68i/pkg/land/LAND_VARS.h MITgcm-checkpoint68i/pkg/land/land_albedo.F MITgcm-checkpoint68i/pkg/land/land_check.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_init.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_state.F MITgcm-checkpoint68i/pkg/land/land_do_diags.F MITgcm-checkpoint68i/pkg/land/land_impl_temp.F MITgcm-checkpoint68i/pkg/land/land_ini_vars.F MITgcm-checkpoint68i/pkg/land/land_init_fixed.F MITgcm-checkpoint68i/pkg/land/land_mnc_init.F MITgcm-checkpoint68i/pkg/land/land_monitor.F MITgcm-checkpoint68i/pkg/land/land_output.F MITgcm-checkpoint68i/pkg/land/land_read_pickup.F MITgcm-checkpoint68i/pkg/land/land_readparms.F MITgcm-checkpoint68i/pkg/land/land_stepfwd.F MITgcm-checkpoint68i/pkg/land/land_write_pickup.F MITgcm-checkpoint68i/pkg/layers/ MITgcm-checkpoint68i/pkg/layers/LAYERS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_OPTIONS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_SIZE.h MITgcm-checkpoint68i/pkg/layers/layers_ad_diff.list MITgcm-checkpoint68i/pkg/layers/layers_calc.F MITgcm-checkpoint68i/pkg/layers/layers_check.F MITgcm-checkpoint68i/pkg/layers/layers_diagnostics_init.F MITgcm-checkpoint68i/pkg/layers/layers_fluxcalc.F MITgcm-checkpoint68i/pkg/layers/layers_init_fixed.F MITgcm-checkpoint68i/pkg/layers/layers_init_varia.F MITgcm-checkpoint68i/pkg/layers/layers_mnc_init.F MITgcm-checkpoint68i/pkg/layers/layers_output.F MITgcm-checkpoint68i/pkg/layers/layers_readparms.F MITgcm-checkpoint68i/pkg/layers/layers_save.F MITgcm-checkpoint68i/pkg/layers/layers_thermodynamics.F MITgcm-checkpoint68i/pkg/layers/layers_wsurf_tr.F MITgcm-checkpoint68i/pkg/longstep/ MITgcm-checkpoint68i/pkg/longstep/LONGSTEP.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_OPTIONS.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_PARAMS.h MITgcm-checkpoint68i/pkg/longstep/README MITgcm-checkpoint68i/pkg/longstep/longstep_average.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_check_iters.F MITgcm-checkpoint68i/pkg/longstep/longstep_correction_step.F MITgcm-checkpoint68i/pkg/longstep/longstep_diagnostics_init.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_rs.F MITgcm-checkpoint68i/pkg/longstep/longstep_forcing_surf.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_fixed.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_varia.F MITgcm-checkpoint68i/pkg/longstep/longstep_readparms.F MITgcm-checkpoint68i/pkg/longstep/longstep_reset_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_thermodynamics.F MITgcm-checkpoint68i/pkg/matrix/ MITgcm-checkpoint68i/pkg/matrix/MATRIX.h MITgcm-checkpoint68i/pkg/matrix/MATRIX_OPTIONS.h MITgcm-checkpoint68i/pkg/matrix/matrix_init_varia.F MITgcm-checkpoint68i/pkg/matrix/matrix_output.F MITgcm-checkpoint68i/pkg/matrix/matrix_readparms.F MITgcm-checkpoint68i/pkg/matrix/matrix_store_tendency.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_grid.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_tendency.F MITgcm-checkpoint68i/pkg/mdsio/ MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_3D.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_WH.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_OPTIONS.h MITgcm-checkpoint68i/pkg/mdsio/mdsio_ad.flow MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertorl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_check4file.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_facef_read.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_readvec_loc.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_segxtorx_2d.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_metafiles.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writelocal.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writevec_loc.F MITgcm-checkpoint68i/pkg/mnc/ MITgcm-checkpoint68i/pkg/mnc/CPP_OPTIONS.t MITgcm-checkpoint68i/pkg/mnc/MNC_BUFF.h MITgcm-checkpoint68i/pkg/mnc/MNC_COMMON.h MITgcm-checkpoint68i/pkg/mnc/MNC_OPTIONS.h MITgcm-checkpoint68i/pkg/mnc/MNC_PARAMS.h MITgcm-checkpoint68i/pkg/mnc/MNC_SIZE.h MITgcm-checkpoint68i/pkg/mnc/Makefile MITgcm-checkpoint68i/pkg/mnc/PACKAGES_CONFIG.t MITgcm-checkpoint68i/pkg/mnc/README.txt MITgcm-checkpoint68i/pkg/mnc/SIZE.t MITgcm-checkpoint68i/pkg/mnc/TESTING_README.txt MITgcm-checkpoint68i/pkg/mnc/build_netcdf_stubs MITgcm-checkpoint68i/pkg/mnc/mnc_ad.flow MITgcm-checkpoint68i/pkg/mnc/mnc_create_dir.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_citer.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_cvars.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_fsize.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_missingvals.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_model_attr.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_readwrite.template MITgcm-checkpoint68i/pkg/mnc/mnc_cw_udim.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_write_grid_info.F MITgcm-checkpoint68i/pkg/mnc/mnc_cwrapper.F MITgcm-checkpoint68i/pkg/mnc/mnc_description.tex MITgcm-checkpoint68i/pkg/mnc/mnc_dim.F MITgcm-checkpoint68i/pkg/mnc/mnc_dump.F MITgcm-checkpoint68i/pkg/mnc/mnc_file.F MITgcm-checkpoint68i/pkg/mnc/mnc_grid.F MITgcm-checkpoint68i/pkg/mnc/mnc_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_readparms.F MITgcm-checkpoint68i/pkg/mnc/mnc_test_001.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_002.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_utils.T MITgcm-checkpoint68i/pkg/mnc/mnc_update_time.F MITgcm-checkpoint68i/pkg/mnc/mnc_utils.F MITgcm-checkpoint68i/pkg/mnc/mnc_var.F MITgcm-checkpoint68i/pkg/mnc/parse_local_info MITgcm-checkpoint68i/pkg/mnc/pre-defined_grids.txt MITgcm-checkpoint68i/pkg/mom_common/ MITgcm-checkpoint68i/pkg/mom_common/MOM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_common/MOM_VISC.h MITgcm-checkpoint68i/pkg/mom_common/mom_calc_3d_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_absvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hdiv.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hfacz.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_ke.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_relvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_tension.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_visc.F MITgcm-checkpoint68i/pkg/mom_common/mom_common_ad_diff.list MITgcm-checkpoint68i/pkg/mom_common/mom_diagnostics_init.F MITgcm-checkpoint68i/pkg/mom_common/mom_hdissip.F MITgcm-checkpoint68i/pkg/mom_common/mom_init_fixed.F MITgcm-checkpoint68i/pkg/mom_common/mom_quasihydrostatic.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_uv_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_limit.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_stretch.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_smag_3d.F MITgcm-checkpoint68i/pkg/mom_fluxform/ MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM.h MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_fluxform/mom_calc_rtrans.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform_ad_diff.list MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_uu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_vu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_wu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_del2u.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_yviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_uv_boundary.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_uv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_vv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_wv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_del2v.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_yviscflux.F MITgcm-checkpoint68i/pkg/mom_vecinv/ MITgcm-checkpoint68i/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv_ad_diff.list MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_del2uv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_hdissip.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_vertshear.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_vertshear.F MITgcm-checkpoint68i/pkg/monitor/ MITgcm-checkpoint68i/pkg/monitor/MONITOR.h MITgcm-checkpoint68i/pkg/monitor/MONITOR_OPTIONS.h MITgcm-checkpoint68i/pkg/monitor/mon_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw2.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_description.tex MITgcm-checkpoint68i/pkg/monitor/mon_init.F MITgcm-checkpoint68i/pkg/monitor/mon_ke.F MITgcm-checkpoint68i/pkg/monitor/mon_out.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_set_iounit.F MITgcm-checkpoint68i/pkg/monitor/mon_set_pref.F MITgcm-checkpoint68i/pkg/monitor/mon_solution.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_latbnd_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_surfcor.F MITgcm-checkpoint68i/pkg/monitor/mon_vort3.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rs.F MITgcm-checkpoint68i/pkg/monitor/monitor.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.flow MITgcm-checkpoint68i/pkg/monitor/monitor_description.tex MITgcm-checkpoint68i/pkg/monitor/monitor_g.F MITgcm-checkpoint68i/pkg/my82/ MITgcm-checkpoint68i/pkg/my82/MY82.h MITgcm-checkpoint68i/pkg/my82/MY82_OPTIONS.h MITgcm-checkpoint68i/pkg/my82/my82_calc.F MITgcm-checkpoint68i/pkg/my82/my82_calc_diff.F MITgcm-checkpoint68i/pkg/my82/my82_calc_visc.F MITgcm-checkpoint68i/pkg/my82/my82_check.F MITgcm-checkpoint68i/pkg/my82/my82_diagnostics_init.F MITgcm-checkpoint68i/pkg/my82/my82_init_fixed.F MITgcm-checkpoint68i/pkg/my82/my82_init_varia.F MITgcm-checkpoint68i/pkg/my82/my82_output.F MITgcm-checkpoint68i/pkg/my82/my82_readparms.F MITgcm-checkpoint68i/pkg/my82/my82_ri_number.F MITgcm-checkpoint68i/pkg/mypackage/ MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE.h MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE_OPTIONS.h MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad.flow MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad_diff.list MITgcm-checkpoint68i/pkg/mypackage/mypackage_calc_rhs.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_check.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_description.tex MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_state.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_fixed.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_varia.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_mnc_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_read_pickup.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_readparms.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_tendency_apply.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/ MITgcm-checkpoint68i/pkg/obcs/OBCS_FIELDS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_GRID.h MITgcm-checkpoint68i/pkg/obcs/OBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PARAMS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PTRACERS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_SEAICE.h MITgcm-checkpoint68i/pkg/obcs/ORLANSKI.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad.flow MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_diff.list MITgcm-checkpoint68i/pkg/obcs/obcs_add_tides.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_eta.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ptracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_r_star.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_seaice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_surf_dr.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ts.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uv.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_w.F MITgcm-checkpoint68i/pkg/obcs/obcs_balance_flow.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc_stevens.F MITgcm-checkpoint68i/pkg/obcs/obcs_check.F MITgcm-checkpoint68i/pkg/obcs/obcs_check_depths.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_description.tex MITgcm-checkpoint68i/pkg/obcs/obcs_diag_balance.F MITgcm-checkpoint68i/pkg/obcs/obcs_exchanges.F MITgcm-checkpoint68i/pkg/obcs/obcs_exf_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_fields_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_fixed.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_variables.F MITgcm-checkpoint68i/pkg/obcs/obcs_mon_stats.F MITgcm-checkpoint68i/pkg/obcs/obcs_monitor.F MITgcm-checkpoint68i/pkg/obcs/obcs_output.F MITgcm-checkpoint68i/pkg/obcs/obcs_prescribe_read.F MITgcm-checkpoint68i/pkg/obcs/obcs_read_pickup.F MITgcm-checkpoint68i/pkg/obcs/obcs_readparms.F MITgcm-checkpoint68i/pkg/obcs/obcs_save_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_seaice_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_set_connect.F MITgcm-checkpoint68i/pkg/obcs/obcs_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_u1_adv_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/orlanski_east.F MITgcm-checkpoint68i/pkg/obcs/orlanski_init.F MITgcm-checkpoint68i/pkg/obcs/orlanski_north.F MITgcm-checkpoint68i/pkg/obcs/orlanski_south.F MITgcm-checkpoint68i/pkg/obcs/orlanski_west.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_TAVE.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCNCPL.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCN_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_apply_import.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_check_cplconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_diags.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_ocnconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_atmconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_store_my_data.F MITgcm-checkpoint68i/pkg/offline/ MITgcm-checkpoint68i/pkg/offline/OFFLINE.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_OPTIONS.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_SWITCH.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_diff.list MITgcm-checkpoint68i/pkg/offline/offline_check.F MITgcm-checkpoint68i/pkg/offline/offline_fields_load.F MITgcm-checkpoint68i/pkg/offline/offline_get_diffus.F MITgcm-checkpoint68i/pkg/offline/offline_init_varia.F MITgcm-checkpoint68i/pkg/offline/offline_readparms.F MITgcm-checkpoint68i/pkg/offline/offline_reset_parms.F MITgcm-checkpoint68i/pkg/openad/ MITgcm-checkpoint68i/pkg/openad/OPENAD_OPTIONS.h MITgcm-checkpoint68i/pkg/openad/ad_s_different_multiple.F MITgcm-checkpoint68i/pkg/openad/ad_s_ifnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_ilnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_mds_reclen.F MITgcm-checkpoint68i/pkg/openad/externalDummies.F MITgcm-checkpoint68i/pkg/openad/findAndDiff.bash MITgcm-checkpoint68i/pkg/openad/inner_do_loop.F MITgcm-checkpoint68i/pkg/openad/openad_ad_diff.list MITgcm-checkpoint68i/pkg/openad/openad_checkpointInit.F MITgcm-checkpoint68i/pkg/openad/openad_dumpAdjoint.F MITgcm-checkpoint68i/pkg/openad/seawater.F MITgcm-checkpoint68i/pkg/openad/the_model_main.F MITgcm-checkpoint68i/pkg/opps/ MITgcm-checkpoint68i/pkg/opps/OPPS.h MITgcm-checkpoint68i/pkg/opps/OPPS_OPTIONS.h MITgcm-checkpoint68i/pkg/opps/opps_calc.F MITgcm-checkpoint68i/pkg/opps/opps_check.F MITgcm-checkpoint68i/pkg/opps/opps_init.F MITgcm-checkpoint68i/pkg/opps/opps_interface.F MITgcm-checkpoint68i/pkg/opps/opps_readparms.F MITgcm-checkpoint68i/pkg/pkg_depend MITgcm-checkpoint68i/pkg/pkg_groups MITgcm-checkpoint68i/pkg/pp81/ MITgcm-checkpoint68i/pkg/pp81/PP81.h MITgcm-checkpoint68i/pkg/pp81/PP81_OPTIONS.h MITgcm-checkpoint68i/pkg/pp81/pp81_calc.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_diff.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_visc.F MITgcm-checkpoint68i/pkg/pp81/pp81_check.F MITgcm-checkpoint68i/pkg/pp81/pp81_diagnostics_init.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_fixed.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_varia.F MITgcm-checkpoint68i/pkg/pp81/pp81_output.F MITgcm-checkpoint68i/pkg/pp81/pp81_readparms.F MITgcm-checkpoint68i/pkg/pp81/pp81_ri_number.F MITgcm-checkpoint68i/pkg/profiles/ MITgcm-checkpoint68i/pkg/profiles/PROFILES_OPTIONS.h MITgcm-checkpoint68i/pkg/profiles/PROFILES_SIZE.h MITgcm-checkpoint68i/pkg/profiles/active_file_control_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.flow MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_ad.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_g.F MITgcm-checkpoint68i/pkg/profiles/cost_profiles.F MITgcm-checkpoint68i/pkg/profiles/profiles.flow MITgcm-checkpoint68i/pkg/profiles/profiles.h MITgcm-checkpoint68i/pkg/profiles/profiles_ad_diff.list MITgcm-checkpoint68i/pkg/profiles/profiles_findunit.F MITgcm-checkpoint68i/pkg/profiles/profiles_ini_io.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_fixed.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_ncfile.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_varia.F MITgcm-checkpoint68i/pkg/profiles/profiles_inloop.F MITgcm-checkpoint68i/pkg/profiles/profiles_interp.F MITgcm-checkpoint68i/pkg/profiles/profiles_readparms.F MITgcm-checkpoint68i/pkg/profiles/profiles_readvector.F MITgcm-checkpoint68i/pkg/ptracers/ MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_FIELDS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_MOD.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_OPTIONS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_PARAMS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_SIZE.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_START.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_TAVE.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad.flow MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_diff.list MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_dump.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_adcommon.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_apply_forcing.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_calc_wsurf_tr.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_convect.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_debug.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_data_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_fields_blocking_exch.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_forcing_surf.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_fixed.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_varia.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_integrate.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_mnc_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor_ad.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_output.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_read_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_readparms.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_reset.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_set_iolabel.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_switch_onoff.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_turnoff_io.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_zonal_filt_apply.F MITgcm-checkpoint68i/pkg/rbcs/ MITgcm-checkpoint68i/pkg/rbcs/RBCS_FIELDS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_PARAMS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_SIZE.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_diff.list MITgcm-checkpoint68i/pkg/rbcs/rbcs_add_tendency.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_fields_load.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_fixed.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_varia.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_readparms.F MITgcm-checkpoint68i/pkg/regrid/ MITgcm-checkpoint68i/pkg/regrid/Makefile MITgcm-checkpoint68i/pkg/regrid/REGRID.h MITgcm-checkpoint68i/pkg/regrid/REGRID_OPTIONS.h MITgcm-checkpoint68i/pkg/regrid/REGRID_SIZE.h MITgcm-checkpoint68i/pkg/regrid/regrid_check.F MITgcm-checkpoint68i/pkg/regrid/regrid_description.tex MITgcm-checkpoint68i/pkg/regrid/regrid_init_fixed.F MITgcm-checkpoint68i/pkg/regrid/regrid_init_varia.F MITgcm-checkpoint68i/pkg/regrid/regrid_mnc_init.F MITgcm-checkpoint68i/pkg/regrid/regrid_readparms.F MITgcm-checkpoint68i/pkg/regrid/regrid_scalar_out.template MITgcm-checkpoint68i/pkg/runclock/ MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK.h MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK_OPTIONS.h MITgcm-checkpoint68i/pkg/runclock/runclock_check.F MITgcm-checkpoint68i/pkg/runclock/runclock_continue.F MITgcm-checkpoint68i/pkg/runclock/runclock_gettime.F MITgcm-checkpoint68i/pkg/runclock/runclock_init.F MITgcm-checkpoint68i/pkg/runclock/runclock_readparms.F MITgcm-checkpoint68i/pkg/rw/ MITgcm-checkpoint68i/pkg/rw/RW_MFLDS.h MITgcm-checkpoint68i/pkg/rw/RW_OPTIONS.h MITgcm-checkpoint68i/pkg/rw/get_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/read_mflds.F MITgcm-checkpoint68i/pkg/rw/read_rec.F MITgcm-checkpoint68i/pkg/rw/rw_ad.flow MITgcm-checkpoint68i/pkg/rw/rw_ad_diff.list MITgcm-checkpoint68i/pkg/rw/rw_get_suffix.F MITgcm-checkpoint68i/pkg/rw/set_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/write_local_rl.F MITgcm-checkpoint68i/pkg/rw/write_local_rs.F MITgcm-checkpoint68i/pkg/rw/write_rec.F MITgcm-checkpoint68i/pkg/salt_plume/ MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME.h MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME_OPTIONS.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_diff.list MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_apply.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_calc_depth.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_check.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_description.tex MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_fill.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_do_exch.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_forcing_surf.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_frac.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_fixed.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_varia.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_mnc_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_readparms.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_s.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_t.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_volfrac.F MITgcm-checkpoint68i/pkg/sbo/ MITgcm-checkpoint68i/pkg/sbo/SBO.h MITgcm-checkpoint68i/pkg/sbo/SBO_OPTIONS.h MITgcm-checkpoint68i/pkg/sbo/sbo_calc.F MITgcm-checkpoint68i/pkg/sbo/sbo_check.F MITgcm-checkpoint68i/pkg/sbo/sbo_description.tex MITgcm-checkpoint68i/pkg/sbo/sbo_output.F MITgcm-checkpoint68i/pkg/sbo/sbo_readparms.F MITgcm-checkpoint68i/pkg/sbo/sbo_rho.F MITgcm-checkpoint68i/pkg/seaice/ MITgcm-checkpoint68i/pkg/seaice/SEAICE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_COST.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_OPTIONS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_PARAMS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_SIZE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TAVE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TRACER.h MITgcm-checkpoint68i/pkg/seaice/advect.F MITgcm-checkpoint68i/pkg/seaice/cost_ice_test.F MITgcm-checkpoint68i/pkg/seaice/diffus.F MITgcm-checkpoint68i/pkg/seaice/dynsolver.F MITgcm-checkpoint68i/pkg/seaice/lsr.F MITgcm-checkpoint68i/pkg/seaice/ostres.F MITgcm-checkpoint68i/pkg/seaice/seaice.flow MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_diff.list MITgcm-checkpoint68i/pkg/seaice/seaice_ad_dump.F MITgcm-checkpoint68i/pkg/seaice/seaice_advdiff.F MITgcm-checkpoint68i/pkg/seaice/seaice_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_bottomdrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_budget_ocean.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_ice_strength.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_lhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_residual.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_rhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_strainrates.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_stressdiv.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_viscosities.F MITgcm-checkpoint68i/pkg/seaice/seaice_check.F MITgcm-checkpoint68i/pkg/seaice/seaice_check_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_areasst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_concentration.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_driver.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_export.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_final.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sensi.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sss.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_weights.F MITgcm-checkpoint68i/pkg/seaice/seaice_ctrl_map_ini.F MITgcm-checkpoint68i/pkg/seaice/seaice_description.tex MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_state.F MITgcm-checkpoint68i/pkg/seaice/seaice_diffusion.F MITgcm-checkpoint68i/pkg/seaice/seaice_do_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_dynsolver.F MITgcm-checkpoint68i/pkg/seaice/seaice_evp.F MITgcm-checkpoint68i/pkg/seaice/seaice_fake.F MITgcm-checkpoint68i/pkg/seaice/seaice_fgmres.F MITgcm-checkpoint68i/pkg/seaice/seaice_freedrift.F MITgcm-checkpoint68i/pkg/seaice/seaice_get_dynforcing.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth_adx.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_redist.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_remap.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_sum.F MITgcm-checkpoint68i/pkg/seaice/seaice_jacvec.F MITgcm-checkpoint68i/pkg/seaice/seaice_jfnk.F MITgcm-checkpoint68i/pkg/seaice/seaice_krylov.F MITgcm-checkpoint68i/pkg/seaice/seaice_lsr.F MITgcm-checkpoint68i/pkg/seaice/seaice_map_thsice.F MITgcm-checkpoint68i/pkg/seaice/seaice_mnc_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_model.F MITgcm-checkpoint68i/pkg/seaice/seaice_mom_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor_ad.F MITgcm-checkpoint68i/pkg/seaice/seaice_obcs_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_ocean_stress.F MITgcm-checkpoint68i/pkg/seaice/seaice_oceandrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_preconditioner.F MITgcm-checkpoint68i/pkg/seaice/seaice_prepare_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_read_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_readparms.F MITgcm-checkpoint68i/pkg/seaice/seaice_reg_ridge.F MITgcm-checkpoint68i/pkg/seaice/seaice_solve4temp.F MITgcm-checkpoint68i/pkg/seaice/seaice_summary.F MITgcm-checkpoint68i/pkg/seaice/seaice_tracer_phys.F MITgcm-checkpoint68i/pkg/seaice/seaice_turnoff_io.F MITgcm-checkpoint68i/pkg/seaice/seaice_write_pickup.F MITgcm-checkpoint68i/pkg/shap_filt/ MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT.h MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_ad_diff.list MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_ts.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_uv.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_computvort.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_diagnostics_init.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_init_fixed.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_readparms.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_relvort3.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracerold.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_u.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2c.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_v.F MITgcm-checkpoint68i/pkg/shelfice/ MITgcm-checkpoint68i/pkg/shelfice/SHELFICE.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_COST.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_OPTIONS.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_TAVE.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_diff.list MITgcm-checkpoint68i/pkg/shelfice/shelfice_check.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_accumulate.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_final.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_shifwflx.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_diagnostics_drag.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing_surf.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_depths.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_fixed.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_varia.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mask_seaice.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mnc_init.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_output.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_read_pickup.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_readparms.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_c_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_calc_w.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_state.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_uv_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remeshing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_step_icemass.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_thermodynamics.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_u_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_v_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_write_pickup.F MITgcm-checkpoint68i/pkg/showflops/ MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_INIT.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_OPTIONS.h MITgcm-checkpoint68i/pkg/showflops/showflops_ad.flow MITgcm-checkpoint68i/pkg/showflops/showflops_init.F MITgcm-checkpoint68i/pkg/showflops/showflops_inloop.F MITgcm-checkpoint68i/pkg/showflops/showflops_insolve.F MITgcm-checkpoint68i/pkg/smooth/ MITgcm-checkpoint68i/pkg/smooth/SMOOTH.h MITgcm-checkpoint68i/pkg/smooth/SMOOTH_OPTIONS.h MITgcm-checkpoint68i/pkg/smooth/smooth2d.F MITgcm-checkpoint68i/pkg/smooth/smooth3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_ad_diff.list MITgcm-checkpoint68i/pkg/smooth/smooth_basic2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_check.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2dw.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_description.tex MITgcm-checkpoint68i/pkg/smooth/smooth_diff2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_diff3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_hetero2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_impldiff.F MITgcm-checkpoint68i/pkg/smooth/smooth_init2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_fixed.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_varia.F MITgcm-checkpoint68i/pkg/smooth/smooth_readparms.F MITgcm-checkpoint68i/pkg/smooth/smooth_rhs.F MITgcm-checkpoint68i/pkg/sphere/ MITgcm-checkpoint68i/pkg/sphere/exch_all_2d_rl.F MITgcm-checkpoint68i/pkg/sphere/sphere.F MITgcm-checkpoint68i/pkg/sphere/sphere.h MITgcm-checkpoint68i/pkg/sphere/sphere_ad.flow MITgcm-checkpoint68i/pkg/sphere/sphere_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/ MITgcm-checkpoint68i/pkg/streamice/STREAMICE.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_ADV.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_BDRY.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CG.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CTRL_FLUX.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_OPTIONS.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_PETSC.h MITgcm-checkpoint68i/pkg/streamice/adstreamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/adstreamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_prime_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice_prime.F MITgcm-checkpoint68i/pkg/streamice/phi_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/slope_limiter.F MITgcm-checkpoint68i/pkg/streamice/streamice.flow MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_x.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_y.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_front.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_2dtracer.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_thickness.F MITgcm-checkpoint68i/pkg/streamice/streamice_apply_flux_ctrl.F MITgcm-checkpoint68i/pkg/streamice/streamice_bstress_exponent.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_functions.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_matfree.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_wrapper.F MITgcm-checkpoint68i/pkg/streamice/streamice_check.F MITgcm-checkpoint68i/pkg/streamice/streamice_cost_surf_accum.F MITgcm-checkpoint68i/pkg/streamice/streamice_diagnostics_state.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_fd.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_ppm.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump_ad.F MITgcm-checkpoint68i/pkg/streamice/streamice_fields_load.F MITgcm-checkpoint68i/pkg/streamice/streamice_finalize_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_forced_buttress.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_fp_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_fp_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_diagnostics.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_fixed.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_varia.F MITgcm-checkpoint68i/pkg/streamice/streamice_initialise_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/streamice_petsc_numerate.F MITgcm-checkpoint68i/pkg/streamice/streamice_petscmatdestroy.F MITgcm-checkpoint68i/pkg/streamice/streamice_read_pickup.F MITgcm-checkpoint68i/pkg/streamice/streamice_readparms.F MITgcm-checkpoint68i/pkg/streamice/streamice_taub.F MITgcm-checkpoint68i/pkg/streamice/streamice_timestep.F MITgcm-checkpoint68i/pkg/streamice/streamice_tridiag_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_upd_ffrac_uncoupled.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phistage.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve_openad.F MITgcm-checkpoint68i/pkg/streamice/streamice_velmask_upd.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta_hybrid.F MITgcm-checkpoint68i/pkg/streamice/streamice_write_pickup.F MITgcm-checkpoint68i/pkg/thsice/ MITgcm-checkpoint68i/pkg/thsice/THSICE_COST.h MITgcm-checkpoint68i/pkg/thsice/THSICE_DEBUG.h MITgcm-checkpoint68i/pkg/thsice/THSICE_OPTIONS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_PARAMS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_SIZE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_TAVE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_VARS.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad.flow MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_diff.list MITgcm-checkpoint68i/pkg/thsice/thsice_advdiff.F MITgcm-checkpoint68i/pkg/thsice/thsice_advection.F MITgcm-checkpoint68i/pkg/thsice/thsice_albedo.F MITgcm-checkpoint68i/pkg/thsice/thsice_ave.F MITgcm-checkpoint68i/pkg/thsice/thsice_balance_frw.F MITgcm-checkpoint68i/pkg/thsice/thsice_calc_thickn.F MITgcm-checkpoint68i/pkg/thsice/thsice_check.F MITgcm-checkpoint68i/pkg/thsice/thsice_check_conserv.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_driver.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_final.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_init_varia.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_test.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_state.F MITgcm-checkpoint68i/pkg/thsice/thsice_diffusion.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_advect.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_exch.F MITgcm-checkpoint68i/pkg/thsice/thsice_extend.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_bulkf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_precip.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_velocity.F MITgcm-checkpoint68i/pkg/thsice/thsice_impl_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_ini_vars.F MITgcm-checkpoint68i/pkg/thsice/thsice_init_fixed.F MITgcm-checkpoint68i/pkg/thsice/thsice_main.F MITgcm-checkpoint68i/pkg/thsice/thsice_map_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_mnc_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_monitor.F MITgcm-checkpoint68i/pkg/thsice/thsice_output.F MITgcm-checkpoint68i/pkg/thsice/thsice_read_pickup.F MITgcm-checkpoint68i/pkg/thsice/thsice_readparms.F MITgcm-checkpoint68i/pkg/thsice/thsice_reshape_layers.F MITgcm-checkpoint68i/pkg/thsice/thsice_salt_plume.F MITgcm-checkpoint68i/pkg/thsice/thsice_slab_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_solve4temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_fwd.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_test_addfluid.h MITgcm-checkpoint68i/pkg/thsice/thsice_turnoff_io.F MITgcm-checkpoint68i/pkg/thsice/thsice_write_pickup.F MITgcm-checkpoint68i/pkg/timeave/ MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_OPTIONS.h MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_STATV.h MITgcm-checkpoint68i/pkg/timeave/timeave_ad_diff.list MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1k1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_dif_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumulate.F MITgcm-checkpoint68i/pkg/timeave/timeave_description.tex MITgcm-checkpoint68i/pkg/timeave/timeave_init_fixed.F MITgcm-checkpoint68i/pkg/timeave/timeave_norma_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_normalize.F MITgcm-checkpoint68i/pkg/timeave/timeave_reset.F MITgcm-checkpoint68i/pkg/timeave/timeave_statv_write.F MITgcm-checkpoint68i/pkg/timeave/timeave_statvars.F MITgcm-checkpoint68i/pkg/timeave/timeave_surf_flux.F MITgcm-checkpoint68i/pkg/zonal_filt/ MITgcm-checkpoint68i/pkg/zonal_filt/FFTPACK.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/zonal_filt/fftpack.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_ts.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_uv.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_init.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_nofill.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_postsmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_presmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_readparms.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filter.F MITgcm-checkpoint68i/tools/ MITgcm-checkpoint68i/tools/OAD_support/ MITgcm-checkpoint68i/tools/OAD_support/OAD_active.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_regular_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_rev.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_tape.F90 MITgcm-checkpoint68i/tools/OAD_support/ad_inline.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xyz.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_write_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.dummy_in_stepping.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rs.F 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MITgcm-checkpoint68i/verification/vermix/results/output.ggl90.txt MITgcm-checkpoint68i/verification/vermix/results/output.my82.txt MITgcm-checkpoint68i/verification/vermix/results/output.opps.txt MITgcm-checkpoint68i/verification/vermix/results/output.pp81.txt MITgcm-checkpoint68i/verification/vermix/results/output.txt MITgcm-checkpoint68i/verification/vermix/run/ MITgcm-checkpoint68i/verification/vermix/run/.gitignore [41;37m step #5: BuildMITgcm [0m GENMAKE : A program for GENerating MAKEfiles for the MITgcm project. For a quick list of options, use "genmake2 -h" or for more detail see the documentation, section "Building the model" (under "Getting Started") at: https://mitgcm.readthedocs.io/ === Processing options files and arguments === getting local config information: none found getting OPTFILE information: Warning: no OPTFILE specified so we'll look for possible settings === Searching for possible settings for OPTFILE === The platform appears to be: linux_amd64 The possible FORTRAN compilers found in your path are: gfortran f77 f95 mpif77 Setting OPTFILE to: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran using OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran" get Compiler-version: '8' getting AD_OPTFILE information: using AD_OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/adjoint_options/adjoint_default" check Fortran Compiler... pass (set FC_CHECK=5/5) check makedepend (local: 0, system: 1, 1) Turning on MPI cpp macros === Checking system libraries === Do we have the system() command using mpif77... yes Do we have the fdate() command using mpif77... yes Do we have the etime() command using mpif77... c,r: yes (SbR) Can we call simple C routines (here, "cloc()") using mpif77... yes Can we unlimit the stack size using mpif77... yes Can we register a signal handler using mpif77... yes Can we use stat() through C calls... yes Can we create NetCDF-enabled binaries... no skip check for LAPACK Libs Can we call FLUSH intrinsic subroutine... yes === Setting defaults === Adding MODS directories: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code Making source files in eesupp from templates Making source files in pkg/exch2 from templates Making source files in pkg/regrid from templates === Determining package settings === getting package dependency info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_depend getting package groups info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_groups checking list of packages to compile: using PKG_LIST="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/packages.conf" before group expansion packages are: gfd obcs shelfice diagnostics timeave replacing "gfd" with: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor after group expansion packages are: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor obcs shelfice diagnostics timeave applying DISABLE settings applying ENABLE settings packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave applying package dependency rules packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave Adding STANDARDDIRS='eesupp model' Searching for *OPTIONS.h files in order to warn about the presence of "#define "-type statements that are no longer allowed: found CPP_EEOPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h" found CPP_OPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h" Creating the list of files for the adjoint compiler. === Creating the Makefile === setting INCLUDES Determining the list of source and include files Writing makefile: Makefile Add the source list for AD code generation Making list of "exceptions" that need ".p" files Making list of NOOPTFILES Add rules for links Adding makedepend marker === Done === original 'Makefile' generated successfully => next steps: > make depend > make (<-- to generate executable) make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' if [ ! -L cpl_issm.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/cpl_issm.F cpl_issm.F; fi if [ ! -L do_oceanic_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/do_oceanic_phys.F do_oceanic_phys.F; fi if [ ! -L eeboot_minimal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eeboot_minimal.F eeboot_minimal.F; fi if [ ! -L eedie.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eedie.F eedie.F; fi if [ ! -L chksum_tiled.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/chksum_tiled.F chksum_tiled.F; fi if [ ! -L debug_call.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_call.F debug_call.F; fi if [ ! -L debug_cs_corner_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_cs_corner_uv.F debug_cs_corner_uv.F; fi if [ ! -L debug_enter.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_enter.F debug_enter.F; fi if [ ! -L debug_fld_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rl.F debug_fld_stats_rl.F; fi if [ ! -L debug_fld_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rs.F debug_fld_stats_rs.F; fi if [ ! -L debug_leave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_leave.F debug_leave.F; fi if [ ! -L debug_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_msg.F debug_msg.F; fi if [ ! -L debug_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rl.F debug_stats_rl.F; fi if [ ! -L debug_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rs.F debug_stats_rs.F; fi if [ ! -L fill_in_corners_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/fill_in_corners_rl.F fill_in_corners_rl.F; fi if [ ! -L write_fullarray_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rl.F write_fullarray_rl.F; fi if [ ! -L write_fullarray_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rs.F write_fullarray_rs.F; fi if [ ! -L diag_calc_psivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_calc_psivel.F diag_calc_psivel.F; fi if [ ! -L diag_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_cg2d.F diag_cg2d.F; fi if [ ! -L diagnostics_addtolist.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_addtolist.F diagnostics_addtolist.F; fi if [ ! -L diagnostics_calc_phivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_calc_phivel.F diagnostics_calc_phivel.F; fi if [ ! -L diagnostics_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_check.F diagnostics_check.F; fi if [ ! -L diagnostics_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_clear.F diagnostics_clear.F; fi if [ ! -L diagnostics_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill.F diagnostics_fill.F; fi if [ ! -L diagnostics_fill_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_field.F diagnostics_fill_field.F; fi if [ ! -L diagnostics_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_rs.F diagnostics_fill_rs.F; fi if [ ! -L diagnostics_fill_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_state.F diagnostics_fill_state.F; fi if [ ! -L diagnostics_fract_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fract_fill.F diagnostics_fract_fill.F; fi if [ ! -L diagnostics_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_ini_io.F diagnostics_ini_io.F; fi if [ ! -L diagnostics_init_early.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_early.F diagnostics_init_early.F; fi if [ ! -L diagnostics_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_fixed.F diagnostics_init_fixed.F; fi if [ ! -L diagnostics_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_varia.F diagnostics_init_varia.F; fi if [ ! -L diagnostics_interp_p2p.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_p2p.F diagnostics_interp_p2p.F; fi if [ ! -L diagnostics_interp_vert.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_vert.F diagnostics_interp_vert.F; fi if [ ! -L diagnostics_is_on.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_is_on.F diagnostics_is_on.F; fi if [ ! -L diagnostics_list_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_list_check.F diagnostics_list_check.F; fi if [ ! -L diagnostics_main_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_main_init.F diagnostics_main_init.F; fi if [ ! -L diagnostics_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_mnc_out.F diagnostics_mnc_out.F; fi if [ ! -L diagnostics_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_out.F diagnostics_out.F; fi if [ ! -L diagnostics_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_readparms.F diagnostics_readparms.F; fi if [ ! -L diagnostics_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_read_pickup.F diagnostics_read_pickup.F; fi if [ ! -L diagnostics_scale_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill.F diagnostics_scale_fill.F; fi if [ ! -L diagnostics_scale_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill_rs.F diagnostics_scale_fill_rs.F; fi if [ ! -L diagnostics_set_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_calc.F diagnostics_set_calc.F; fi if [ ! -L diagnostics_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_setdiag.F diagnostics_setdiag.F; fi if [ ! -L diagnostics_set_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_levels.F diagnostics_set_levels.F; fi if [ ! -L diagnostics_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_pointers.F diagnostics_set_pointers.F; fi if [ ! -L diagnostics_status_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_status_error.F diagnostics_status_error.F; fi if [ ! -L diagnostics_sum_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_sum_levels.F diagnostics_sum_levels.F; fi if [ ! -L diagnostics_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_summary.F diagnostics_summary.F; fi if [ ! -L diagnostics_switch_onoff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_switch_onoff.F diagnostics_switch_onoff.F; fi if [ ! -L diagnostics_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_utils.F diagnostics_utils.F; fi if [ ! -L diagnostics_write_adj.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_adj.F diagnostics_write_adj.F; fi if [ ! -L diagnostics_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write.F diagnostics_write.F; fi if [ ! -L diagnostics_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_pickup.F diagnostics_write_pickup.F; fi if [ ! -L diagstats_ascii_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ascii_out.F diagstats_ascii_out.F; fi if [ ! -L diagstats_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_calc.F diagstats_calc.F; fi if [ ! -L diagstats_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_clear.F diagstats_clear.F; fi if [ ! -L diagstats_close_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_close_io.F diagstats_close_io.F; fi if [ ! -L diagstats_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_fill.F diagstats_fill.F; fi if [ ! -L diagstats_global.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_global.F diagstats_global.F; fi if [ ! -L diagstats_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ini_io.F diagstats_ini_io.F; fi if [ ! -L diagstats_local.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_local.F diagstats_local.F; fi if [ ! -L diagstats_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_mnc_out.F diagstats_mnc_out.F; fi if [ ! -L diagstats_others_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_others_calc.F diagstats_others_calc.F; fi if [ ! -L diagstats_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_output.F diagstats_output.F; fi if [ ! -L diagstats_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_setdiag.F diagstats_setdiag.F; fi if [ ! -L diagstats_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_pointers.F diagstats_set_pointers.F; fi if [ ! -L diagstats_set_regions.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_regions.F diagstats_set_regions.F; fi if [ ! -L diag_vegtile_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_vegtile_fill.F diag_vegtile_fill.F; fi if [ ! -L gad_advection.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advection.F gad_advection.F; fi if [ ! -L gad_advscheme.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advscheme.F gad_advscheme.F; fi if [ ! -L gad_biharm_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_r.F gad_biharm_r.F; fi if [ ! -L gad_biharm_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_x.F gad_biharm_x.F; fi if [ ! -L gad_biharm_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_y.F gad_biharm_y.F; fi if [ ! -L gad_c2_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_r.F gad_c2_adv_r.F; fi if [ ! -L gad_c2_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_x.F gad_c2_adv_x.F; fi if [ ! -L gad_c2_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_y.F gad_c2_adv_y.F; fi if [ ! -L gad_c2_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_impl_r.F gad_c2_impl_r.F; fi if [ ! -L gad_c4_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_r.F gad_c4_adv_r.F; fi if [ ! -L gad_c4_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_x.F gad_c4_adv_x.F; fi if [ ! -L gad_c4_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_y.F gad_c4_adv_y.F; fi if [ ! -L gad_calc_rhs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_calc_rhs.F gad_calc_rhs.F; fi if [ ! -L gad_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_check.F gad_check.F; fi if [ ! -L gad_del2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_del2.F gad_del2.F; fi if [ ! -L gad_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_init.F gad_diagnostics_init.F; fi if [ ! -L gad_diagnostics_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_state.F gad_diagnostics_state.F; fi if [ ! -L gad_diff_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_r.F gad_diff_r.F; fi if [ ! -L gad_diff_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_x.F gad_diff_x.F; fi if [ ! -L gad_diff_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_y.F gad_diff_y.F; fi if [ ! -L gad_dst2u1_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_r.F gad_dst2u1_adv_r.F; fi if [ ! -L gad_dst2u1_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_x.F gad_dst2u1_adv_x.F; fi if [ ! -L gad_dst2u1_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_y.F gad_dst2u1_adv_y.F; fi if [ ! -L gad_dst2u1_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_impl_r.F gad_dst2u1_impl_r.F; fi if [ ! -L gad_dst3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_r.F gad_dst3_adv_r.F; fi if [ ! -L gad_dst3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_x.F gad_dst3_adv_x.F; fi if [ ! -L gad_dst3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_y.F gad_dst3_adv_y.F; fi if [ ! -L gad_dst3fl_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_r.F gad_dst3fl_adv_r.F; fi if [ ! -L gad_dst3fl_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_x.F gad_dst3fl_adv_x.F; fi if [ ! -L gad_dst3fl_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_y.F gad_dst3fl_adv_y.F; fi if [ ! -L gad_dst3fl_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_impl_r.F gad_dst3fl_impl_r.F; fi if [ ! -L gad_exch_som.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_exch_som.F gad_exch_som.F; fi if [ ! -L gad_fluxlimit_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_r.F gad_fluxlimit_adv_r.F; fi if [ ! -L gad_fluxlimit_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_x.F gad_fluxlimit_adv_x.F; fi if [ ! -L gad_fluxlimit_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_y.F gad_fluxlimit_adv_y.F; fi if [ ! -L gad_fluxlimit_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_impl_r.F gad_fluxlimit_impl_r.F; fi if [ ! -L gad_grad_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_x.F gad_grad_x.F; fi if [ ! -L gad_grad_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_y.F gad_grad_y.F; fi if [ ! -L gad_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_implicit_r.F gad_implicit_r.F; fi if [ ! -L gad_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_fixed.F gad_init_fixed.F; fi if [ ! -L gad_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_varia.F gad_init_varia.F; fi if [ ! -L gad_os7mp_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_r.F gad_os7mp_adv_r.F; fi if [ ! -L gad_os7mp_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_x.F gad_os7mp_adv_x.F; fi if [ ! -L gad_os7mp_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_y.F gad_os7mp_adv_y.F; fi if [ ! -L gad_osc_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_r.F gad_osc_hat_r.F; fi if [ ! -L gad_osc_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_x.F gad_osc_hat_x.F; fi if [ ! -L gad_osc_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_y.F gad_osc_hat_y.F; fi if [ ! -L gad_osc_mul_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_r.F gad_osc_mul_r.F; fi if [ ! -L gad_osc_mul_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_x.F gad_osc_mul_x.F; fi if [ ! -L gad_osc_mul_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_y.F gad_osc_mul_y.F; fi if [ ! -L gad_plm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_plm_fun.F gad_plm_fun.F; fi if [ ! -L gad_ppm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_r.F gad_ppm_adv_r.F; fi if [ ! -L gad_ppm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_x.F gad_ppm_adv_x.F; fi if [ ! -L gad_ppm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_y.F gad_ppm_adv_y.F; fi if [ ! -L gad_ppm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_r.F gad_ppm_flx_r.F; fi if [ ! -L gad_ppm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_x.F gad_ppm_flx_x.F; fi if [ ! -L gad_ppm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_y.F gad_ppm_flx_y.F; fi if [ ! -L gad_ppm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_fun.F gad_ppm_fun.F; fi if [ ! -L gad_ppm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_r.F gad_ppm_hat_r.F; fi if [ ! -L gad_ppm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_x.F gad_ppm_hat_x.F; fi if [ ! -L gad_ppm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_y.F gad_ppm_hat_y.F; fi if [ ! -L gad_ppm_p3e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_r.F gad_ppm_p3e_r.F; fi if [ ! -L gad_ppm_p3e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_x.F gad_ppm_p3e_x.F; fi if [ ! -L gad_ppm_p3e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_y.F gad_ppm_p3e_y.F; fi if [ ! -L gad_pqm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_r.F gad_pqm_adv_r.F; fi if [ ! -L gad_pqm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_x.F gad_pqm_adv_x.F; fi if [ ! -L gad_pqm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_y.F gad_pqm_adv_y.F; fi if [ ! -L gad_pqm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_r.F gad_pqm_flx_r.F; fi if [ ! -L gad_pqm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_x.F gad_pqm_flx_x.F; fi if [ ! -L gad_pqm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_y.F gad_pqm_flx_y.F; fi if [ ! -L gad_pqm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_fun.F gad_pqm_fun.F; fi if [ ! -L gad_pqm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_r.F gad_pqm_hat_r.F; fi if [ ! -L gad_pqm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_x.F gad_pqm_hat_x.F; fi if [ ! -L gad_pqm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_y.F gad_pqm_hat_y.F; fi if [ ! -L gad_pqm_p5e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_r.F gad_pqm_p5e_r.F; fi if [ ! -L gad_pqm_p5e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_x.F gad_pqm_p5e_x.F; fi if [ ! -L gad_pqm_p5e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_y.F gad_pqm_p5e_y.F; fi if [ ! -L gad_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_read_pickup.F gad_read_pickup.F; fi if [ ! -L gad_som_advect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_advect.F gad_som_advect.F; fi if [ ! -L gad_som_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_r.F gad_som_adv_r.F; fi if [ ! -L gad_som_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_x.F gad_som_adv_x.F; fi if [ ! -L gad_som_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_y.F gad_som_adv_y.F; fi if [ ! -L gad_som_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_exchanges.F gad_som_exchanges.F; fi if [ ! -L gad_som_fill_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_fill_cs_corner.F gad_som_fill_cs_corner.F; fi if [ ! -L gad_som_lim_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_lim_r.F gad_som_lim_r.F; fi if [ ! -L gad_som_prep_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_prep_cs_corner.F gad_som_prep_cs_corner.F; fi if [ ! -L gad_u3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_r.F gad_u3_adv_r.F; fi if [ ! -L gad_u3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_x.F gad_u3_adv_x.F; fi if [ ! -L gad_u3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_y.F gad_u3_adv_y.F; fi if [ ! -L gad_u3c4_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3c4_impl_r.F gad_u3c4_impl_r.F; fi if [ ! -L gad_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_write_pickup.F gad_write_pickup.F; fi if [ ! -L salt_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/salt_fill.F salt_fill.F; fi if [ ! -L mdsio_buffertorl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertorl.F mdsio_buffertorl.F; fi if [ ! -L mdsio_buffertors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertors.F mdsio_buffertors.F; fi if [ ! -L mdsio_check4file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_check4file.F mdsio_check4file.F; fi if [ ! -L mdsio_facef_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_facef_read.F mdsio_facef_read.F; fi if [ ! -L mdsio_gl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl.F mdsio_gl.F; fi if [ ! -L mdsio_gl_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl_slice.F mdsio_gl_slice.F; fi if [ ! -L mdsio_pass_r4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4torl.F mdsio_pass_r4torl.F; fi if [ ! -L mdsio_pass_r4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4tors.F mdsio_pass_r4tors.F; fi if [ ! -L mdsio_pass_r8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8torl.F mdsio_pass_r8torl.F; fi if [ ! -L mdsio_pass_r8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8tors.F mdsio_pass_r8tors.F; fi if [ ! -L mdsio_rd_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rl.F mdsio_rd_rec_rl.F; fi if [ ! -L mdsio_rd_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rs.F mdsio_rd_rec_rs.F; fi if [ ! -L mdsio_read_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_field.F mdsio_read_field.F; fi if [ ! -L mdsio_read_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_meta.F mdsio_read_meta.F; fi if [ ! -L mdsio_read_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_section.F mdsio_read_section.F; fi if [ ! -L mdsio_read_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_tape.F mdsio_read_tape.F; fi if [ ! -L mdsio_readvec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_readvec_loc.F mdsio_readvec_loc.F; fi if [ ! -L mdsio_read_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_whalos.F mdsio_read_whalos.F; fi if [ ! -L mdsio_rw_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_field.F mdsio_rw_field.F; fi if [ ! -L mdsio_rw_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_slice.F mdsio_rw_slice.F; fi if [ ! -L mdsio_seg4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4torl.F mdsio_seg4torl.F; fi if [ ! -L mdsio_seg4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4tors.F mdsio_seg4tors.F; fi if [ ! -L mdsio_seg8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8torl.F mdsio_seg8torl.F; fi if [ ! -L mdsio_seg8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8tors.F mdsio_seg8tors.F; fi if [ ! -L mdsio_segxtorx_2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_segxtorx_2d.F mdsio_segxtorx_2d.F; fi if [ ! -L mdsio_write_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_field.F mdsio_write_field.F; fi if [ ! -L mdsio_writelocal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writelocal.F mdsio_writelocal.F; fi if [ ! -L mdsio_write_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_meta.F mdsio_write_meta.F; fi if [ ! -L mdsio_write_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_section.F mdsio_write_section.F; fi if [ ! -L mdsio_write_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_tape.F mdsio_write_tape.F; fi if [ ! -L mdsio_writevec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writevec_loc.F mdsio_writevec_loc.F; fi if [ ! -L mdsio_write_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_whalos.F mdsio_write_whalos.F; fi if [ ! -L mdsio_wr_metafiles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_metafiles.F mdsio_wr_metafiles.F; fi if [ ! -L mdsio_wr_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rl.F mdsio_wr_rec_rl.F; fi if [ ! -L mdsio_wr_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rs.F mdsio_wr_rec_rs.F; fi if [ ! -L mom_calc_3d_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_3d_strain.F mom_calc_3d_strain.F; fi if [ ! -L mom_calc_absvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_absvort3.F mom_calc_absvort3.F; fi if [ ! -L mom_calc_hdiv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hdiv.F mom_calc_hdiv.F; fi if [ ! -L mom_calc_hfacz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hfacz.F mom_calc_hfacz.F; fi if [ ! -L mom_calc_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_ke.F mom_calc_ke.F; fi if [ ! -L mom_calc_relvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_relvort3.F mom_calc_relvort3.F; fi if [ ! -L mom_calc_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_smag_3d.F mom_calc_smag_3d.F; fi if [ ! -L mom_calc_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_strain.F mom_calc_strain.F; fi if [ ! -L mom_calc_tension.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_tension.F mom_calc_tension.F; fi if [ ! -L mom_calc_visc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_visc.F mom_calc_visc.F; fi if [ ! -L mom_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_diagnostics_init.F mom_diagnostics_init.F; fi if [ ! -L mom_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_hdissip.F mom_hdissip.F; fi if [ ! -L mom_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_init_fixed.F mom_init_fixed.F; fi if [ ! -L mom_quasihydrostatic.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_quasihydrostatic.F mom_quasihydrostatic.F; fi if [ ! -L mom_u_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_botdrag_coeff.F mom_u_botdrag_coeff.F; fi if [ ! -L mom_u_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_coriolis_nh.F mom_u_coriolis_nh.F; fi if [ ! -L mom_u_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_implicit_r.F mom_u_implicit_r.F; fi if [ ! -L mom_u_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_metric_nh.F mom_u_metric_nh.F; fi if [ ! -L mom_u_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_rviscflux.F mom_u_rviscflux.F; fi if [ ! -L mom_u_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_sidedrag.F mom_u_sidedrag.F; fi if [ ! -L mom_uv_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_uv_smag_3d.F mom_uv_smag_3d.F; fi if [ ! -L mom_v_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_botdrag_coeff.F mom_v_botdrag_coeff.F; fi if [ ! -L mom_v_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_coriolis_nh.F mom_v_coriolis_nh.F; fi if [ ! -L mom_v_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_implicit_r.F mom_v_implicit_r.F; fi if [ ! -L mom_visc_qgl_limit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_limit.F mom_visc_qgl_limit.F; fi if [ ! -L mom_visc_qgl_stretch.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_stretch.F mom_visc_qgl_stretch.F; fi if [ ! -L mom_v_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_metric_nh.F mom_v_metric_nh.F; fi if [ ! -L mom_v_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_rviscflux.F mom_v_rviscflux.F; fi if [ ! -L mom_v_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_sidedrag.F mom_v_sidedrag.F; fi if [ ! -L mom_w_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_coriolis_nh.F mom_w_coriolis_nh.F; fi if [ ! -L mom_w_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_metric_nh.F mom_w_metric_nh.F; fi if [ ! -L mom_w_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_sidedrag.F mom_w_sidedrag.F; fi if [ ! -L mom_w_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_smag_3d.F mom_w_smag_3d.F; fi if [ ! -L mom_calc_rtrans.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_calc_rtrans.F mom_calc_rtrans.F; fi if [ ! -L mom_fluxform.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_fluxform.F mom_fluxform.F; fi if [ ! -L mom_u_adv_uu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_uu.F mom_u_adv_uu.F; fi if [ ! -L mom_u_adv_vu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_vu.F mom_u_adv_vu.F; fi if [ ! -L mom_u_adv_wu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_wu.F mom_u_adv_wu.F; fi if [ ! -L mom_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_coriolis.F mom_u_coriolis.F; fi if [ ! -L mom_u_del2u.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_del2u.F mom_u_del2u.F; fi if [ ! -L mom_u_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_cylinder.F mom_u_metric_cylinder.F; fi if [ ! -L mom_u_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_sphere.F mom_u_metric_sphere.F; fi if [ ! -L mom_uv_boundary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_uv_boundary.F mom_uv_boundary.F; fi if [ ! -L mom_u_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_xviscflux.F mom_u_xviscflux.F; fi if [ ! -L mom_u_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_yviscflux.F mom_u_yviscflux.F; fi if [ ! -L mom_v_adv_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_uv.F mom_v_adv_uv.F; fi if [ ! -L mom_v_adv_vv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_vv.F mom_v_adv_vv.F; fi if [ ! -L mom_v_adv_wv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_wv.F mom_v_adv_wv.F; fi if [ ! -L mom_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_coriolis.F mom_v_coriolis.F; fi if [ ! -L mom_v_del2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_del2v.F mom_v_del2v.F; fi if [ ! -L mom_v_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_cylinder.F mom_v_metric_cylinder.F; fi if [ ! -L mom_v_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_sphere.F mom_v_metric_sphere.F; fi if [ ! -L mom_v_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_xviscflux.F mom_v_xviscflux.F; fi if [ ! -L mom_v_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_yviscflux.F mom_v_yviscflux.F; fi if [ ! -L mom_vecinv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vecinv.F mom_vecinv.F; fi if [ ! -L mom_vi_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_coriolis.F mom_vi_coriolis.F; fi if [ ! -L mom_vi_del2uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_del2uv.F mom_vi_del2uv.F; fi if [ ! -L mom_vi_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_hdissip.F mom_vi_hdissip.F; fi if [ ! -L mom_vi_u_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F mom_vi_u_coriolis_c4.F; fi if [ ! -L mom_vi_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis.F mom_vi_u_coriolis.F; fi if [ ! -L mom_vi_u_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_grad_ke.F mom_vi_u_grad_ke.F; fi if [ ! -L mom_vi_u_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_vertshear.F mom_vi_u_vertshear.F; fi if [ ! -L mom_vi_v_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F mom_vi_v_coriolis_c4.F; fi if [ ! -L mom_vi_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis.F mom_vi_v_coriolis.F; fi if [ ! -L mom_vi_v_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_grad_ke.F mom_vi_v_grad_ke.F; fi if [ ! -L mom_vi_v_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_vertshear.F mom_vi_v_vertshear.F; fi if [ ! -L mon_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcfl.F mon_advcfl.F; fi if [ ! -L mon_advcflw2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw2.F mon_advcflw2.F; fi if [ ! -L mon_advcflw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw.F mon_advcflw.F; fi if [ ! -L mon_calc_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_advcfl.F mon_calc_advcfl.F; fi if [ ! -L mon_calc_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rl.F mon_calc_stats_rl.F; fi if [ ! -L mon_calc_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rs.F mon_calc_stats_rs.F; fi if [ ! -L mon_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_init.F mon_init.F; fi if [ ! -L monitor_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_ad.F monitor_ad.F; fi if [ ! -L monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor.F monitor.F; fi if [ ! -L monitor_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_g.F monitor_g.F; fi if [ ! -L mon_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_ke.F mon_ke.F; fi if [ ! -L mon_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_out.F mon_out.F; fi if [ ! -L mon_printstats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rl.F mon_printstats_rl.F; fi if [ ! -L mon_printstats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rs.F mon_printstats_rs.F; fi if [ ! -L mon_set_iounit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_iounit.F mon_set_iounit.F; fi if [ ! -L mon_set_pref.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_pref.F mon_set_pref.F; fi if [ ! -L mon_solution.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_solution.F mon_solution.F; fi if [ ! -L mon_stats_latbnd_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_latbnd_rl.F mon_stats_latbnd_rl.F; fi if [ ! -L mon_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rl.F mon_stats_rl.F; fi if [ ! -L mon_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rs.F mon_stats_rs.F; fi if [ ! -L mon_surfcor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_surfcor.F mon_surfcor.F; fi if [ ! -L mon_vort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_vort3.F mon_vort3.F; fi if [ ! -L mon_writestats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rl.F mon_writestats_rl.F; fi if [ ! -L mon_writestats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rs.F mon_writestats_rs.F; fi if [ ! -L obcs_add_tides.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_add_tides.F obcs_add_tides.F; fi if [ ! -L obcs_adjust.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust.F obcs_adjust.F; fi if [ ! -L obcs_adjust_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust_uvice.F obcs_adjust_uvice.F; fi if [ ! -L obcs_apply_eta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_eta.F obcs_apply_eta.F; fi if [ ! -L obcs_apply_ptracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ptracer.F obcs_apply_ptracer.F; fi if [ ! -L obcs_apply_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_r_star.F obcs_apply_r_star.F; fi if [ ! -L obcs_apply_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_seaice.F obcs_apply_seaice.F; fi if [ ! -L obcs_apply_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_surf_dr.F obcs_apply_surf_dr.F; fi if [ ! -L obcs_apply_ts.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ts.F obcs_apply_ts.F; fi if [ ! -L obcs_apply_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uv.F obcs_apply_uv.F; fi if [ ! -L obcs_apply_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uvice.F obcs_apply_uvice.F; fi if [ ! -L obcs_apply_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_w.F obcs_apply_w.F; fi if [ ! -L obcs_balance_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_balance_flow.F obcs_balance_flow.F; fi if [ ! -L obcs_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc.F obcs_calc.F; fi if [ ! -L obcs_calc_stevens.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc_stevens.F obcs_calc_stevens.F; fi if [ ! -L obcs_check_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check_depths.F obcs_check_depths.F; fi if [ ! -L obcs_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check.F obcs_check.F; fi if [ ! -L obcs_copy_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_tracer.F obcs_copy_tracer.F; fi if [ ! -L obcs_copy_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_uv_n.F obcs_copy_uv_n.F; fi if [ ! -L obcs_diag_balance.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_diag_balance.F obcs_diag_balance.F; fi if [ ! -L obcs_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exchanges.F obcs_exchanges.F; fi if [ ! -L obcs_exf_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exf_load.F obcs_exf_load.F; fi if [ ! -L obcs_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_fields_load.F obcs_fields_load.F; fi if [ ! -L obcs_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_fixed.F obcs_init_fixed.F; fi if [ ! -L obcs_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_variables.F obcs_init_variables.F; fi if [ ! -L obcs_monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_monitor.F obcs_monitor.F; fi if [ ! -L obcs_mon_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_mon_stats.F obcs_mon_stats.F; fi if [ ! -L obcs_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_output.F obcs_output.F; fi if [ ! -L obcs_prescribe_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_prescribe_read.F obcs_prescribe_read.F; fi if [ ! -L obcs_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_readparms.F obcs_readparms.F; fi if [ ! -L obcs_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_read_pickup.F obcs_read_pickup.F; fi if [ ! -L obcs_save_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_save_uv_n.F obcs_save_uv_n.F; fi if [ ! -L obcs_seaice_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_seaice_sponge.F obcs_seaice_sponge.F; fi if [ ! -L obcs_set_connect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_set_connect.F obcs_set_connect.F; fi if [ ! -L obcs_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_sponge.F obcs_sponge.F; fi if [ ! -L obcs_u1_adv_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_u1_adv_tracer.F obcs_u1_adv_tracer.F; fi if [ ! -L obcs_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_write_pickup.F obcs_write_pickup.F; fi if [ ! -L orlanski_east.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_east.F orlanski_east.F; fi if [ ! -L orlanski_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_init.F orlanski_init.F; fi if [ ! -L orlanski_north.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_north.F orlanski_north.F; fi if [ ! -L orlanski_south.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_south.F orlanski_south.F; fi if [ ! -L orlanski_west.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_west.F orlanski_west.F; fi if [ ! -L get_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/get_write_global_fld.F get_write_global_fld.F; fi if [ ! -L read_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rl.F read_fld_xy_rl.F; fi if [ ! -L read_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rs.F read_fld_xy_rs.F; fi if [ ! -L read_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rl.F read_fld_xyz_rl.F; fi if [ ! -L read_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rs.F read_fld_xyz_rs.F; fi if [ ! -L read_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rl.F read_glvec_rl.F; fi if [ ! -L read_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rs.F read_glvec_rs.F; fi if [ ! -L read_mflds.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_mflds.F read_mflds.F; fi if [ ! -L read_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_rec.F read_rec.F; fi if [ ! -L rw_get_suffix.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/rw_get_suffix.F rw_get_suffix.F; fi if [ ! -L set_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/set_write_global_fld.F set_write_global_fld.F; fi if [ ! -L write_fld_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rl.F write_fld_3d_rl.F; fi if [ ! -L write_fld_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rs.F write_fld_3d_rs.F; fi if [ ! -L write_fld_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rl.F write_fld_s3d_rl.F; fi if [ ! -L write_fld_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rs.F write_fld_s3d_rs.F; fi if [ ! -L write_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rl.F write_fld_xy_rl.F; fi if [ ! -L write_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rs.F write_fld_xy_rs.F; fi if [ ! -L write_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rl.F write_fld_xyz_rl.F; fi if [ ! -L write_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rs.F write_fld_xyz_rs.F; fi if [ ! -L write_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rl.F write_glvec_rl.F; fi if [ ! -L write_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rs.F write_glvec_rs.F; fi if [ ! -L write_local_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rl.F write_local_rl.F; fi if [ ! -L write_local_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rs.F write_local_rs.F; fi if [ ! -L write_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_rec.F write_rec.F; fi if [ ! -L shelfice_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_check.F shelfice_check.F; fi if [ ! -L shelfice_cost_accumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_accumulate.F shelfice_cost_accumulate.F; fi if [ ! -L shelfice_cost_final.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_final.F shelfice_cost_final.F; fi if [ ! -L shelfice_cost_shifwflx.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_shifwflx.F shelfice_cost_shifwflx.F; fi if [ ! -L shelfice_diagnostics_drag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_diagnostics_drag.F shelfice_diagnostics_drag.F; fi if [ ! -L shelfice_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing.F shelfice_forcing.F; fi if [ ! -L shelfice_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing_surf.F shelfice_forcing_surf.F; fi if [ ! -L shelfice_init_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_depths.F shelfice_init_depths.F; fi if [ ! -L shelfice_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_fixed.F shelfice_init_fixed.F; fi if [ ! -L shelfice_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_varia.F shelfice_init_varia.F; fi if [ ! -L shelfice_mask_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mask_seaice.F shelfice_mask_seaice.F; fi if [ ! -L shelfice_mnc_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mnc_init.F shelfice_mnc_init.F; fi if [ ! -L shelfice_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_output.F shelfice_output.F; fi if [ ! -L shelfice_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_readparms.F shelfice_readparms.F; fi if [ ! -L shelfice_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_read_pickup.F shelfice_read_pickup.F; fi if [ ! -L shelfice_remesh_calc_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_calc_w.F shelfice_remesh_calc_w.F; fi if [ ! -L shelfice_remesh_c_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_c_mask.F shelfice_remesh_c_mask.F; fi if [ ! -L shelfice_remeshing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remeshing.F shelfice_remeshing.F; fi if [ ! -L shelfice_remesh_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_state.F shelfice_remesh_state.F; fi if [ ! -L shelfice_remesh_uv_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_uv_mask.F shelfice_remesh_uv_mask.F; fi if [ ! -L shelfice_step_icemass.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_step_icemass.F shelfice_step_icemass.F; fi if [ ! -L shelfice_thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_thermodynamics.F shelfice_thermodynamics.F; fi if [ ! -L shelfice_u_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_u_drag_coeff.F shelfice_u_drag_coeff.F; fi if [ ! -L shelfice_v_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_v_drag_coeff.F shelfice_v_drag_coeff.F; fi if [ ! -L shelfice_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_write_pickup.F shelfice_write_pickup.F; fi if [ ! -L timeave_cumul_1k1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1k1t.F timeave_cumul_1k1t.F; fi if [ ! -L timeave_cumul_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1t.F timeave_cumul_1t.F; fi if [ ! -L timeave_cumul_1vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1vfc.F timeave_cumul_1vfc.F; fi if [ ! -L timeave_cumul_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2v.F timeave_cumul_2v.F; fi if [ ! -L timeave_cumul_2vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2vfc.F timeave_cumul_2vfc.F; fi if [ ! -L timeave_cumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumulate.F timeave_cumulate.F; fi if [ ! -L timeave_cumul_dif_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_dif_1t.F timeave_cumul_dif_1t.F; fi if [ ! -L timeave_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_init_fixed.F timeave_init_fixed.F; fi if [ ! -L timeave_norma_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_norma_2v.F timeave_norma_2v.F; fi if [ ! -L timeave_normalize.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_normalize.F timeave_normalize.F; fi if [ ! -L timeave_reset.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_reset.F timeave_reset.F; fi if [ ! -L timeave_statvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statvars.F timeave_statvars.F; fi if [ ! -L timeave_statv_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statv_write.F timeave_statv_write.F; fi if [ ! -L timeave_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_surf_flux.F timeave_surf_flux.F; fi if [ ! -L all_proc_die.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/all_proc_die.F all_proc_die.F; fi if [ ! -L bar2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar2.F bar2.F; fi if [ ! -L bar_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar_check.F bar_check.F; fi if [ ! -L barrier.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/barrier.F barrier.F; fi if [ ! -L check_threads.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/check_threads.F check_threads.F; fi if [ ! -L comm_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/comm_stats.F comm_stats.F; fi if [ ! -L cumulsum_z_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/cumulsum_z_tile.F cumulsum_z_tile.F; fi if [ ! -L different_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/different_multiple.F different_multiple.F; fi if [ ! -L diff_phase_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/diff_phase_multiple.F diff_phase_multiple.F; fi if [ ! -L eeboot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeboot.F eeboot.F; fi if [ ! -L eedata_example.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eedata_example.F eedata_example.F; fi if [ ! -L eeintro_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeintro_msg.F eeintro_msg.F; fi if [ ! -L eeset_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeset_parms.F eeset_parms.F; fi if [ ! -L eewrite_eeenv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eewrite_eeenv.F eewrite_eeenv.F; fi if [ ! -L exch0_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r4.F exch0_r4.F; fi if [ ! -L exch0_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r8.F exch0_r8.F; fi if [ ! -L exch0_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rl.F exch0_rl.F; fi if [ ! -L exch0_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rs.F exch0_rs.F; fi if [ ! -L exch1_bg_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r4_cube.F exch1_bg_r4_cube.F; fi if [ ! -L exch1_bg_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r8_cube.F exch1_bg_r8_cube.F; fi if [ ! -L exch1_bg_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rl_cube.F exch1_bg_rl_cube.F; fi if [ ! -L exch1_bg_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rs_cube.F exch1_bg_rs_cube.F; fi if [ ! -L exch1_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4_cube.F exch1_r4_cube.F; fi if [ ! -L exch1_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4.F exch1_r4.F; fi if [ ! -L exch1_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8_cube.F exch1_r8_cube.F; fi if [ ! -L exch1_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8.F exch1_r8.F; fi if [ ! -L exch1_rl_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_ad.F exch1_rl_ad.F; fi if [ ! -L exch1_rl_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube_ad.F exch1_rl_cube_ad.F; fi if [ ! -L exch1_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube.F exch1_rl_cube.F; fi if [ ! -L exch1_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl.F exch1_rl.F; fi if [ ! -L exch1_rs_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_ad.F exch1_rs_ad.F; fi if [ ! -L exch1_rs_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube_ad.F exch1_rs_cube_ad.F; fi if [ ! -L exch1_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube.F exch1_rs_cube.F; fi if [ ! -L exch1_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs.F exch1_rs.F; fi if [ ! -L exch1_uv_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r4_cube.F exch1_uv_r4_cube.F; fi if [ ! -L exch1_uv_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r8_cube.F exch1_uv_r8_cube.F; fi if [ ! -L exch1_uv_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rl_cube.F exch1_uv_rl_cube.F; fi if [ ! -L exch1_uv_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rs_cube.F exch1_uv_rs_cube.F; fi if [ ! -L exch1_z_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r4_cube.F exch1_z_r4_cube.F; fi if [ ! -L exch1_z_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r8_cube.F exch1_z_r8_cube.F; fi if [ ! -L exch1_z_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rl_cube.F exch1_z_rl_cube.F; fi if [ ! -L exch1_z_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rs_cube.F exch1_z_rs_cube.F; fi if [ ! -L exch_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r4.F exch_3d_r4.F; fi if [ ! -L exch_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r8.F exch_3d_r8.F; fi if [ ! -L exch_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rl.F exch_3d_rl.F; fi if [ ! -L exch_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rs.F exch_3d_rs.F; fi if [ ! -L exch_cycle_ebl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_cycle_ebl.F exch_cycle_ebl.F; fi if [ ! -L exch_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_init.F exch_init.F; fi if [ ! -L exch_r4_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_x.F exch_r4_recv_get_x.F; fi if [ ! -L exch_r4_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_y.F exch_r4_recv_get_y.F; fi if [ ! -L exch_r4_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_x.F exch_r4_send_put_x.F; fi if [ ! -L exch_r4_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_y.F exch_r4_send_put_y.F; fi if [ ! -L exch_r8_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_x.F exch_r8_recv_get_x.F; fi if [ ! -L exch_r8_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_y.F exch_r8_recv_get_y.F; fi if [ ! -L exch_r8_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_x.F exch_r8_send_put_x.F; fi if [ ! -L exch_r8_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_y.F exch_r8_send_put_y.F; fi if [ ! -L exch_rl_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_x.F exch_rl_recv_get_x.F; fi if [ ! -L exch_rl_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_y.F exch_rl_recv_get_y.F; fi if [ ! -L exch_rl_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_x.F exch_rl_send_put_x.F; fi if [ ! -L exch_rl_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_y.F exch_rl_send_put_y.F; fi if [ ! -L exch_rs_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_x.F exch_rs_recv_get_x.F; fi if [ ! -L exch_rs_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_y.F exch_rs_recv_get_y.F; fi if [ ! -L exch_rs_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_x.F exch_rs_send_put_x.F; fi if [ ! -L exch_rs_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_y.F exch_rs_send_put_y.F; fi if [ ! -L exch_s3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r4.F exch_s3d_r4.F; fi if [ ! -L exch_s3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r8.F exch_s3d_r8.F; fi if [ ! -L exch_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rl.F exch_s3d_rl.F; fi if [ ! -L exch_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rs.F exch_s3d_rs.F; fi if [ ! -L exch_sm_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r4.F exch_sm_3d_r4.F; fi if [ ! -L exch_sm_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r8.F exch_sm_3d_r8.F; fi if [ ! -L exch_sm_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rl.F exch_sm_3d_rl.F; fi if [ ! -L exch_sm_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rs.F exch_sm_3d_rs.F; fi if [ ! -L exch_uv_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r4.F exch_uv_3d_r4.F; fi if [ ! -L exch_uv_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r8.F exch_uv_3d_r8.F; fi if [ ! -L exch_uv_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rl.F exch_uv_3d_rl.F; fi if [ ! -L exch_uv_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rs.F exch_uv_3d_rs.F; fi if [ ! -L exch_uv_agrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r4.F; fi if [ ! -L exch_uv_agrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_r8.F; fi if [ ! -L exch_uv_agrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rl.F; fi if [ ! -L exch_uv_agrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rs.F exch_uv_agrid_3d_rs.F; fi if [ ! -L exch_uv_bgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r4.F; fi if [ ! -L exch_uv_bgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_r8.F; fi if [ ! -L exch_uv_bgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rl.F; fi if [ ! -L exch_uv_bgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rs.F exch_uv_bgrid_3d_rs.F; fi if [ ! -L exch_uv_dgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r4.F; fi if [ ! -L exch_uv_dgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_r8.F; fi if [ ! -L exch_uv_dgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rl.F; fi if [ ! -L exch_uv_dgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rs.F exch_uv_dgrid_3d_rs.F; fi if [ ! -L exch_uv_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r4.F exch_uv_xy_r4.F; fi if [ ! -L exch_uv_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r8.F exch_uv_xy_r8.F; fi if [ ! -L exch_uv_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rl.F exch_uv_xy_rl.F; fi if [ ! -L exch_uv_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rs.F exch_uv_xy_rs.F; fi if [ ! -L exch_uv_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r4.F exch_uv_xyz_r4.F; fi if [ ! -L exch_uv_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r8.F exch_uv_xyz_r8.F; fi if [ ! -L exch_uv_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rl.F exch_uv_xyz_rl.F; fi if [ ! -L exch_uv_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rs.F exch_uv_xyz_rs.F; fi if [ ! -L exch_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r4.F exch_xy_r4.F; fi if [ ! -L exch_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r8.F exch_xy_r8.F; fi if [ ! -L exch_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rl.F exch_xy_rl.F; fi if [ ! -L exch_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rs.F exch_xy_rs.F; fi if [ ! -L exch_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r4.F exch_xyz_r4.F; fi if [ ! -L exch_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r8.F exch_xyz_r8.F; fi if [ ! -L exch_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rl.F exch_xyz_rl.F; fi if [ ! -L exch_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rs.F exch_xyz_rs.F; fi if [ ! -L exch_z_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r4.F exch_z_3d_r4.F; fi if [ ! -L exch_z_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r8.F exch_z_3d_r8.F; fi if [ ! -L exch_z_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rl.F exch_z_3d_rl.F; fi if [ ! -L exch_z_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rs.F exch_z_3d_rs.F; fi if [ ! -L fill_cs_corner_ag_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_ag_rl.F fill_cs_corner_ag_rl.F; fi if [ ! -L fill_cs_corner_tr_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_tr_rl.F fill_cs_corner_tr_rl.F; fi if [ ! -L fill_cs_corner_uv_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rl.F fill_cs_corner_uv_rl.F; fi if [ ! -L fill_cs_corner_uv_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rs.F fill_cs_corner_uv_rs.F; fi if [ ! -L fool_the_compiler.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fool_the_compiler.F fool_the_compiler.F; fi if [ ! -L gather_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r4.F gather_2d_r4.F; fi if [ ! -L gather_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r8.F gather_2d_r8.F; fi if [ ! -L gather_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r4.F gather_2d_wh_r4.F; fi if [ ! -L gather_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r8.F gather_2d_wh_r8.F; fi if [ ! -L gather_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r4.F gather_vec_r4.F; fi if [ ! -L gather_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r8.F gather_vec_r8.F; fi if [ ! -L gather_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_xz.F gather_xz.F; fi if [ ! -L gather_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_yz.F gather_yz.F; fi if [ ! -L get_periodic_interval.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/get_periodic_interval.F get_periodic_interval.F; fi if [ ! -L global_max.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_max.F global_max.F; fi if [ ! -L global_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum.F global_sum.F; fi if [ ! -L global_sum_singlecpu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_singlecpu.F global_sum_singlecpu.F; fi if [ ! -L global_sum_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_tile.F global_sum_tile.F; fi if [ ! -L global_vec_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_vec_sum.F global_vec_sum.F; fi if [ ! -L gsum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsum.F gsum.F; fi if [ ! -L ini_communication_patterns.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_communication_patterns.F ini_communication_patterns.F; fi if [ ! -L ini_procs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_procs.F ini_procs.F; fi if [ ! -L ini_threading_environment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_threading_environment.F ini_threading_environment.F; fi if [ ! -L lef_zero.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/lef_zero.F lef_zero.F; fi if [ ! -L main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/main.F main.F; fi if [ ! -L master_cpu_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_io.F master_cpu_io.F; fi if [ ! -L master_cpu_thread.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_thread.F master_cpu_thread.F; fi if [ ! -L mds_byteswapi4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapi4.F mds_byteswapi4.F; fi if [ ! -L mds_byteswapr4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr4.F mds_byteswapr4.F; fi if [ ! -L mds_byteswapr8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr8.F mds_byteswapr8.F; fi if [ ! -L mdsfindunit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mdsfindunit.F mdsfindunit.F; fi if [ ! -L mds_flush.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_flush.F mds_flush.F; fi if [ ! -L mds_reclen.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_reclen.F mds_reclen.F; fi if [ ! -L memsync.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/memsync.F memsync.F; fi if [ ! -L nml_change_syntax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_change_syntax.F nml_change_syntax.F; fi if [ ! -L nml_set_terminator.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_set_terminator.F nml_set_terminator.F; fi if [ ! -L open_copy_data_file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/open_copy_data_file.F open_copy_data_file.F; fi if [ ! -L print.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/print.F print.F; fi if [ ! -L reset_halo.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/reset_halo.F reset_halo.F; fi if [ ! -L scatter_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r4.F scatter_2d_r4.F; fi if [ ! -L scatter_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r8.F scatter_2d_r8.F; fi if [ ! -L scatter_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r4.F scatter_2d_wh_r4.F; fi if [ ! -L scatter_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r8.F scatter_2d_wh_r8.F; fi if [ ! -L scatter_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r4.F scatter_vec_r4.F; fi if [ ! -L scatter_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r8.F scatter_vec_r8.F; fi if [ ! -L scatter_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_xz.F scatter_xz.F; fi if [ ! -L scatter_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_yz.F scatter_yz.F; fi if [ ! -L stop_if_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/stop_if_error.F stop_if_error.F; fi if [ ! -L timers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timers.F timers.F; fi if [ ! -L utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/utils.F utils.F; fi if [ ! -L write_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/write_utils.F write_utils.F; fi if [ ! -L adams_bashforth2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth2.F adams_bashforth2.F; fi if [ ! -L adams_bashforth3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth3.F adams_bashforth3.F; fi if [ ! -L add_walls2masks.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/add_walls2masks.F add_walls2masks.F; fi if [ ! -L apply_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/apply_forcing.F apply_forcing.F; fi if [ ! -L calc_3d_diffusivity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_3d_diffusivity.F calc_3d_diffusivity.F; fi if [ ! -L calc_adv_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_adv_flow.F calc_adv_flow.F; fi if [ ! -L calc_div_ghat.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_div_ghat.F calc_div_ghat.F; fi if [ ! -L calc_eddy_stress.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_eddy_stress.F calc_eddy_stress.F; fi if [ ! -L calc_grad_phi_fv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_fv.F calc_grad_phi_fv.F; fi if [ ! -L calc_grad_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_hyd.F calc_grad_phi_hyd.F; fi if [ ! -L calc_grad_phi_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_surf.F calc_grad_phi_surf.F; fi if [ ! -L calc_grid_angles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grid_angles.F calc_grid_angles.F; fi if [ ! -L calc_gw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_gw.F calc_gw.F; fi if [ ! -L calc_ivdc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_ivdc.F calc_ivdc.F; fi if [ ! -L calc_oce_mxlayer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_oce_mxlayer.F calc_oce_mxlayer.F; fi if [ ! -L calc_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_phi_hyd.F calc_phi_hyd.F; fi if [ ! -L calc_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_r_star.F calc_r_star.F; fi if [ ! -L calc_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_surf_dr.F calc_surf_dr.F; fi if [ ! -L calc_viscosity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_viscosity.F calc_viscosity.F; fi if [ ! -L calc_wsurf_tr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_wsurf_tr.F calc_wsurf_tr.F; fi if [ ! -L cg2d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_ex0.F cg2d_ex0.F; fi if [ ! -L cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d.F cg2d.F; fi if [ ! -L cg2d_nsa.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_nsa.F cg2d_nsa.F; fi if [ ! -L cg2d_sr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_sr.F cg2d_sr.F; fi if [ ! -L cg3d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d_ex0.F cg3d_ex0.F; fi if [ ! -L cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d.F cg3d.F; fi if [ ! -L check_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/check_pickup.F check_pickup.F; fi if [ ! -L config_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_check.F config_check.F; fi if [ ! -L config_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_summary.F config_summary.F; fi if [ ! -L convective_adjustment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment.F convective_adjustment.F; fi if [ ! -L convective_adjustment_ini.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment_ini.F convective_adjustment_ini.F; fi if [ ! -L convectively_mixtracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convectively_mixtracer.F convectively_mixtracer.F; fi if [ ! -L convective_weights.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_weights.F convective_weights.F; fi if [ ! -L correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/correction_step.F correction_step.F; fi if [ ! -L cycle_ab_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_ab_tracer.F cycle_ab_tracer.F; fi if [ ! -L cycle_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_tracer.F cycle_tracer.F; fi if [ ! -L diags_oceanic_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_oceanic_surf_flux.F diags_oceanic_surf_flux.F; fi if [ ! -L diags_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_hyd.F diags_phi_hyd.F; fi if [ ! -L diags_phi_rlow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_rlow.F diags_phi_rlow.F; fi if [ ! -L diags_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_rho.F diags_rho.F; fi if [ ! -L diags_sound_speed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_sound_speed.F diags_sound_speed.F; fi if [ ! -L do_atmospheric_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_atmospheric_phys.F do_atmospheric_phys.F; fi if [ ! -L do_fields_blocking_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_fields_blocking_exchanges.F do_fields_blocking_exchanges.F; fi if [ ! -L do_stagger_fields_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_stagger_fields_exchanges.F do_stagger_fields_exchanges.F; fi if [ ! -L do_statevars_diags.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_diags.F do_statevars_diags.F; fi if [ ! -L do_statevars_tave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_tave.F do_statevars_tave.F; fi if [ ! -L do_the_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_the_model_io.F do_the_model_io.F; fi if [ ! -L do_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_write_pickup.F do_write_pickup.F; fi if [ ! -L dynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/dynamics.F dynamics.F; fi if [ ! -L external_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_fields_load.F external_fields_load.F; fi if [ ! -L external_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing.F external_forcing.F; fi if [ ! -L external_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing_surf.F external_forcing_surf.F; fi if [ ! -L find_alpha.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_alpha.F find_alpha.F; fi if [ ! -L find_hyd_press_1d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_hyd_press_1d.F find_hyd_press_1d.F; fi if [ ! -L find_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_rho.F find_rho.F; fi if [ ! -L forcing_surf_relax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forcing_surf_relax.F forcing_surf_relax.F; fi if [ ! -L forward_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forward_step.F forward_step.F; fi if [ ! -L freesurf_rescale_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freesurf_rescale_g.F freesurf_rescale_g.F; fi if [ ! -L freeze_surface.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freeze_surface.F freeze_surface.F; fi if [ ! -L grad_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/grad_sigma.F grad_sigma.F; fi if [ ! -L gsw_teos10.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/gsw_teos10.F gsw_teos10.F; fi if [ ! -L impldiff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/impldiff.F impldiff.F; fi if [ ! -L ini_cartesian_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cartesian_grid.F ini_cartesian_grid.F; fi if [ ! -L ini_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg2d.F ini_cg2d.F; fi if [ ! -L ini_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg3d.F ini_cg3d.F; fi if [ ! -L ini_cori.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cori.F ini_cori.F; fi if [ ! -L ini_curvilinear_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_curvilinear_grid.F ini_curvilinear_grid.F; fi if [ ! -L ini_cylinder_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cylinder_grid.F ini_cylinder_grid.F; fi if [ ! -L ini_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_depths.F ini_depths.F; fi if [ ! -L ini_dynvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_dynvars.F ini_dynvars.F; fi if [ ! -L ini_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_eos.F ini_eos.F; fi if [ ! -L ini_ffields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_ffields.F ini_ffields.F; fi if [ ! -L ini_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_fields.F ini_fields.F; fi if [ ! -L ini_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_forcing.F ini_forcing.F; fi if [ ! -L ini_global_domain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_global_domain.F ini_global_domain.F; fi if [ ! -L ini_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_grid.F ini_grid.F; fi if [ ! -L ini_linear_phisurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_linear_phisurf.F ini_linear_phisurf.F; fi if [ ! -L ini_local_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_local_grid.F ini_local_grid.F; fi if [ ! -L ini_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_masks_etc.F ini_masks_etc.F; fi if [ ! -L ini_mixing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mixing.F ini_mixing.F; fi if [ ! -L ini_mnc_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mnc_vars.F ini_mnc_vars.F; fi if [ ! -L ini_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_model_io.F ini_model_io.F; fi if [ ! -L ini_nh_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_fields.F ini_nh_fields.F; fi if [ ! -L ini_nh_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_vars.F ini_nh_vars.F; fi if [ ! -L ini_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nlfs_vars.F ini_nlfs_vars.F; fi if [ ! -L ini_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_parms.F ini_parms.F; fi if [ ! -L ini_p_ground.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_p_ground.F ini_p_ground.F; fi if [ ! -L ini_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_pressure.F ini_pressure.F; fi if [ ! -L ini_psurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_psurf.F ini_psurf.F; fi if [ ! -L ini_salt.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_salt.F ini_salt.F; fi if [ ! -L ini_sigma_hfac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_sigma_hfac.F ini_sigma_hfac.F; fi if [ ! -L ini_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_spherical_polar_grid.F ini_spherical_polar_grid.F; fi if [ ! -L ini_theta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_theta.F ini_theta.F; fi if [ ! -L initialise_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_fixed.F initialise_fixed.F; fi if [ ! -L initialise_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_varia.F initialise_varia.F; fi if [ ! -L ini_vel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vel.F ini_vel.F; fi if [ ! -L ini_vertical_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vertical_grid.F ini_vertical_grid.F; fi if [ ! -L integrate_for_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integrate_for_w.F integrate_for_w.F; fi if [ ! -L integr_continuity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integr_continuity.F integr_continuity.F; fi if [ ! -L load_fields_driver.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_fields_driver.F load_fields_driver.F; fi if [ ! -L load_grid_spacing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_grid_spacing.F load_grid_spacing.F; fi if [ ! -L load_ref_files.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_ref_files.F load_ref_files.F; fi if [ ! -L main_do_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/main_do_loop.F main_do_loop.F; fi if [ ! -L momentum_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/momentum_correction_step.F momentum_correction_step.F; fi if [ ! -L packages_boot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_boot.F packages_boot.F; fi if [ ! -L packages_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_check.F packages_check.F; fi if [ ! -L packages_error_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_error_msg.F packages_error_msg.F; fi if [ ! -L packages_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_fixed.F packages_init_fixed.F; fi if [ ! -L packages_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_variables.F packages_init_variables.F; fi if [ ! -L packages_print_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_print_msg.F packages_print_msg.F; fi if [ ! -L packages_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_readparms.F packages_readparms.F; fi if [ ! -L packages_unused_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_unused_msg.F packages_unused_msg.F; fi if [ ! -L packages_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_write_pickup.F packages_write_pickup.F; fi if [ ! -L plot_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/plot_field.F plot_field.F; fi if [ ! -L port_rand.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/port_rand.F port_rand.F; fi if [ ! -L post_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/post_cg3d.F post_cg3d.F; fi if [ ! -L pre_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pre_cg3d.F pre_cg3d.F; fi if [ ! -L pressure_for_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pressure_for_eos.F pressure_for_eos.F; fi if [ ! -L read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/read_pickup.F read_pickup.F; fi if [ ! -L remove_mean.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/remove_mean.F remove_mean.F; fi if [ ! -L reset_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/reset_nlfs_vars.F reset_nlfs_vars.F; fi if [ ! -L rotate_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_spherical_polar_grid.F rotate_spherical_polar_grid.F; fi if [ ! -L rotate_uv2en.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_uv2en.F rotate_uv2en.F; fi if [ ! -L salt_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/salt_integrate.F salt_integrate.F; fi if [ ! -L seawater.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/seawater.F seawater.F; fi if [ ! -L set_defaults.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_defaults.F set_defaults.F; fi if [ ! -L set_grid_factors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_grid_factors.F set_grid_factors.F; fi if [ ! -L set_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_parms.F set_parms.F; fi if [ ! -L set_ref_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_ref_state.F set_ref_state.F; fi if [ ! -L solve_for_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_for_pressure.F solve_for_pressure.F; fi if [ ! -L solve_pentadiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_pentadiagonal.F solve_pentadiagonal.F; fi if [ ! -L solve_tridiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_tridiagonal.F solve_tridiagonal.F; fi if [ ! -L solve_uv_tridiago.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_uv_tridiago.F solve_uv_tridiago.F; fi if [ ! -L state_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/state_summary.F state_summary.F; fi if [ ! -L swfrac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/swfrac.F swfrac.F; fi if [ ! -L taueddy_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_init_varia.F taueddy_init_varia.F; fi if [ ! -L taueddy_tendency_apply.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_tendency_apply.F taueddy_tendency_apply.F; fi if [ ! -L temp_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/temp_integrate.F temp_integrate.F; fi if [ ! -L the_main_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_main_loop.F the_main_loop.F; fi if [ ! -L the_model_main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_model_main.F the_model_main.F; fi if [ ! -L thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/thermodynamics.F thermodynamics.F; fi if [ ! -L timestep.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep.F timestep.F; fi if [ ! -L timestep_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_tracer.F timestep_tracer.F; fi if [ ! -L timestep_wvel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_wvel.F timestep_wvel.F; fi if [ ! -L tracers_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_correction_step.F tracers_correction_step.F; fi if [ ! -L tracers_iigw_correction.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_iigw_correction.F tracers_iigw_correction.F; fi if [ ! -L turnoff_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/turnoff_model_io.F turnoff_model_io.F; fi if [ ! -L update_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_cg2d.F update_cg2d.F; fi if [ ! -L update_etah.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etah.F update_etah.F; fi if [ ! -L update_etaws.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etaws.F update_etaws.F; fi if [ ! -L update_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_masks_etc.F update_masks_etc.F; fi if [ ! -L update_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_r_star.F update_r_star.F; fi if [ ! -L update_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_sigma.F update_sigma.F; fi if [ ! -L update_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_surf_dr.F update_surf_dr.F; fi if [ ! -L write_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_grid.F write_grid.F; fi if [ ! -L write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_pickup.F write_pickup.F; fi if [ ! -L write_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_state.F write_state.F; fi if [ ! -L gsl_ieee_env.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsl_ieee_env.c gsl_ieee_env.c; fi if [ ! -L ptwrapper.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ptwrapper.c ptwrapper.c; fi if [ ! -L setdir.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setdir.c setdir.c; fi if [ ! -L setrlstk.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setrlstk.c setrlstk.c; fi if [ ! -L sigreg.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/sigreg.c sigreg.c; fi if [ ! -L tim.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/tim.c tim.c; fi if [ ! -L timer_stats.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timer_stats.c timer_stats.c; fi if [ ! -L CPP_EEOPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h CPP_EEOPTIONS.h; fi if [ ! -L SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/SIZE.h SIZE.h; fi if [ ! -L DEBUG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/DEBUG_OPTIONS.h DEBUG_OPTIONS.h; fi if [ ! -L DIAGNOSTICS_CALC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_CALC.h DIAGNOSTICS_CALC.h; fi if [ ! -L DIAGNOSTICS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS.h DIAGNOSTICS.h; fi if [ ! -L DIAGNOSTICS_SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_SIZE.h DIAGNOSTICS_SIZE.h; fi if [ ! -L DIAG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAG_OPTIONS.h DIAG_OPTIONS.h; fi if [ ! -L DIAGSTATS_REGIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGSTATS_REGIONS.h DIAGSTATS_REGIONS.h; fi if [ ! -L gad_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev1_dir.h gad_ad_check_lev1_dir.h; fi if [ ! -L gad_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev2_dir.h gad_ad_check_lev2_dir.h; fi if [ ! -L gad_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev3_dir.h gad_ad_check_lev3_dir.h; fi if [ ! -L gad_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev4_dir.h gad_ad_check_lev4_dir.h; fi if [ ! -L GAD_FLUX_LIMITER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_FLUX_LIMITER.h GAD_FLUX_LIMITER.h; fi if [ ! -L GAD.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD.h GAD.h; fi if [ ! -L GAD_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_OPTIONS.h GAD_OPTIONS.h; fi if [ ! -L GAD_SOM_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_SOM_VARS.h GAD_SOM_VARS.h; fi if [ ! -L MDSIO_BUFF_3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_3D.h MDSIO_BUFF_3D.h; fi if [ ! -L MDSIO_BUFF_WH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_WH.h MDSIO_BUFF_WH.h; fi if [ ! -L MDSIO_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_OPTIONS.h MDSIO_OPTIONS.h; fi if [ ! -L MOM_COMMON_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_COMMON_OPTIONS.h MOM_COMMON_OPTIONS.h; fi if [ ! -L MOM_VISC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_VISC.h MOM_VISC.h; fi if [ ! -L MOM_FLUXFORM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM.h MOM_FLUXFORM.h; fi if [ ! -L MOM_FLUXFORM_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MOM_FLUXFORM_OPTIONS.h; fi if [ ! -L MOM_VECINV_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MOM_VECINV_OPTIONS.h; fi if [ ! -L MONITOR.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR.h MONITOR.h; fi if [ ! -L MONITOR_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR_OPTIONS.h MONITOR_OPTIONS.h; fi if [ ! -L obcs_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev1_dir.h obcs_ad_check_lev1_dir.h; fi if [ ! -L obcs_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev2_dir.h obcs_ad_check_lev2_dir.h; fi if [ ! -L obcs_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev3_dir.h obcs_ad_check_lev3_dir.h; fi if [ ! -L obcs_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev4_dir.h obcs_ad_check_lev4_dir.h; fi if [ ! -L OBCS_FIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_FIELDS.h OBCS_FIELDS.h; fi if [ ! -L OBCS_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_GRID.h OBCS_GRID.h; fi if [ ! -L OBCS_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_OPTIONS.h OBCS_OPTIONS.h; fi if [ ! -L OBCS_PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PARAMS.h OBCS_PARAMS.h; fi if [ ! -L OBCS_PTRACERS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PTRACERS.h OBCS_PTRACERS.h; fi if [ ! -L OBCS_SEAICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_SEAICE.h OBCS_SEAICE.h; fi if [ ! -L ORLANSKI.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/ORLANSKI.h ORLANSKI.h; fi if [ ! -L RW_MFLDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_MFLDS.h RW_MFLDS.h; fi if [ ! -L RW_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_OPTIONS.h RW_OPTIONS.h; fi if [ ! -L shelfice_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev1_dir.h shelfice_ad_check_lev1_dir.h; fi if [ ! -L shelfice_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev2_dir.h shelfice_ad_check_lev2_dir.h; fi if [ ! -L shelfice_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev3_dir.h shelfice_ad_check_lev3_dir.h; fi if [ ! -L shelfice_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev4_dir.h shelfice_ad_check_lev4_dir.h; fi if [ ! -L SHELFICE_COST.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_COST.h SHELFICE_COST.h; fi if [ ! -L SHELFICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE.h SHELFICE.h; fi if [ ! -L SHELFICE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_OPTIONS.h SHELFICE_OPTIONS.h; fi if [ ! -L SHELFICE_TAVE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_TAVE.h SHELFICE_TAVE.h; fi if [ ! -L TIMEAVE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_OPTIONS.h TIMEAVE_OPTIONS.h; fi if [ ! -L TIMEAVE_STATV.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_STATV.h TIMEAVE_STATV.h; fi if [ ! -L cmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_c.h cmumps_c.h; fi if [ ! -L cmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_root.h cmumps_root.h; fi if [ ! -L cmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_struc.h cmumps_struc.h; fi if [ ! -L dmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_c.h dmumps_c.h; fi if [ ! -L dmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_root.h dmumps_root.h; fi if [ ! -L dmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_struc.h dmumps_struc.h; fi if [ ! -L gklib_defs.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_defs.h gklib_defs.h; fi if [ ! -L gklib_rename.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_rename.h gklib_rename.h; fi if [ ! -L gklib_tls.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_tls.h gklib_tls.h; fi if [ ! -L metis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/metis.h metis.h; fi if [ ! -L mpicxx.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpicxx.h mpicxx.h; fi if [ ! -L mpif.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpif.h mpif.h; fi if [ ! -L mpi.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi.h mpi.h; fi if [ ! -L mpiof.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpiof.h mpiof.h; fi if [ ! -L mpio.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpio.h mpio.h; fi if [ ! -L mpi_proto.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi_proto.h mpi_proto.h; fi if [ ! -L mumps_compat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_compat.h mumps_compat.h; fi if [ ! -L mumps_c_types.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_c_types.h mumps_c_types.h; fi if [ ! -L mumps_int_def.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_int_def.h mumps_int_def.h; fi if [ ! -L parmetis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/parmetis.h parmetis.h; fi if [ ! -L petscao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscao.h petscao.h; fi if [ ! -L petscbag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbag.h petscbag.h; fi if [ ! -L petscblaslapack.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack.h petscblaslapack.h; fi if [ ! -L petscblaslapack_mangle.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack_mangle.h petscblaslapack_mangle.h; fi if [ ! -L petscbt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbt.h petscbt.h; fi if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi if [ ! -L petscctable.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscctable.h petscctable.h; fi if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi if [ ! -L ricehdf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/ricehdf.h ricehdf.h; fi if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi if [ ! -L szip_adpt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/szip_adpt.h szip_adpt.h; fi if [ ! -L szlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/szlib.h szlib.h; fi if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi Creating FC_NAMEMANGLE.h ... echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h Creating BUILD_INFO.h ... echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h echo "#define THISDATE 'Thu 02 May 2024 11:04:03 AM PDT'" >> BUILD_INFO.h echo "#define THISHOST 'debian-linux-vm'" >> BUILD_INFO.h make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/8/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F Appending dependencies to Makefile /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile WARNING: f90mkdepend: no source file found for module `petscdtbinomial()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `petsccalla()`. WARNING: f90mkdepend: no source file found for module `chkmema` WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()` WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser` WARNING: f90mkdepend: no source file found for module this WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()` WARNING: f90mkdepend: no source file found for module `petsc_null_integer` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module the WARNING: f90mkdepend: no source file found for module `petscclassidregister()` WARNING: f90mkdepend: no source file found for module `petsccount_fmt` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()` rm -f makedepend.out [41;37m step #6: RunUncoupledMITgcm [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END [41;37m step #7: CreateMesh [0m Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0) saving model as: Models/IceOcean.CreateMesh [41;37m step #8: MeshGeometry [0m saving model as: Models/IceOcean.MeshGeometry [41;37m step #9: ParameterizeIce [0m saving model as: Models/IceOcean.ParameterizeIce [41;37m step #10: RunUncoupledISSM [0m checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/12 time [yr]: 0.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 2/12 time [yr]: 0.17 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 3/12 time [yr]: 0.25 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 4/12 time [yr]: 0.33 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 5/12 time [yr]: 0.42 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 6/12 time [yr]: 0.50 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 7/12 time [yr]: 0.58 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 8/12 time [yr]: 0.67 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 9/12 time [yr]: 0.75 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 10/12 time [yr]: 0.83 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 11/12 time [yr]: 0.92 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results iteration 12/12 time [yr]: 1.00 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.453481 Total Core solution elapsed time: 3.92019 Linear solver elapsed time: 2.49799 (64%) Total elapsed time: 0 hrs 0 min 4 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster saving model as: Models/IceOcean.RunUncoupledISSM [41;37m step #11: RunCoupledMITgcmISSM [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0320182 Total Core solution elapsed time: 0.505344 Linear solver elapsed time: 0.315868 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.17 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0338459 Total Core solution elapsed time: 0.24769 Linear solver elapsed time: 0.152284 (61%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.25 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0360807 Total Core solution elapsed time: 0.260535 Linear solver elapsed time: 0.161524 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.33 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0309222 Total Core solution elapsed time: 0.252069 Linear solver elapsed time: 0.153558 (61%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.42 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0350569 Total Core solution elapsed time: 0.257632 Linear solver elapsed time: 0.161424 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.50 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0343568 Total Core solution elapsed time: 0.233685 Linear solver elapsed time: 0.14725 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.58 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0273514 Total Core solution elapsed time: 0.228514 Linear solver elapsed time: 0.144951 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/2 time [yr]: 0.67 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0341964 Total Core solution elapsed time: 0.235423 Linear solver elapsed time: 0.148018 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.75 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0425421 Total Core solution elapsed time: 0.218524 Linear solver elapsed time: 0.138282 (63%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 0.83 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0282027 Total Core solution elapsed time: 0.203325 Linear solver elapsed time: 0.126187 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/2 time [yr]: 0.92 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0289135 Total Core solution elapsed time: 0.192366 Linear solver elapsed time: 0.124995 (65%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 1.00 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0332541 Total Core solution elapsed time: 0.228748 Linear solver elapsed time: 0.142576 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) call computational core: iteration 1/1 time [yr]: 1.08 (time step: 0.08) computing smb computing new velocity computing basal mass balance computing mass transport call computational core computing new grounding line position updating vertices positions saving temporary results write lock file: FemModel initialization elapsed time: 0.0269138 Total Core solution elapsed time: 0.197216 Linear solver elapsed time: 0.123138 (62%) Total elapsed time: 0 hrs 0 min 0 sec WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 7 unused database options. They are: Option left: name:-ksp_type value: preonly source: code Option left: name:-mat_mumps_icntl_14 value: 120 source: code Option left: name:-mat_mumps_icntl_28 value: 2 source: code Option left: name:-mat_mumps_icntl_29 value: 2 source: code Option left: name:-mat_type value: mpiaij source: code Option left: name:-pc_factor_mat_solver_type value: mumps source: code Option left: name:-pc_type value: lu source: code loading results from cluster saving model as: Models/IceOcean.RunCoupledMITgcmISSM SUCCESS difference: 0 < 2e-13 test id: 4001 test name: IceOcean field: Base1 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: Melting1 SUCCESS difference: 1.2e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx2 SUCCESS difference: 1.6e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy2 SUCCESS difference: 1.1e-15 < 2e-07 test id: 4001 test name: IceOcean field: Thickness2 SUCCESS difference: 2.1e-16 < 2e-08 test id: 4001 test name: IceOcean field: Base2 SUCCESS difference: 3.4e-16 < 3e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset2 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate2 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: Melting2 SUCCESS difference: 1e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx3 SUCCESS difference: 1.2e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy3 SUCCESS difference: 2.1e-15 < 4e-07 test id: 4001 test name: IceOcean field: Thickness3 SUCCESS difference: 5e-16 < 3e-08 test id: 4001 test name: IceOcean field: Base3 SUCCESS difference: 3.4e-16 < 5e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset3 SUCCESS difference: 0 < 1e-13 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate3 SUCCESS difference: 0 < 6e-08 test id: 4001 test name: IceOcean field: Melting3 SUCCESS difference: 1.6e-14 < 8e-06 test id: 4001 test name: IceOcean field: Vx4 SUCCESS difference: 1.8e-14 < 7e-06 test id: 4001 test name: IceOcean field: Vy4 SUCCESS difference: 2.5e-15 < 5e-07 test id: 4001 test name: IceOcean field: Thickness4 SUCCESS difference: 5.7e-16 < 4e-08 test id: 4001 test name: IceOcean field: Base4 SUCCESS difference: 3.9e-16 < 8e-08 test id: 4001 test name: IceOcean field: MaskOceanLevelset4 SUCCESS difference: 0 < 6e-08 test id: 4001 test name: IceOcean field: FloatingiceMeltingRate4 SUCCESS difference: 0 < 3e-07 test id: 4001 test name: IceOcean field: Melting4 +++ exit code: 0 +++ error: 0 Recording test results Publishing build last changes... Last changes from revision 28251 (current) to 28250 (previous) published successfully! Finished: SUCCESS