Started by GitHub push by MathieuMorlighem Running as SYSTEM Building remotely on Debian_12-VM (debian linux) in workspace /home/jenkins/workspace/Debian_Linux-Ice-Ocean The recommended git tool is: NONE > git rev-parse --resolve-git-dir /home/jenkins/workspace/Debian_Linux-Ice-Ocean/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.39.5' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision 02c405e1b36610f52d03a2bebba1b9e8b53cabe6 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 02c405e1b36610f52d03a2bebba1b9e8b53cabe6 # timeout=10 Commit message: "BUG: added missing include vector" > git rev-list --no-walk 92d2476f44eb3a92ea6946341af580974953584d # timeout=10 [Debian_Linux-Ice-Ocean] $ /bin/bash /tmp/jenkins9642791120891698904.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== List of changed files --------------------- src/c/classes/Inputs/TransientInput.h -- checking for changed externalpackages... no -- checking for reconfiguration... no -- checking for recompilation... yes ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping m1qn3 ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Compiling ISSM ====================================================== Making with 8 CPUs make all-recursive make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' Making all in src make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' Making all in c make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXX classes/libISSMCore_la-IoModel.lo CXX classes/libISSMCore_la-FemModel.lo CXX classes/Elements/libISSMCore_la-Element.lo CXX classes/Elements/libISSMCore_la-Tria.lo CXX classes/Elements/libISSMCore_la-Penta.lo CXX modules/MmeToInputFromIdx/libISSMCore_la-MmeToInputFromIdx.lo CXX modules/MmeToInputx/libISSMCore_la-MmeToInputx.lo CXX modules/SurfaceMassBalancex/libISSMCore_la-SurfaceMassBalancex.lo CXX modules/SurfaceMassBalancex/libISSMCore_la-Gembx.lo CXX cores/libISSMCore_la-masstransport_core.lo CXX cores/libISSMCore_la-debris_core.lo CXX classes/Inputs/libISSMCore_la-Inputs.lo CXX classes/Inputs/libISSMCore_la-DatasetInput.lo CXX classes/Inputs/libISSMCore_la-ControlInput.lo CXX classes/Inputs/libISSMCore_la-TransientInput.lo CXX analyses/libISSMCore_la-DebrisAnalysis.lo CXX analyses/libISSMCore_la-HydrologyTwsAnalysis.lo CXX analyses/libISSMCore_la-HydrologyDCInefficientAnalysis.lo CXX analyses/libISSMCore_la-MasstransportAnalysis.lo CXX analyses/libISSMCore_la-MmemasstransportAnalysis.lo CXX analyses/libISSMCore_la-OceantransportAnalysis.lo CXX cores/libISSMCore_la-sealevelchange_core.lo CXX analyses/libISSMCore_la-SealevelchangeAnalysis.lo CXXLD libISSMCore.la CXXLD libISSMModules.la CXXLD issm_ocean.exe CXXLD issm.exe CXXLD issm_slc.exe CXXLD kriging.exe make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' Making all in m make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' Making all in wrappers make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' Making all in matlab make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' CXXLD libISSMMatlab.la CXXLD BamgConvertMesh_matlab.la CXXLD BamgMesher_matlab.la CXXLD BamgTriangulate_matlab.la CXXLD ContourToMesh_matlab.la CXXLD ContourToNodes_matlab.la CXXLD DistanceToMaskBoundary_matlab.la CXXLD ElementConnectivity_matlab.la CXXLD ExpSimplify_matlab.la CXXLD ExpToLevelSet_matlab.la CXXLD InterpFromGridToMesh_matlab.la CXXLD InterpFromMesh2d_matlab.la CXXLD InterpFromMeshToGrid_matlab.la CXXLD InterpFromMeshToMesh2d_matlab.la CXXLD InterpFromMeshToMesh3d_matlab.la CXXLD IssmConfig_matlab.la CXXLD MeshPartition_matlab.la CXXLD MeshProfileIntersection_matlab.la CXXLD NodeConnectivity_matlab.la CXXLD PointCloudFindNeighbors_matlab.la CXXLD ProcessRifts_matlab.la CXXLD PropagateFlagsFromConnectivity_matlab.la CXXLD Scotch_matlab.la CXXLD Triangle_matlab.la CXXLD Kriging_matlab.la make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' Making install in src make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' Making install in c make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD issm_ocean.exe CXXLD kriging.exe make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD issm_ocean.exe CXXLD kriging.exe /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libISSMCore.la libISSMOverload.la libISSMModules.la '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' libtool: install: /usr/bin/install -c .libs/libISSMCore.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMCore.so libtool: install: /usr/bin/install -c .libs/libISSMCore.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMCore.la libtool: install: /usr/bin/install -c .libs/libISSMOverload.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMOverload.so libtool: install: /usr/bin/install -c .libs/libISSMOverload.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMOverload.la libtool: warning: relinking 'libISSMModules.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -g -O2 -g -O2 -avoid-version -o libISSMModules.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ./shared/Threads/libISSMModules_la-LaunchThread.lo ./shared/Threads/libISSMModules_la-PartitionRange.lo ./shared/Exp/libISSMModules_la-exp.lo ./shared/Triangle/libISSMModules_la-AssociateSegmentToElement.lo ./shared/Triangle/libISSMModules_la-GridInsideHole.lo ./shared/Triangle/libISSMModules_la-OrderSegments.lo ./shared/Triangle/libISSMModules_la-SplitMeshForRifts.lo ./shared/Triangle/libISSMModules_la-TriangleUtils.lo ./modules/Trianglex/libISSMModules_la-Trianglex.lo ./modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo ./modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo ./modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo ./modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo ./modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo ./modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo ./modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo ./modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo ./modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo ./modules/Krigingx/libISSMModules_la-Krigingx.lo ./modules/Krigingx/libISSMModules_la-pKrigingx.lo ./libISSMCore.la -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/triangle/install/lib -ltriangle -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lflapack -lfblas ) libtool: install: /usr/bin/install -c .libs/libISSMModules.soT /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMModules.so libtool: install: /usr/bin/install -c .libs/libISSMModules.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMModules.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/aux-config:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/scripts:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c issm.exe issm_slc.exe issm_ocean.exe kriging.exe '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' libtool: install: /usr/bin/install -c .libs/issm.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm.exe libtool: install: /usr/bin/install -c .libs/issm_slc.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm_slc.exe libtool: install: /usr/bin/install -c .libs/issm_ocean.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/issm_ocean.exe libtool: install: /usr/bin/install -c .libs/kriging.exe /home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin/kriging.exe make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/c' Making install in m make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/m' Making install in wrappers make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' Making install in matlab make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libISSMMatlab.la libISSMApi_matlab.la BamgConvertMesh_matlab.la BamgMesher_matlab.la BamgTriangulate_matlab.la ContourToMesh_matlab.la ContourToNodes_matlab.la DistanceToMaskBoundary_matlab.la ElementConnectivity_matlab.la ExpSimplify_matlab.la ExpToLevelSet_matlab.la InterpFromGridToMesh_matlab.la InterpFromGrid.la InterpFromMesh2d_matlab.la InterpFromMeshToGrid_matlab.la InterpFromMeshToMesh2d_matlab.la InterpFromMeshToMesh3d_matlab.la IssmConfig_matlab.la MeshPartition_matlab.la MeshProfileIntersection_matlab.la NodeConnectivity_matlab.la PointCloudFindNeighbors_matlab.la ProcessRifts_matlab.la PropagateFlagsFromConnectivity_matlab.la Scotch_matlab.la Triangle_matlab.la Kriging_matlab.la '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib' libtool: warning: relinking 'libISSMMatlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -avoid-version -o libISSMMatlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ./io/libISSMMatlab_la-CheckNumMatlabArguments.lo ./io/libISSMMatlab_la-FetchMatlabData.lo ./io/libISSMMatlab_la-WriteMatlabData.lo ./../../c/libISSMCore.la ./../../c/libISSMModules.la -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lpetsc -ldl -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -ldmumps -lcmumps -lmumps_common -lpord -lzmumps -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lparmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lmetis -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/libISSMMatlab.soT /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMMatlab.so libtool: install: /usr/bin/install -c .libs/libISSMMatlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMMatlab.la libtool: install: /usr/bin/install -c .libs/libISSMApi_matlab.so /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMApi_matlab.so libtool: install: /usr/bin/install -c .libs/libISSMApi_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/libISSMApi_matlab.la libtool: warning: relinking 'BamgConvertMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgConvertMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgConvertMesh/BamgConvertMesh_matlab_la-BamgConvertMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgConvertMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgConvertMesh_matlab.la libtool: warning: relinking 'BamgMesher_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgMesher_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgMesher/BamgMesher_matlab_la-BamgMesher.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgMesher_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgMesher_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgMesher_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgMesher_matlab.la libtool: warning: relinking 'BamgTriangulate_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o BamgTriangulate_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../BamgTriangulate/BamgTriangulate_matlab_la-BamgTriangulate.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/BamgTriangulate_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgTriangulate_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/BamgTriangulate_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/BamgTriangulate_matlab.la libtool: warning: relinking 'ContourToMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ContourToMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ContourToMesh/ContourToMesh_matlab_la-ContourToMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ContourToMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ContourToMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToMesh_matlab.la libtool: warning: relinking 'ContourToNodes_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ContourToNodes_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ContourToNodes/ContourToNodes_matlab_la-ContourToNodes.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ContourToNodes_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToNodes_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ContourToNodes_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ContourToNodes_matlab.la libtool: warning: relinking 'DistanceToMaskBoundary_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o DistanceToMaskBoundary_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../DistanceToMaskBoundary/DistanceToMaskBoundary_matlab_la-DistanceToMaskBoundary.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/DistanceToMaskBoundary_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/DistanceToMaskBoundary_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/DistanceToMaskBoundary_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/DistanceToMaskBoundary_matlab.la libtool: warning: relinking 'ElementConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ElementConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ElementConnectivity/ElementConnectivity_matlab_la-ElementConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ElementConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ElementConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ElementConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ElementConnectivity_matlab.la libtool: warning: relinking 'ExpSimplify_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ExpSimplify_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ExpSimplify/ExpSimplify_matlab_la-ExpSimplify.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ExpSimplify_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpSimplify_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ExpSimplify_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpSimplify_matlab.la libtool: warning: relinking 'ExpToLevelSet_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ExpToLevelSet_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ExpToLevelSet/ExpToLevelSet_matlab_la-ExpToLevelSet.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpToLevelSet_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ExpToLevelSet_matlab.la libtool: warning: relinking 'InterpFromGridToMesh_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromGridToMesh_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromGridToMesh/InterpFromGridToMesh_matlab_la-InterpFromGridToMesh.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGridToMesh_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGridToMesh_matlab.la libtool: install: /usr/bin/install -c .libs/InterpFromGrid.mexa64 /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGrid.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromGrid.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromGrid.la libtool: warning: relinking 'InterpFromMesh2d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMesh2d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMesh2d/InterpFromMesh2d_matlab_la-InterpFromMesh2d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMesh2d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMesh2d_matlab.la libtool: warning: relinking 'InterpFromMeshToGrid_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToGrid_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToGrid/InterpFromMeshToGrid_matlab_la-InterpFromMeshToGrid.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToGrid_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToGrid_matlab.la libtool: warning: relinking 'InterpFromMeshToMesh2d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh2d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToMesh2d/InterpFromMeshToMesh2d_matlab_la-InterpFromMeshToMesh2d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh2d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh2d_matlab.la libtool: warning: relinking 'InterpFromMeshToMesh3d_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh3d_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../InterpFromMeshToMesh3d/InterpFromMeshToMesh3d_matlab_la-InterpFromMeshToMesh3d.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh3d_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/InterpFromMeshToMesh3d_matlab.la libtool: warning: relinking 'IssmConfig_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o IssmConfig_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../IssmConfig/IssmConfig_matlab_la-IssmConfig.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/IssmConfig_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/IssmConfig_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/IssmConfig_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/IssmConfig_matlab.la libtool: warning: relinking 'MeshPartition_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o MeshPartition_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../MeshPartition/MeshPartition_matlab_la-MeshPartition.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/MeshPartition_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshPartition_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/MeshPartition_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshPartition_matlab.la libtool: warning: relinking 'MeshProfileIntersection_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o MeshProfileIntersection_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../MeshProfileIntersection/MeshProfileIntersection_matlab_la-MeshProfileIntersection.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshProfileIntersection_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/MeshProfileIntersection_matlab.la libtool: warning: relinking 'NodeConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o NodeConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../NodeConnectivity/NodeConnectivity_matlab_la-NodeConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/NodeConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/NodeConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/NodeConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/NodeConnectivity_matlab.la libtool: warning: relinking 'PointCloudFindNeighbors_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o PointCloudFindNeighbors_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../PointCloudFindNeighbors/PointCloudFindNeighbors_matlab_la-PointCloudFindNeighbors.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/PointCloudFindNeighbors_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PointCloudFindNeighbors_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/PointCloudFindNeighbors_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PointCloudFindNeighbors_matlab.la libtool: warning: relinking 'ProcessRifts_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o ProcessRifts_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../ProcessRifts/ProcessRifts_matlab_la-ProcessRifts.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/ProcessRifts_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ProcessRifts_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/ProcessRifts_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/ProcessRifts_matlab.la libtool: warning: relinking 'PropagateFlagsFromConnectivity_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o PropagateFlagsFromConnectivity_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity_matlab_la-PropagateFlagsFromConnectivity.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/PropagateFlagsFromConnectivity_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PropagateFlagsFromConnectivity_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/PropagateFlagsFromConnectivity_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/PropagateFlagsFromConnectivity_matlab.la libtool: warning: relinking 'Scotch_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Scotch_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Scotch/Scotch_matlab_la-Scotch.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/Scotch_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Scotch_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Scotch_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Scotch_matlab.la libtool: warning: relinking 'Triangle_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Triangle_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Triangle/Triangle_matlab_la-Triangle.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat -L/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/triangle/install/lib -ltriangle ) libtool: install: /usr/bin/install -c .libs/Triangle_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Triangle_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Triangle_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Triangle_matlab.la libtool: warning: relinking 'Kriging_matlab.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab; /bin/bash "/home/jenkins/workspace/Debian_Linux-Ice-Ocean/libtool" --silent --tag CXX --mode=relink mpicxx -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -I/usr/local/MATLAB/R2023b/extern/include -fPIC -D_WRAPPERS_ -g -O2 -g -O2 -module -shrext .mexa64 -no-undefined --export-dynamic -rdynamic -avoid-version -o Kriging_matlab.la -rpath /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ../Kriging/Kriging_matlab_la-Kriging.lo ./libISSMMatlab.la ../../c/libISSMCore.la ../../c/libISSMModules.la ./libISSMApi_matlab.la -L/usr/lib/x86_64-linux-gnu -lgfortran -lmex -lstdc++ -Wl,--as-needed -Wl,-rpath-link,/usr/local/MATLAB/R2023b/bin/glnxa64 -L/usr/local/MATLAB/R2023b/bin/glnxa64 -Wl,-rpath-link,/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -L/usr/local/MATLAB/R2023b/extern/bin/glnxa64 -lMatlabDataArray -lmx -lmex -lm -lmat ) libtool: install: /usr/bin/install -c .libs/Kriging_matlab.mexa64T /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Kriging_matlab.mexa64 libtool: install: /usr/bin/install -c .libs/Kriging_matlab.lai /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib/Kriging_matlab.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/aux-config:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/scripts:/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers/matlab' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src/wrappers' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/src' make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean' +++ Removing old junit reports from: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog/results +++ Running case: MATLAB-4001 +++ working dir: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog [41;37m step #1: Parameters [0m saving data in: Models/IceOcean.Parameters [41;37m step #2: Bathymetry [0m saving data in: Models/IceOcean.Bathymetry [41;37m step #3: IceSheetGeometry [0m saving data in: Models/IceOcean.IceSheetGeometry [41;37m step #4: GetMITgcm [0m --2025-07-22 01:10:09-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz Resolving github.com (github.com)... 140.82.116.3 Connecting to github.com (github.com)|140.82.116.3|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following] --2025-07-22 01:10:09-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i Resolving codeload.github.com (codeload.github.com)... 140.82.116.9 Connecting to codeload.github.com (codeload.github.com)|140.82.116.9|:443... connected. 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MITgcm-checkpoint68i/eesupp/src/exch1_rx.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_uv_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_z_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_ad_diff.list MITgcm-checkpoint68i/eesupp/src/exch_cycle_ebl.F MITgcm-checkpoint68i/eesupp/src/exch_init.F MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_y.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_y.template MITgcm-checkpoint68i/eesupp/src/exch_s3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_sm_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_agrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_z_3d_rx.template MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_ag_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_tr_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rs.F MITgcm-checkpoint68i/eesupp/src/fool_the_compiler.F MITgcm-checkpoint68i/eesupp/src/gather_2d_rx.template MITgcm-checkpoint68i/eesupp/src/gather_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/gather_vec_rx.template MITgcm-checkpoint68i/eesupp/src/gather_xz.F MITgcm-checkpoint68i/eesupp/src/gather_yz.F MITgcm-checkpoint68i/eesupp/src/get_periodic_interval.F 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MITgcm-checkpoint68i/model/src/set_ref_state.F MITgcm-checkpoint68i/model/src/solve_for_pressure.F MITgcm-checkpoint68i/model/src/solve_pentadiagonal.F MITgcm-checkpoint68i/model/src/solve_tridiagonal.F MITgcm-checkpoint68i/model/src/solve_uv_tridiago.F MITgcm-checkpoint68i/model/src/state_summary.F MITgcm-checkpoint68i/model/src/swfrac.F MITgcm-checkpoint68i/model/src/taueddy_init_varia.F MITgcm-checkpoint68i/model/src/taueddy_tendency_apply.F MITgcm-checkpoint68i/model/src/temp_integrate.F MITgcm-checkpoint68i/model/src/the_main_loop.F MITgcm-checkpoint68i/model/src/the_model_main.F MITgcm-checkpoint68i/model/src/thermodynamics.F MITgcm-checkpoint68i/model/src/timestep.F MITgcm-checkpoint68i/model/src/timestep_tracer.F MITgcm-checkpoint68i/model/src/timestep_wvel.F MITgcm-checkpoint68i/model/src/tracers_correction_step.F MITgcm-checkpoint68i/model/src/tracers_iigw_correction.F MITgcm-checkpoint68i/model/src/turnoff_model_io.F MITgcm-checkpoint68i/model/src/update_cg2d.F MITgcm-checkpoint68i/model/src/update_etah.F MITgcm-checkpoint68i/model/src/update_etaws.F MITgcm-checkpoint68i/model/src/update_masks_etc.F MITgcm-checkpoint68i/model/src/update_r_star.F MITgcm-checkpoint68i/model/src/update_sigma.F MITgcm-checkpoint68i/model/src/update_surf_dr.F MITgcm-checkpoint68i/model/src/write_grid.F MITgcm-checkpoint68i/model/src/write_pickup.F MITgcm-checkpoint68i/model/src/write_state.F MITgcm-checkpoint68i/optim/ MITgcm-checkpoint68i/optim/Makefile MITgcm-checkpoint68i/optim/Makefile_macosx MITgcm-checkpoint68i/optim/README.md MITgcm-checkpoint68i/optim/blas1.h MITgcm-checkpoint68i/optim/data.ctrl MITgcm-checkpoint68i/optim/data.ecco MITgcm-checkpoint68i/optim/data.optim MITgcm-checkpoint68i/optim/flowchart_optim.txt MITgcm-checkpoint68i/optim/minimization.h MITgcm-checkpoint68i/optim/optim.h MITgcm-checkpoint68i/optim/optim_initmod.F MITgcm-checkpoint68i/optim/optim_main.F MITgcm-checkpoint68i/optim/optim_numbmod.F MITgcm-checkpoint68i/optim/optim_readdata.F MITgcm-checkpoint68i/optim/optim_sub.F MITgcm-checkpoint68i/optim/optim_write_control.F MITgcm-checkpoint68i/optim/optim_writedata.F MITgcm-checkpoint68i/optim/simul.F MITgcm-checkpoint68i/optim/to_do.txt MITgcm-checkpoint68i/optim/utils.F MITgcm-checkpoint68i/optim/xerbla.F MITgcm-checkpoint68i/pkg/ MITgcm-checkpoint68i/pkg/admtlm/ MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h MITgcm-checkpoint68i/pkg/aim_v23/ MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_sice_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_surf_bc.F MITgcm-checkpoint68i/pkg/aim_v23/aim_tendency_apply.F MITgcm-checkpoint68i/pkg/aim_v23/aim_v23_description.tex MITgcm-checkpoint68i/pkg/aim_v23/aim_write_local.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_phys.F MITgcm-checkpoint68i/pkg/aim_v23/aim_write_tave.F MITgcm-checkpoint68i/pkg/aim_v23/com_cnvcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcing.h MITgcm-checkpoint68i/pkg/aim_v23/com_forcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_lsccon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_physvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_radcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_radvar.h MITgcm-checkpoint68i/pkg/aim_v23/com_sflcon.h MITgcm-checkpoint68i/pkg/aim_v23/com_vdicon.h MITgcm-checkpoint68i/pkg/aim_v23/phy_const.h MITgcm-checkpoint68i/pkg/aim_v23/phy_convmf.F 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MITgcm-checkpoint68i/pkg/autodiff/adcommon.h MITgcm-checkpoint68i/pkg/autodiff/addamp_adj.F MITgcm-checkpoint68i/pkg/autodiff/addummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/addummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/addummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/adopen_adclose.F MITgcm-checkpoint68i/pkg/autodiff/adread_adwrite.F MITgcm-checkpoint68i/pkg/autodiff/adread_adwrite_i.F MITgcm-checkpoint68i/pkg/autodiff/adzero_adj.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_ad_diff.list MITgcm-checkpoint68i/pkg/autodiff/autodiff_check.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_findunit.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode.flow MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set_ad.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_set_g.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset_ad.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_inadmode_unset_g.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_ini_model_io.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_init_varia.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_readparms.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_restore.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_store.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_whtapeio_sync.F MITgcm-checkpoint68i/pkg/autodiff/autodiff_whtapeio_sync.flow MITgcm-checkpoint68i/pkg/autodiff/cg2d.flow MITgcm-checkpoint68i/pkg/autodiff/cg2d_mad.F MITgcm-checkpoint68i/pkg/autodiff/check_lev1_dir_forcing.h MITgcm-checkpoint68i/pkg/autodiff/check_lev1_dir_ocephys.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint.flow MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev1_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev1_template.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev2_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev3_directives.h MITgcm-checkpoint68i/pkg/autodiff/checkpoint_lev4_directives.h MITgcm-checkpoint68i/pkg/autodiff/common.flow MITgcm-checkpoint68i/pkg/autodiff/copy_ad_uv_outp.F MITgcm-checkpoint68i/pkg/autodiff/copy_advar_outp.F MITgcm-checkpoint68i/pkg/autodiff/damp_adj.F MITgcm-checkpoint68i/pkg/autodiff/damp_adj.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/dummy_for_etan.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/dummy_in_dynamics.flow MITgcm-checkpoint68i/pkg/autodiff/dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/dummy_in_stepping.flow MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xy.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xy_uv.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xyz.F MITgcm-checkpoint68i/pkg/autodiff/dump_adj_xyz_uv.F MITgcm-checkpoint68i/pkg/autodiff/g_common.h MITgcm-checkpoint68i/pkg/autodiff/g_dummy_for_etan.F MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_dynamics.F MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_tile_ad.F MITgcm-checkpoint68i/pkg/autodiff/initialisation.flow MITgcm-checkpoint68i/pkg/autodiff/model_ad.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.F MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction_ad.F MITgcm-checkpoint68i/pkg/autodiff/system.flow MITgcm-checkpoint68i/pkg/autodiff/tamc.h MITgcm-checkpoint68i/pkg/autodiff/zero_adj.F MITgcm-checkpoint68i/pkg/autodiff/zero_adj.flow MITgcm-checkpoint68i/pkg/bbl/ MITgcm-checkpoint68i/pkg/bbl/BBL.h MITgcm-checkpoint68i/pkg/bbl/BBL_OPTIONS.h MITgcm-checkpoint68i/pkg/bbl/bbl_ad.flow MITgcm-checkpoint68i/pkg/bbl/bbl_ad_diff.list MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rho.F MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rhs.F MITgcm-checkpoint68i/pkg/bbl/bbl_check.F MITgcm-checkpoint68i/pkg/bbl/bbl_description.tex MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_init.F MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_state.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_fixed.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_varia.F MITgcm-checkpoint68i/pkg/bbl/bbl_read_pickup.F MITgcm-checkpoint68i/pkg/bbl/bbl_readparms.F MITgcm-checkpoint68i/pkg/bbl/bbl_tendency_apply.F MITgcm-checkpoint68i/pkg/bbl/bbl_write_pickup.F MITgcm-checkpoint68i/pkg/bling/ MITgcm-checkpoint68i/pkg/bling/BLING_LOAD.h MITgcm-checkpoint68i/pkg/bling/BLING_OPTIONS.h MITgcm-checkpoint68i/pkg/bling/BLING_VARS.h MITgcm-checkpoint68i/pkg/bling/CHANGES_TO_BLING.txt MITgcm-checkpoint68i/pkg/bling/bling_ad.flow MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_diff.list MITgcm-checkpoint68i/pkg/bling/bling_airseaflux.F MITgcm-checkpoint68i/pkg/bling/bling_bio.F MITgcm-checkpoint68i/pkg/bling/bling_bio_nitrogen.F MITgcm-checkpoint68i/pkg/bling/bling_carbon_chem.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_init.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_sys.F MITgcm-checkpoint68i/pkg/bling/bling_description.txt MITgcm-checkpoint68i/pkg/bling/bling_diagnostics_init.F MITgcm-checkpoint68i/pkg/bling/bling_fields_load.F MITgcm-checkpoint68i/pkg/bling/bling_ini_forcing.F MITgcm-checkpoint68i/pkg/bling/bling_init_fixed.F MITgcm-checkpoint68i/pkg/bling/bling_init_varia.F MITgcm-checkpoint68i/pkg/bling/bling_light.F MITgcm-checkpoint68i/pkg/bling/bling_main.F MITgcm-checkpoint68i/pkg/bling/bling_min_val.F MITgcm-checkpoint68i/pkg/bling/bling_mixedlayer.F MITgcm-checkpoint68i/pkg/bling/bling_read_pickup.F MITgcm-checkpoint68i/pkg/bling/bling_readparms.F MITgcm-checkpoint68i/pkg/bling/bling_sgs.F MITgcm-checkpoint68i/pkg/bling/bling_solvesaphe.F MITgcm-checkpoint68i/pkg/bling/bling_tr_register.F MITgcm-checkpoint68i/pkg/bling/bling_write_pickup.F MITgcm-checkpoint68i/pkg/bulk_force/ MITgcm-checkpoint68i/pkg/bulk_force/BULKF.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_CONSERV.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_INT.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_PARAMS.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_TAVE.h MITgcm-checkpoint68i/pkg/bulk_force/BULK_FORCE_OPTIONS.h MITgcm-checkpoint68i/pkg/bulk_force/bulkf_ave.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_fields_load.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_flux_adjust.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_forcing.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_aim.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lanl.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lay.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_init_varia.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_output.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_readparms.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_sh2rh_aim.F MITgcm-checkpoint68i/pkg/cal/ MITgcm-checkpoint68i/pkg/cal/CAL_OPTIONS.h MITgcm-checkpoint68i/pkg/cal/cal.h MITgcm-checkpoint68i/pkg/cal/cal_ad_diff.list MITgcm-checkpoint68i/pkg/cal/cal_addtime.F MITgcm-checkpoint68i/pkg/cal/cal_checkdate.F MITgcm-checkpoint68i/pkg/cal/cal_compdates.F MITgcm-checkpoint68i/pkg/cal/cal_convdate.F MITgcm-checkpoint68i/pkg/cal/cal_copydate.F MITgcm-checkpoint68i/pkg/cal/cal_daysformonth.F MITgcm-checkpoint68i/pkg/cal/cal_dayspermonth.F MITgcm-checkpoint68i/pkg/cal/cal_description.tex MITgcm-checkpoint68i/pkg/cal/cal_fulldate.F MITgcm-checkpoint68i/pkg/cal/cal_getdate.F MITgcm-checkpoint68i/pkg/cal/cal_getmonthsrec.F MITgcm-checkpoint68i/pkg/cal/cal_init_fixed.F MITgcm-checkpoint68i/pkg/cal/cal_intdays.F MITgcm-checkpoint68i/pkg/cal/cal_intmonths.F MITgcm-checkpoint68i/pkg/cal/cal_intyears.F MITgcm-checkpoint68i/pkg/cal/cal_isleap.F MITgcm-checkpoint68i/pkg/cal/cal_monthsforyear.F MITgcm-checkpoint68i/pkg/cal/cal_monthsperyear.F MITgcm-checkpoint68i/pkg/cal/cal_numints.F MITgcm-checkpoint68i/pkg/cal/cal_printdate.F MITgcm-checkpoint68i/pkg/cal/cal_printerror.F MITgcm-checkpoint68i/pkg/cal/cal_readparms.F MITgcm-checkpoint68i/pkg/cal/cal_set.F MITgcm-checkpoint68i/pkg/cal/cal_stepsforday.F MITgcm-checkpoint68i/pkg/cal/cal_stepsperday.F MITgcm-checkpoint68i/pkg/cal/cal_subdates.F MITgcm-checkpoint68i/pkg/cal/cal_summary.F MITgcm-checkpoint68i/pkg/cal/cal_time2dump.F MITgcm-checkpoint68i/pkg/cal/cal_timeinterval.F MITgcm-checkpoint68i/pkg/cal/cal_timepassed.F MITgcm-checkpoint68i/pkg/cal/cal_timestamp.F MITgcm-checkpoint68i/pkg/cal/cal_toseconds.F MITgcm-checkpoint68i/pkg/cal/cal_weekday.F MITgcm-checkpoint68i/pkg/cd_code/ MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_OPTIONS.h MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_VARS.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad.flow MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_diff.list MITgcm-checkpoint68i/pkg/cd_code/cd_code_ini_vars.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_init_fixed.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_read_pickup.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_scheme.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_write_pickup.F MITgcm-checkpoint68i/pkg/cfc/ MITgcm-checkpoint68i/pkg/cfc/CFC.h MITgcm-checkpoint68i/pkg/cfc/CFC_ATMOS.h MITgcm-checkpoint68i/pkg/cfc/CFC_SIZE.h MITgcm-checkpoint68i/pkg/cfc/cfc11_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc11_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_diff.list MITgcm-checkpoint68i/pkg/cfc/cfc_atmos.F MITgcm-checkpoint68i/pkg/cfc/cfc_check.F MITgcm-checkpoint68i/pkg/cfc/cfc_fields_load.F MITgcm-checkpoint68i/pkg/cfc/cfc_param.F MITgcm-checkpoint68i/pkg/cfc/cfc_readparms.F MITgcm-checkpoint68i/pkg/cfc/cfc_tr_register.F MITgcm-checkpoint68i/pkg/cheapaml/ MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML.h MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML_OPTIONS.h MITgcm-checkpoint68i/pkg/cheapaml/cheapaml.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_calc_rhs.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_coare3_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_copy_edges.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_diagnostics_init.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_fields_load.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_fixed.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_varia.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_lanl_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_read_pickup.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_readparms.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_seaice.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_timestep.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_write_pickup.F MITgcm-checkpoint68i/pkg/chronos/ MITgcm-checkpoint68i/pkg/chronos/chronos.F MITgcm-checkpoint68i/pkg/chronos/chronos.h MITgcm-checkpoint68i/pkg/compon_communic/ MITgcm-checkpoint68i/pkg/compon_communic/CPLR_SIG.h MITgcm-checkpoint68i/pkg/compon_communic/comprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/generate_tag.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_all_check.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2dbl.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2int.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2real.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_dbl2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init1.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2a.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2b.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_initcomp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_int2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_match_comp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_real2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_sortranks.F MITgcm-checkpoint68i/pkg/cost/ MITgcm-checkpoint68i/pkg/cost/COST_OPTIONS.h MITgcm-checkpoint68i/pkg/cost/adcost.h MITgcm-checkpoint68i/pkg/cost/cost.h MITgcm-checkpoint68i/pkg/cost/cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/cost/cost_ad.flow MITgcm-checkpoint68i/pkg/cost/cost_ad_diff.list MITgcm-checkpoint68i/pkg/cost/cost_atlantic_heat.F MITgcm-checkpoint68i/pkg/cost/cost_check.F MITgcm-checkpoint68i/pkg/cost/cost_dependent_init.F MITgcm-checkpoint68i/pkg/cost/cost_depth.F MITgcm-checkpoint68i/pkg/cost/cost_final.F MITgcm-checkpoint68i/pkg/cost/cost_final_restore.F MITgcm-checkpoint68i/pkg/cost/cost_final_store.F MITgcm-checkpoint68i/pkg/cost/cost_init_varia.F MITgcm-checkpoint68i/pkg/cost/cost_readparms.F MITgcm-checkpoint68i/pkg/cost/cost_state_final.F MITgcm-checkpoint68i/pkg/cost/cost_test.F MITgcm-checkpoint68i/pkg/cost/cost_tile.F MITgcm-checkpoint68i/pkg/cost/cost_tracer.F MITgcm-checkpoint68i/pkg/cost/cost_vector.F MITgcm-checkpoint68i/pkg/cost/g_cost.h MITgcm-checkpoint68i/pkg/ctrl/ MITgcm-checkpoint68i/pkg/ctrl/CTRL_FIELDS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_GENARR.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OBCS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OPTIONS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_SIZE.h MITgcm-checkpoint68i/pkg/ctrl/adctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_diff.list MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.flow MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound_tl.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_check.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_driver.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_depth_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_description.tex MITgcm-checkpoint68i/pkg/ctrl/ctrl_dummy.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_mask.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcse.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsn.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcss.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsw.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getrec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_hfacc_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_ctrlvar.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_obcs_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_wet.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_local_params.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_forcing.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_ecco.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_pack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_readparms.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_fname.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_smooth.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_summary.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_swapffields.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_toolbox.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_unpack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_weights.h MITgcm-checkpoint68i/pkg/ctrl/optim.h MITgcm-checkpoint68i/pkg/ctrl/optim_readparms.F MITgcm-checkpoint68i/pkg/debug/ MITgcm-checkpoint68i/pkg/debug/DEBUG_OPTIONS.h MITgcm-checkpoint68i/pkg/debug/chksum_tiled.F MITgcm-checkpoint68i/pkg/debug/debug_ad.flow MITgcm-checkpoint68i/pkg/debug/debug_call.F MITgcm-checkpoint68i/pkg/debug/debug_cs_corner_uv.F MITgcm-checkpoint68i/pkg/debug/debug_enter.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rs.F MITgcm-checkpoint68i/pkg/debug/debug_leave.F MITgcm-checkpoint68i/pkg/debug/debug_msg.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rs.F MITgcm-checkpoint68i/pkg/debug/fill_in_corners_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rs.F MITgcm-checkpoint68i/pkg/diagnostics/ MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_CALC.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_SIZE.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGSTATS_REGIONS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAG_OPTIONS.h MITgcm-checkpoint68i/pkg/diagnostics/diag_calc_psivel.F MITgcm-checkpoint68i/pkg/diagnostics/diag_cg2d.F MITgcm-checkpoint68i/pkg/diagnostics/diag_vegtile_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad.flow MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad_diff.list MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_addtolist.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_calc_phivel.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_field.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_state.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fract_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_early.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_fixed.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_varia.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_p2p.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_vert.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_is_on.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_list_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_main_init.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_read_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_readparms.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_setdiag.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_status_error.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_sum_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_summary.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_switch_onoff.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_utils.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_adj.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ascii_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_close_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_global.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_local.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_others_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_output.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_regions.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_setdiag.F MITgcm-checkpoint68i/pkg/dic/ MITgcm-checkpoint68i/pkg/dic/DIC_ATMOS.h MITgcm-checkpoint68i/pkg/dic/DIC_COST.h MITgcm-checkpoint68i/pkg/dic/DIC_CTRL.h MITgcm-checkpoint68i/pkg/dic/DIC_LOAD.h MITgcm-checkpoint68i/pkg/dic/DIC_OPTIONS.h MITgcm-checkpoint68i/pkg/dic/DIC_VARS.h MITgcm-checkpoint68i/pkg/dic/alk_surfforcing.F MITgcm-checkpoint68i/pkg/dic/bio_export.F MITgcm-checkpoint68i/pkg/dic/calcite_saturation.F MITgcm-checkpoint68i/pkg/dic/car_flux.F MITgcm-checkpoint68i/pkg/dic/car_flux_omega_top.F MITgcm-checkpoint68i/pkg/dic/carbon_chem.F MITgcm-checkpoint68i/pkg/dic/dic_ad.flow MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_diff.list MITgcm-checkpoint68i/pkg/dic/dic_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_diags.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_init.F MITgcm-checkpoint68i/pkg/dic/dic_cost.F MITgcm-checkpoint68i/pkg/dic/dic_diagnostics_init.F MITgcm-checkpoint68i/pkg/dic/dic_fields_load.F MITgcm-checkpoint68i/pkg/dic/dic_fields_update.F MITgcm-checkpoint68i/pkg/dic/dic_ini_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_ini_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_init_fixed.F MITgcm-checkpoint68i/pkg/dic/dic_init_varia.F MITgcm-checkpoint68i/pkg/dic/dic_mnc_init.F MITgcm-checkpoint68i/pkg/dic/dic_read_co2_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_read_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_readparms.F MITgcm-checkpoint68i/pkg/dic/dic_set_control.F MITgcm-checkpoint68i/pkg/dic/dic_solvesaphe.F MITgcm-checkpoint68i/pkg/dic/dic_store_fluxco2.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing_init.F MITgcm-checkpoint68i/pkg/dic/dic_tr_register.F MITgcm-checkpoint68i/pkg/dic/dic_write_pickup.F MITgcm-checkpoint68i/pkg/dic/fe_chem.F MITgcm-checkpoint68i/pkg/dic/insol.F MITgcm-checkpoint68i/pkg/dic/o2_surfforcing.F MITgcm-checkpoint68i/pkg/dic/phos_flux.F MITgcm-checkpoint68i/pkg/down_slope/ MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_OPTIONS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_PARAMS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_SIZE.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_VARS.h MITgcm-checkpoint68i/pkg/down_slope/dwnslp_ad_diff.list MITgcm-checkpoint68i/pkg/down_slope/dwnslp_apply.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_flow.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_rho.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_diagnostics_init.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_fixed.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_varia.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_readparms.F MITgcm-checkpoint68i/pkg/ebm/ MITgcm-checkpoint68i/pkg/ebm/EBM.h MITgcm-checkpoint68i/pkg/ebm/EBM_OPTIONS.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_diff.list MITgcm-checkpoint68i/pkg/ebm/ebm_area_t.F MITgcm-checkpoint68i/pkg/ebm/ebm_atmosphere.F MITgcm-checkpoint68i/pkg/ebm/ebm_driver.F MITgcm-checkpoint68i/pkg/ebm/ebm_ini_vars.F MITgcm-checkpoint68i/pkg/ebm/ebm_load_climatology.F MITgcm-checkpoint68i/pkg/ebm/ebm_readparms.F MITgcm-checkpoint68i/pkg/ebm/ebm_wind_perturb.F MITgcm-checkpoint68i/pkg/ebm/ebm_zonalmean.F MITgcm-checkpoint68i/pkg/ecco/ MITgcm-checkpoint68i/pkg/ecco/ECCO.h MITgcm-checkpoint68i/pkg/ecco/ECCO_OPTIONS.h MITgcm-checkpoint68i/pkg/ecco/ECCO_SIZE.h MITgcm-checkpoint68i/pkg/ecco/cost_averagesfields.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesflags.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesgeneric.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesinit.F MITgcm-checkpoint68i/pkg/ecco/cost_bp_read.F MITgcm-checkpoint68i/pkg/ecco/cost_forcing.F MITgcm-checkpoint68i/pkg/ecco/cost_gencal.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_all.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_assignperiod.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_boxmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_bpv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_customize.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_glbmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_moc.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_seaicev4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sshv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sstv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_transp.F MITgcm-checkpoint68i/pkg/ecco/cost_generic.F MITgcm-checkpoint68i/pkg/ecco/cost_genread.F MITgcm-checkpoint68i/pkg/ecco/cost_hyd.F MITgcm-checkpoint68i/pkg/ecco/cost_internal_params.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs_ageos.F MITgcm-checkpoint68i/pkg/ecco/cost_obcse.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsn.F MITgcm-checkpoint68i/pkg/ecco/cost_obcss.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsvol.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsw.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read_yd.F MITgcm-checkpoint68i/pkg/ecco/cost_ssh.F MITgcm-checkpoint68i/pkg/ecco/ecco_ad.flow MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_diff.list MITgcm-checkpoint68i/pkg/ecco/ecco_check.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost.h MITgcm-checkpoint68i/pkg/ecco/ecco_cost_driver.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_final.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_barfiles.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_weights.F MITgcm-checkpoint68i/pkg/ecco/ecco_diagnostics_init.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_local_params.h MITgcm-checkpoint68i/pkg/ecco/ecco_phys.F MITgcm-checkpoint68i/pkg/ecco/ecco_readparms.F MITgcm-checkpoint68i/pkg/ecco/ecco_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_toolbox.F MITgcm-checkpoint68i/pkg/ecco/stergloh_output.F MITgcm-checkpoint68i/pkg/embed_files/ MITgcm-checkpoint68i/pkg/embed_files/EMBED_FILES_OPTIONS.h MITgcm-checkpoint68i/pkg/embed_files/README.txt MITgcm-checkpoint68i/pkg/embed_files/decode_files.c MITgcm-checkpoint68i/pkg/embed_files/embed_files_init.F MITgcm-checkpoint68i/pkg/exch2/ MITgcm-checkpoint68i/pkg/exch2/Makefile MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_BUFFER.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_PARAMS.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_SIZE.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_TOPOLOGY.h MITgcm-checkpoint68i/pkg/exch2/W2_OPTIONS.h MITgcm-checkpoint68i/pkg/exch2/exch2.flow MITgcm-checkpoint68i/pkg/exch2/exch2_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_diff.list MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_check_depths.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_scal_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_uv_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_s3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_sm_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_agrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_cgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_z_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/w2_cumulsum_z_tile.F MITgcm-checkpoint68i/pkg/exch2/w2_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_eeboot.F MITgcm-checkpoint68i/pkg/exch2/w2_map_procs.F MITgcm-checkpoint68i/pkg/exch2/w2_print_comm_sequence.F MITgcm-checkpoint68i/pkg/exch2/w2_print_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_readparms.F MITgcm-checkpoint68i/pkg/exch2/w2_set_cs6_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_f2f_index.F MITgcm-checkpoint68i/pkg/exch2/w2_set_gen_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_cumsum.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_tiles.F MITgcm-checkpoint68i/pkg/exch2/w2_set_myown_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_single_facet.F MITgcm-checkpoint68i/pkg/exch2/w2_set_tile2tiles.F MITgcm-checkpoint68i/pkg/exf/ MITgcm-checkpoint68i/pkg/exf/EXF_CONSTANTS.h MITgcm-checkpoint68i/pkg/exf/EXF_FIELDS.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_PARAM.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_SIZE.h MITgcm-checkpoint68i/pkg/exf/EXF_OPTIONS.h MITgcm-checkpoint68i/pkg/exf/EXF_PARAM.h MITgcm-checkpoint68i/pkg/exf/TODO.txt MITgcm-checkpoint68i/pkg/exf/exf_ad.flow MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_diff.list MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots__g.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots_ad.F MITgcm-checkpoint68i/pkg/exf/exf_bulkformulae.F MITgcm-checkpoint68i/pkg/exf/exf_check.F MITgcm-checkpoint68i/pkg/exf/exf_check_range.F MITgcm-checkpoint68i/pkg/exf/exf_description.tex MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_fill.F MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_init.F MITgcm-checkpoint68i/pkg/exf/exf_filter_rl.F MITgcm-checkpoint68i/pkg/exf/exf_getclim.F MITgcm-checkpoint68i/pkg/exf/exf_getffield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getffieldrec.F MITgcm-checkpoint68i/pkg/exf/exf_getffields.F MITgcm-checkpoint68i/pkg/exf/exf_getfield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getforcing.F MITgcm-checkpoint68i/pkg/exf/exf_getmonthsrec.F MITgcm-checkpoint68i/pkg/exf/exf_getsurfacefluxes.F MITgcm-checkpoint68i/pkg/exf/exf_getyearlyfieldname.F MITgcm-checkpoint68i/pkg/exf/exf_init_fixed.F MITgcm-checkpoint68i/pkg/exf/exf_init_fld.F MITgcm-checkpoint68i/pkg/exf/exf_init_interp.F MITgcm-checkpoint68i/pkg/exf/exf_init_varia.F MITgcm-checkpoint68i/pkg/exf/exf_interp.F MITgcm-checkpoint68i/pkg/exf/exf_interp_read.F MITgcm-checkpoint68i/pkg/exf/exf_interp_uv.F MITgcm-checkpoint68i/pkg/exf/exf_interpolate.F MITgcm-checkpoint68i/pkg/exf/exf_mapfields.F MITgcm-checkpoint68i/pkg/exf/exf_monitor.F MITgcm-checkpoint68i/pkg/exf/exf_monitor_ad.F MITgcm-checkpoint68i/pkg/exf/exf_radiation.F MITgcm-checkpoint68i/pkg/exf/exf_readparms.F MITgcm-checkpoint68i/pkg/exf/exf_set_fld.F MITgcm-checkpoint68i/pkg/exf/exf_set_gen.F MITgcm-checkpoint68i/pkg/exf/exf_set_obcs.F MITgcm-checkpoint68i/pkg/exf/exf_set_uv.F MITgcm-checkpoint68i/pkg/exf/exf_summary.F MITgcm-checkpoint68i/pkg/exf/exf_swapffields.F MITgcm-checkpoint68i/pkg/exf/exf_weight_sfx_diags.F MITgcm-checkpoint68i/pkg/exf/exf_wind.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle_table.F MITgcm-checkpoint68i/pkg/fizhi/ MITgcm-checkpoint68i/pkg/fizhi/AtoC.F MITgcm-checkpoint68i/pkg/fizhi/CtoA.F MITgcm-checkpoint68i/pkg/fizhi/FIZHI_OPTIONS.h MITgcm-checkpoint68i/pkg/fizhi/cah-dat.h MITgcm-checkpoint68i/pkg/fizhi/cai-dat.h MITgcm-checkpoint68i/pkg/fizhi/chronos.h MITgcm-checkpoint68i/pkg/fizhi/co2-tran3.h MITgcm-checkpoint68i/pkg/fizhi/do_fizhi.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_SHP.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_alarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_chemistry_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_clockstuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagalarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagnostics_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_driver.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_earth_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_fillnegs.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_gwdrag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_chem.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_fixed.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vars.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_veg.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vegsurftiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_io_comms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_lsm.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_lwrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mnc_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_moist.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mpistuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_ocean_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_rayleigh.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_read_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readparms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readwrite_vegtiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_step_diag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_swrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_tendency_apply.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_turb.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_update_time.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_utils.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_wrapper.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_datetime.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_state.F MITgcm-checkpoint68i/pkg/fizhi/getcon.F MITgcm-checkpoint68i/pkg/fizhi/getpwhere.F MITgcm-checkpoint68i/pkg/fizhi/h2o-tran3.h MITgcm-checkpoint68i/pkg/fizhi/o3-tran3.h MITgcm-checkpoint68i/pkg/fizhi/sibber.h MITgcm-checkpoint68i/pkg/fizhi/slprs.F MITgcm-checkpoint68i/pkg/fizhi/snwmid.h MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_corr.F MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_fg.F MITgcm-checkpoint68i/pkg/fizhi/step_physics.F MITgcm-checkpoint68i/pkg/fizhi/update_chemistry_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_earth_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_ocean_exports.F MITgcm-checkpoint68i/pkg/flt/ MITgcm-checkpoint68i/pkg/flt/FLT.h MITgcm-checkpoint68i/pkg/flt/FLT_BUFF.h MITgcm-checkpoint68i/pkg/flt/FLT_OPTIONS.h MITgcm-checkpoint68i/pkg/flt/FLT_SIZE.h MITgcm-checkpoint68i/pkg/flt/README.flt MITgcm-checkpoint68i/pkg/flt/exch2_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch2_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/exch_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/flt_down.F MITgcm-checkpoint68i/pkg/flt/flt_exch2.F MITgcm-checkpoint68i/pkg/flt/flt_exchg.F MITgcm-checkpoint68i/pkg/flt/flt_init_fixed.F MITgcm-checkpoint68i/pkg/flt/flt_init_varia.F MITgcm-checkpoint68i/pkg/flt/flt_interp_linear.F MITgcm-checkpoint68i/pkg/flt/flt_main.F MITgcm-checkpoint68i/pkg/flt/flt_mapping.F MITgcm-checkpoint68i/pkg/flt/flt_readparms.F MITgcm-checkpoint68i/pkg/flt/flt_runga2.F MITgcm-checkpoint68i/pkg/flt/flt_runga4.F MITgcm-checkpoint68i/pkg/flt/flt_traj.F MITgcm-checkpoint68i/pkg/flt/flt_up.F MITgcm-checkpoint68i/pkg/flt/flt_write_pickup.F MITgcm-checkpoint68i/pkg/frazil/ MITgcm-checkpoint68i/pkg/frazil/FRAZIL.h MITgcm-checkpoint68i/pkg/frazil/FRAZIL_OPTIONS.h MITgcm-checkpoint68i/pkg/frazil/frazil_ad.flow MITgcm-checkpoint68i/pkg/frazil/frazil_ad_diff.list MITgcm-checkpoint68i/pkg/frazil/frazil_calc_rhs.F MITgcm-checkpoint68i/pkg/frazil/frazil_description.tex MITgcm-checkpoint68i/pkg/frazil/frazil_diagnostics_init.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_fixed.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_varia.F MITgcm-checkpoint68i/pkg/frazil/frazil_tendency_apply.F MITgcm-checkpoint68i/pkg/gchem/ MITgcm-checkpoint68i/pkg/gchem/GCHEM.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_FIELDS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_OPTIONS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_SIZE.h MITgcm-checkpoint68i/pkg/gchem/gchem_ad_diff.list MITgcm-checkpoint68i/pkg/gchem/gchem_add_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_calc_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_check.F MITgcm-checkpoint68i/pkg/gchem/gchem_diagnostics_init.F MITgcm-checkpoint68i/pkg/gchem/gchem_fields_load.F MITgcm-checkpoint68i/pkg/gchem/gchem_forcing_sep.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_fixed.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_vari.F MITgcm-checkpoint68i/pkg/gchem/gchem_output.F MITgcm-checkpoint68i/pkg/gchem/gchem_readparms.F MITgcm-checkpoint68i/pkg/gchem/gchem_surfmean.F MITgcm-checkpoint68i/pkg/gchem/gchem_tr_register.F MITgcm-checkpoint68i/pkg/gchem/gchem_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/ MITgcm-checkpoint68i/pkg/generic_advdiff/GAD.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_FLUX_LIMITER.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_OPTIONS.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_SOM_VARS.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_diff.list MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advection.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advscheme.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_calc_rhs.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_check.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_del2.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_init.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_state.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_exch_som.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_implicit_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_fixed.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_varia.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_plm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_read_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_advect.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_exchanges.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_fill_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_lim_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_prep_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3c4_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/generic_advdiff.tex MITgcm-checkpoint68i/pkg/generic_advdiff/salt_fill.F MITgcm-checkpoint68i/pkg/ggl90/ MITgcm-checkpoint68i/pkg/ggl90/GGL90.h MITgcm-checkpoint68i/pkg/ggl90/GGL90_OPTIONS.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_diff.list MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_diff.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_visc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_check.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_diagnostics_init.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_exchanges.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_idemix.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_fixed.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_varia.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_output.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_read_pickup.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_readparms.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/ MITgcm-checkpoint68i/pkg/gmredi/GMREDI.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_OPTIONS.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_TAVE.h MITgcm-checkpoint68i/pkg/gmredi/README_ADJOINT MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad.flow MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad_diff.list MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_bates_k.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_diff.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_eigs.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_b.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_bvp.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_qgleith.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_tensor.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_urms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_check.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_description.tex MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_fill.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_impl.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_do_exch.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_fixed.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_varia.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_mnc_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_output.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_read_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_readparms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_residual_flow.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_rtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_limit.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_psi.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_xtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_ytransport.F MITgcm-checkpoint68i/pkg/gmredi/submeso_calc_psi.F MITgcm-checkpoint68i/pkg/grdchk/ MITgcm-checkpoint68i/pkg/grdchk/GRDCHK_OPTIONS.h MITgcm-checkpoint68i/pkg/grdchk/grdchk.h MITgcm-checkpoint68i/pkg/grdchk/grdchk_check.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_description.tex MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_obcs_mask.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_position.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getadxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_init.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_loc.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_main.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_print.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_readparms.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_setxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_summary.F MITgcm-checkpoint68i/pkg/gridalt/ MITgcm-checkpoint68i/pkg/gridalt/GRIDALT_OPTIONS.h MITgcm-checkpoint68i/pkg/gridalt/dyn2phys.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_diagnostics_init.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_initialise.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_mapping.h MITgcm-checkpoint68i/pkg/gridalt/gridalt_update.F MITgcm-checkpoint68i/pkg/gridalt/make_phys_grid.F MITgcm-checkpoint68i/pkg/gridalt/phys2dyn.F MITgcm-checkpoint68i/pkg/icefront/ MITgcm-checkpoint68i/pkg/icefront/ICEFRONT.h MITgcm-checkpoint68i/pkg/icefront/ICEFRONT_OPTIONS.h MITgcm-checkpoint68i/pkg/icefront/ICFSymbol.txt MITgcm-checkpoint68i/pkg/icefront/icefront_check.F MITgcm-checkpoint68i/pkg/icefront/icefront_description.tex MITgcm-checkpoint68i/pkg/icefront/icefront_diagnostics_init.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_fixed.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_varia.F MITgcm-checkpoint68i/pkg/icefront/icefront_readparms.F MITgcm-checkpoint68i/pkg/icefront/icefront_tendency_apply.F MITgcm-checkpoint68i/pkg/icefront/icefront_thermodynamics.F MITgcm-checkpoint68i/pkg/kl10/ MITgcm-checkpoint68i/pkg/kl10/KL10.h MITgcm-checkpoint68i/pkg/kl10/KL10_DIAGS.h MITgcm-checkpoint68i/pkg/kl10/KL10_OPTIONS.h MITgcm-checkpoint68i/pkg/kl10/KL10_TAVE.h MITgcm-checkpoint68i/pkg/kl10/kl10_calc.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_diff.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_visc.F MITgcm-checkpoint68i/pkg/kl10/kl10_check.F MITgcm-checkpoint68i/pkg/kl10/kl10_diagnostics_init.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_fixed.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_varia.F MITgcm-checkpoint68i/pkg/kl10/kl10_output.F MITgcm-checkpoint68i/pkg/kl10/kl10_readparms.F MITgcm-checkpoint68i/pkg/kpp/ MITgcm-checkpoint68i/pkg/kpp/KPP.h MITgcm-checkpoint68i/pkg/kpp/KPP_OPTIONS.h MITgcm-checkpoint68i/pkg/kpp/KPP_PARAMS.h MITgcm-checkpoint68i/pkg/kpp/KPP_TAVE.h MITgcm-checkpoint68i/pkg/kpp/kpp_ad_diff.list MITgcm-checkpoint68i/pkg/kpp/kpp_calc.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_t.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_visc.F MITgcm-checkpoint68i/pkg/kpp/kpp_check.F MITgcm-checkpoint68i/pkg/kpp/kpp_description.tex MITgcm-checkpoint68i/pkg/kpp/kpp_diagnostics_init.F MITgcm-checkpoint68i/pkg/kpp/kpp_do_exch.F MITgcm-checkpoint68i/pkg/kpp/kpp_forcing_surf.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_fixed.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_varia.F MITgcm-checkpoint68i/pkg/kpp/kpp_output.F MITgcm-checkpoint68i/pkg/kpp/kpp_readparms.F MITgcm-checkpoint68i/pkg/kpp/kpp_routines.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_t.F MITgcm-checkpoint68i/pkg/land/ MITgcm-checkpoint68i/pkg/land/LAND_OPTIONS.h MITgcm-checkpoint68i/pkg/land/LAND_PARAMS.h MITgcm-checkpoint68i/pkg/land/LAND_SIZE.h MITgcm-checkpoint68i/pkg/land/LAND_TAVE.h MITgcm-checkpoint68i/pkg/land/LAND_VARS.h MITgcm-checkpoint68i/pkg/land/land_albedo.F MITgcm-checkpoint68i/pkg/land/land_check.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_init.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_state.F MITgcm-checkpoint68i/pkg/land/land_do_diags.F MITgcm-checkpoint68i/pkg/land/land_impl_temp.F MITgcm-checkpoint68i/pkg/land/land_ini_vars.F MITgcm-checkpoint68i/pkg/land/land_init_fixed.F MITgcm-checkpoint68i/pkg/land/land_mnc_init.F MITgcm-checkpoint68i/pkg/land/land_monitor.F MITgcm-checkpoint68i/pkg/land/land_output.F MITgcm-checkpoint68i/pkg/land/land_read_pickup.F MITgcm-checkpoint68i/pkg/land/land_readparms.F MITgcm-checkpoint68i/pkg/land/land_stepfwd.F MITgcm-checkpoint68i/pkg/land/land_write_pickup.F MITgcm-checkpoint68i/pkg/layers/ MITgcm-checkpoint68i/pkg/layers/LAYERS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_OPTIONS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_SIZE.h MITgcm-checkpoint68i/pkg/layers/layers_ad_diff.list MITgcm-checkpoint68i/pkg/layers/layers_calc.F MITgcm-checkpoint68i/pkg/layers/layers_check.F MITgcm-checkpoint68i/pkg/layers/layers_diagnostics_init.F MITgcm-checkpoint68i/pkg/layers/layers_fluxcalc.F MITgcm-checkpoint68i/pkg/layers/layers_init_fixed.F MITgcm-checkpoint68i/pkg/layers/layers_init_varia.F MITgcm-checkpoint68i/pkg/layers/layers_mnc_init.F MITgcm-checkpoint68i/pkg/layers/layers_output.F MITgcm-checkpoint68i/pkg/layers/layers_readparms.F MITgcm-checkpoint68i/pkg/layers/layers_save.F MITgcm-checkpoint68i/pkg/layers/layers_thermodynamics.F MITgcm-checkpoint68i/pkg/layers/layers_wsurf_tr.F MITgcm-checkpoint68i/pkg/longstep/ MITgcm-checkpoint68i/pkg/longstep/LONGSTEP.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_OPTIONS.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_PARAMS.h MITgcm-checkpoint68i/pkg/longstep/README MITgcm-checkpoint68i/pkg/longstep/longstep_average.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_check_iters.F MITgcm-checkpoint68i/pkg/longstep/longstep_correction_step.F MITgcm-checkpoint68i/pkg/longstep/longstep_diagnostics_init.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_rs.F MITgcm-checkpoint68i/pkg/longstep/longstep_forcing_surf.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_fixed.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_varia.F MITgcm-checkpoint68i/pkg/longstep/longstep_readparms.F MITgcm-checkpoint68i/pkg/longstep/longstep_reset_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_thermodynamics.F MITgcm-checkpoint68i/pkg/matrix/ MITgcm-checkpoint68i/pkg/matrix/MATRIX.h MITgcm-checkpoint68i/pkg/matrix/MATRIX_OPTIONS.h MITgcm-checkpoint68i/pkg/matrix/matrix_init_varia.F MITgcm-checkpoint68i/pkg/matrix/matrix_output.F MITgcm-checkpoint68i/pkg/matrix/matrix_readparms.F MITgcm-checkpoint68i/pkg/matrix/matrix_store_tendency.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_grid.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_tendency.F MITgcm-checkpoint68i/pkg/mdsio/ MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_3D.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_WH.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_OPTIONS.h MITgcm-checkpoint68i/pkg/mdsio/mdsio_ad.flow MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertorl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_check4file.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_facef_read.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_readvec_loc.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_segxtorx_2d.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_metafiles.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writelocal.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writevec_loc.F MITgcm-checkpoint68i/pkg/mnc/ MITgcm-checkpoint68i/pkg/mnc/CPP_OPTIONS.t MITgcm-checkpoint68i/pkg/mnc/MNC_BUFF.h MITgcm-checkpoint68i/pkg/mnc/MNC_COMMON.h MITgcm-checkpoint68i/pkg/mnc/MNC_OPTIONS.h MITgcm-checkpoint68i/pkg/mnc/MNC_PARAMS.h MITgcm-checkpoint68i/pkg/mnc/MNC_SIZE.h MITgcm-checkpoint68i/pkg/mnc/Makefile MITgcm-checkpoint68i/pkg/mnc/PACKAGES_CONFIG.t MITgcm-checkpoint68i/pkg/mnc/README.txt MITgcm-checkpoint68i/pkg/mnc/SIZE.t MITgcm-checkpoint68i/pkg/mnc/TESTING_README.txt MITgcm-checkpoint68i/pkg/mnc/build_netcdf_stubs MITgcm-checkpoint68i/pkg/mnc/mnc_ad.flow MITgcm-checkpoint68i/pkg/mnc/mnc_create_dir.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_citer.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_cvars.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_fsize.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_missingvals.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_model_attr.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_readwrite.template MITgcm-checkpoint68i/pkg/mnc/mnc_cw_udim.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_write_grid_info.F MITgcm-checkpoint68i/pkg/mnc/mnc_cwrapper.F MITgcm-checkpoint68i/pkg/mnc/mnc_description.tex MITgcm-checkpoint68i/pkg/mnc/mnc_dim.F MITgcm-checkpoint68i/pkg/mnc/mnc_dump.F MITgcm-checkpoint68i/pkg/mnc/mnc_file.F MITgcm-checkpoint68i/pkg/mnc/mnc_grid.F MITgcm-checkpoint68i/pkg/mnc/mnc_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_readparms.F MITgcm-checkpoint68i/pkg/mnc/mnc_test_001.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_002.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_utils.T MITgcm-checkpoint68i/pkg/mnc/mnc_update_time.F MITgcm-checkpoint68i/pkg/mnc/mnc_utils.F MITgcm-checkpoint68i/pkg/mnc/mnc_var.F MITgcm-checkpoint68i/pkg/mnc/parse_local_info MITgcm-checkpoint68i/pkg/mnc/pre-defined_grids.txt MITgcm-checkpoint68i/pkg/mom_common/ MITgcm-checkpoint68i/pkg/mom_common/MOM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_common/MOM_VISC.h MITgcm-checkpoint68i/pkg/mom_common/mom_calc_3d_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_absvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hdiv.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hfacz.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_ke.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_relvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_tension.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_visc.F MITgcm-checkpoint68i/pkg/mom_common/mom_common_ad_diff.list MITgcm-checkpoint68i/pkg/mom_common/mom_diagnostics_init.F MITgcm-checkpoint68i/pkg/mom_common/mom_hdissip.F MITgcm-checkpoint68i/pkg/mom_common/mom_init_fixed.F MITgcm-checkpoint68i/pkg/mom_common/mom_quasihydrostatic.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_uv_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_limit.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_stretch.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_smag_3d.F MITgcm-checkpoint68i/pkg/mom_fluxform/ MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM.h MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_fluxform/mom_calc_rtrans.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform_ad_diff.list MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_uu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_vu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_wu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_del2u.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_yviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_uv_boundary.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_uv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_vv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_wv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_del2v.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_yviscflux.F MITgcm-checkpoint68i/pkg/mom_vecinv/ MITgcm-checkpoint68i/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv_ad_diff.list MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_del2uv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_hdissip.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_vertshear.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_vertshear.F MITgcm-checkpoint68i/pkg/monitor/ MITgcm-checkpoint68i/pkg/monitor/MONITOR.h MITgcm-checkpoint68i/pkg/monitor/MONITOR_OPTIONS.h MITgcm-checkpoint68i/pkg/monitor/mon_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw2.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_description.tex MITgcm-checkpoint68i/pkg/monitor/mon_init.F MITgcm-checkpoint68i/pkg/monitor/mon_ke.F MITgcm-checkpoint68i/pkg/monitor/mon_out.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_set_iounit.F MITgcm-checkpoint68i/pkg/monitor/mon_set_pref.F MITgcm-checkpoint68i/pkg/monitor/mon_solution.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_latbnd_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_surfcor.F MITgcm-checkpoint68i/pkg/monitor/mon_vort3.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rs.F MITgcm-checkpoint68i/pkg/monitor/monitor.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.flow MITgcm-checkpoint68i/pkg/monitor/monitor_description.tex MITgcm-checkpoint68i/pkg/monitor/monitor_g.F MITgcm-checkpoint68i/pkg/my82/ MITgcm-checkpoint68i/pkg/my82/MY82.h MITgcm-checkpoint68i/pkg/my82/MY82_OPTIONS.h MITgcm-checkpoint68i/pkg/my82/my82_calc.F MITgcm-checkpoint68i/pkg/my82/my82_calc_diff.F MITgcm-checkpoint68i/pkg/my82/my82_calc_visc.F MITgcm-checkpoint68i/pkg/my82/my82_check.F MITgcm-checkpoint68i/pkg/my82/my82_diagnostics_init.F MITgcm-checkpoint68i/pkg/my82/my82_init_fixed.F MITgcm-checkpoint68i/pkg/my82/my82_init_varia.F MITgcm-checkpoint68i/pkg/my82/my82_output.F MITgcm-checkpoint68i/pkg/my82/my82_readparms.F MITgcm-checkpoint68i/pkg/my82/my82_ri_number.F MITgcm-checkpoint68i/pkg/mypackage/ MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE.h MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE_OPTIONS.h MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad.flow MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad_diff.list MITgcm-checkpoint68i/pkg/mypackage/mypackage_calc_rhs.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_check.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_description.tex MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_state.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_fixed.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_varia.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_mnc_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_read_pickup.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_readparms.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_tendency_apply.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/ MITgcm-checkpoint68i/pkg/obcs/OBCS_FIELDS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_GRID.h MITgcm-checkpoint68i/pkg/obcs/OBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PARAMS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PTRACERS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_SEAICE.h MITgcm-checkpoint68i/pkg/obcs/ORLANSKI.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad.flow MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_diff.list MITgcm-checkpoint68i/pkg/obcs/obcs_add_tides.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_eta.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ptracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_r_star.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_seaice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_surf_dr.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ts.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uv.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_w.F MITgcm-checkpoint68i/pkg/obcs/obcs_balance_flow.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc_stevens.F MITgcm-checkpoint68i/pkg/obcs/obcs_check.F MITgcm-checkpoint68i/pkg/obcs/obcs_check_depths.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_description.tex MITgcm-checkpoint68i/pkg/obcs/obcs_diag_balance.F MITgcm-checkpoint68i/pkg/obcs/obcs_exchanges.F MITgcm-checkpoint68i/pkg/obcs/obcs_exf_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_fields_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_fixed.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_variables.F MITgcm-checkpoint68i/pkg/obcs/obcs_mon_stats.F MITgcm-checkpoint68i/pkg/obcs/obcs_monitor.F MITgcm-checkpoint68i/pkg/obcs/obcs_output.F MITgcm-checkpoint68i/pkg/obcs/obcs_prescribe_read.F MITgcm-checkpoint68i/pkg/obcs/obcs_read_pickup.F MITgcm-checkpoint68i/pkg/obcs/obcs_readparms.F MITgcm-checkpoint68i/pkg/obcs/obcs_save_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_seaice_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_set_connect.F MITgcm-checkpoint68i/pkg/obcs/obcs_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_u1_adv_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/orlanski_east.F MITgcm-checkpoint68i/pkg/obcs/orlanski_init.F MITgcm-checkpoint68i/pkg/obcs/orlanski_north.F MITgcm-checkpoint68i/pkg/obcs/orlanski_south.F MITgcm-checkpoint68i/pkg/obcs/orlanski_west.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_TAVE.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCNCPL.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCN_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_apply_import.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_check_cplconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_diags.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_ocnconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_atmconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_store_my_data.F MITgcm-checkpoint68i/pkg/offline/ MITgcm-checkpoint68i/pkg/offline/OFFLINE.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_OPTIONS.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_SWITCH.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_diff.list MITgcm-checkpoint68i/pkg/offline/offline_check.F MITgcm-checkpoint68i/pkg/offline/offline_fields_load.F MITgcm-checkpoint68i/pkg/offline/offline_get_diffus.F MITgcm-checkpoint68i/pkg/offline/offline_init_varia.F MITgcm-checkpoint68i/pkg/offline/offline_readparms.F MITgcm-checkpoint68i/pkg/offline/offline_reset_parms.F MITgcm-checkpoint68i/pkg/openad/ MITgcm-checkpoint68i/pkg/openad/OPENAD_OPTIONS.h MITgcm-checkpoint68i/pkg/openad/ad_s_different_multiple.F MITgcm-checkpoint68i/pkg/openad/ad_s_ifnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_ilnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_mds_reclen.F MITgcm-checkpoint68i/pkg/openad/externalDummies.F MITgcm-checkpoint68i/pkg/openad/findAndDiff.bash MITgcm-checkpoint68i/pkg/openad/inner_do_loop.F MITgcm-checkpoint68i/pkg/openad/openad_ad_diff.list MITgcm-checkpoint68i/pkg/openad/openad_checkpointInit.F MITgcm-checkpoint68i/pkg/openad/openad_dumpAdjoint.F MITgcm-checkpoint68i/pkg/openad/seawater.F MITgcm-checkpoint68i/pkg/openad/the_model_main.F MITgcm-checkpoint68i/pkg/opps/ MITgcm-checkpoint68i/pkg/opps/OPPS.h MITgcm-checkpoint68i/pkg/opps/OPPS_OPTIONS.h MITgcm-checkpoint68i/pkg/opps/opps_calc.F MITgcm-checkpoint68i/pkg/opps/opps_check.F MITgcm-checkpoint68i/pkg/opps/opps_init.F MITgcm-checkpoint68i/pkg/opps/opps_interface.F MITgcm-checkpoint68i/pkg/opps/opps_readparms.F MITgcm-checkpoint68i/pkg/pkg_depend MITgcm-checkpoint68i/pkg/pkg_groups MITgcm-checkpoint68i/pkg/pp81/ MITgcm-checkpoint68i/pkg/pp81/PP81.h MITgcm-checkpoint68i/pkg/pp81/PP81_OPTIONS.h MITgcm-checkpoint68i/pkg/pp81/pp81_calc.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_diff.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_visc.F MITgcm-checkpoint68i/pkg/pp81/pp81_check.F MITgcm-checkpoint68i/pkg/pp81/pp81_diagnostics_init.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_fixed.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_varia.F MITgcm-checkpoint68i/pkg/pp81/pp81_output.F MITgcm-checkpoint68i/pkg/pp81/pp81_readparms.F MITgcm-checkpoint68i/pkg/pp81/pp81_ri_number.F MITgcm-checkpoint68i/pkg/profiles/ MITgcm-checkpoint68i/pkg/profiles/PROFILES_OPTIONS.h MITgcm-checkpoint68i/pkg/profiles/PROFILES_SIZE.h MITgcm-checkpoint68i/pkg/profiles/active_file_control_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.flow MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_ad.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_g.F MITgcm-checkpoint68i/pkg/profiles/cost_profiles.F MITgcm-checkpoint68i/pkg/profiles/profiles.flow MITgcm-checkpoint68i/pkg/profiles/profiles.h MITgcm-checkpoint68i/pkg/profiles/profiles_ad_diff.list MITgcm-checkpoint68i/pkg/profiles/profiles_findunit.F MITgcm-checkpoint68i/pkg/profiles/profiles_ini_io.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_fixed.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_ncfile.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_varia.F MITgcm-checkpoint68i/pkg/profiles/profiles_inloop.F MITgcm-checkpoint68i/pkg/profiles/profiles_interp.F MITgcm-checkpoint68i/pkg/profiles/profiles_readparms.F MITgcm-checkpoint68i/pkg/profiles/profiles_readvector.F MITgcm-checkpoint68i/pkg/ptracers/ MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_FIELDS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_MOD.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_OPTIONS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_PARAMS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_SIZE.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_START.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_TAVE.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad.flow MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_diff.list MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_dump.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_adcommon.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_apply_forcing.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_calc_wsurf_tr.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_convect.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_debug.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_data_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_fields_blocking_exch.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_forcing_surf.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_fixed.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_varia.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_integrate.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_mnc_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor_ad.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_output.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_read_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_readparms.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_reset.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_set_iolabel.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_switch_onoff.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_turnoff_io.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_zonal_filt_apply.F MITgcm-checkpoint68i/pkg/rbcs/ MITgcm-checkpoint68i/pkg/rbcs/RBCS_FIELDS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_PARAMS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_SIZE.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_diff.list MITgcm-checkpoint68i/pkg/rbcs/rbcs_add_tendency.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_fields_load.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_fixed.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_varia.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_readparms.F MITgcm-checkpoint68i/pkg/regrid/ MITgcm-checkpoint68i/pkg/regrid/Makefile MITgcm-checkpoint68i/pkg/regrid/REGRID.h MITgcm-checkpoint68i/pkg/regrid/REGRID_OPTIONS.h MITgcm-checkpoint68i/pkg/regrid/REGRID_SIZE.h MITgcm-checkpoint68i/pkg/regrid/regrid_check.F MITgcm-checkpoint68i/pkg/regrid/regrid_description.tex MITgcm-checkpoint68i/pkg/regrid/regrid_init_fixed.F MITgcm-checkpoint68i/pkg/regrid/regrid_init_varia.F MITgcm-checkpoint68i/pkg/regrid/regrid_mnc_init.F MITgcm-checkpoint68i/pkg/regrid/regrid_readparms.F MITgcm-checkpoint68i/pkg/regrid/regrid_scalar_out.template MITgcm-checkpoint68i/pkg/runclock/ MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK.h MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK_OPTIONS.h MITgcm-checkpoint68i/pkg/runclock/runclock_check.F MITgcm-checkpoint68i/pkg/runclock/runclock_continue.F MITgcm-checkpoint68i/pkg/runclock/runclock_gettime.F MITgcm-checkpoint68i/pkg/runclock/runclock_init.F MITgcm-checkpoint68i/pkg/runclock/runclock_readparms.F MITgcm-checkpoint68i/pkg/rw/ MITgcm-checkpoint68i/pkg/rw/RW_MFLDS.h MITgcm-checkpoint68i/pkg/rw/RW_OPTIONS.h MITgcm-checkpoint68i/pkg/rw/get_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/read_mflds.F MITgcm-checkpoint68i/pkg/rw/read_rec.F MITgcm-checkpoint68i/pkg/rw/rw_ad.flow MITgcm-checkpoint68i/pkg/rw/rw_ad_diff.list MITgcm-checkpoint68i/pkg/rw/rw_get_suffix.F MITgcm-checkpoint68i/pkg/rw/set_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/write_local_rl.F MITgcm-checkpoint68i/pkg/rw/write_local_rs.F MITgcm-checkpoint68i/pkg/rw/write_rec.F MITgcm-checkpoint68i/pkg/salt_plume/ MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME.h MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME_OPTIONS.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_diff.list MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_apply.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_calc_depth.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_check.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_description.tex MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_fill.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_do_exch.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_forcing_surf.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_frac.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_fixed.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_varia.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_mnc_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_readparms.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_s.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_t.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_volfrac.F MITgcm-checkpoint68i/pkg/sbo/ MITgcm-checkpoint68i/pkg/sbo/SBO.h MITgcm-checkpoint68i/pkg/sbo/SBO_OPTIONS.h MITgcm-checkpoint68i/pkg/sbo/sbo_calc.F MITgcm-checkpoint68i/pkg/sbo/sbo_check.F MITgcm-checkpoint68i/pkg/sbo/sbo_description.tex MITgcm-checkpoint68i/pkg/sbo/sbo_output.F MITgcm-checkpoint68i/pkg/sbo/sbo_readparms.F MITgcm-checkpoint68i/pkg/sbo/sbo_rho.F MITgcm-checkpoint68i/pkg/seaice/ MITgcm-checkpoint68i/pkg/seaice/SEAICE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_COST.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_OPTIONS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_PARAMS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_SIZE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TAVE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TRACER.h MITgcm-checkpoint68i/pkg/seaice/advect.F MITgcm-checkpoint68i/pkg/seaice/cost_ice_test.F MITgcm-checkpoint68i/pkg/seaice/diffus.F MITgcm-checkpoint68i/pkg/seaice/dynsolver.F MITgcm-checkpoint68i/pkg/seaice/lsr.F MITgcm-checkpoint68i/pkg/seaice/ostres.F MITgcm-checkpoint68i/pkg/seaice/seaice.flow MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_diff.list MITgcm-checkpoint68i/pkg/seaice/seaice_ad_dump.F MITgcm-checkpoint68i/pkg/seaice/seaice_advdiff.F MITgcm-checkpoint68i/pkg/seaice/seaice_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_bottomdrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_budget_ocean.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_ice_strength.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_lhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_residual.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_rhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_strainrates.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_stressdiv.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_viscosities.F MITgcm-checkpoint68i/pkg/seaice/seaice_check.F MITgcm-checkpoint68i/pkg/seaice/seaice_check_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_areasst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_concentration.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_driver.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_export.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_final.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sensi.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sss.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_weights.F MITgcm-checkpoint68i/pkg/seaice/seaice_ctrl_map_ini.F MITgcm-checkpoint68i/pkg/seaice/seaice_description.tex MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_state.F MITgcm-checkpoint68i/pkg/seaice/seaice_diffusion.F MITgcm-checkpoint68i/pkg/seaice/seaice_do_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_dynsolver.F MITgcm-checkpoint68i/pkg/seaice/seaice_evp.F MITgcm-checkpoint68i/pkg/seaice/seaice_fake.F MITgcm-checkpoint68i/pkg/seaice/seaice_fgmres.F MITgcm-checkpoint68i/pkg/seaice/seaice_freedrift.F MITgcm-checkpoint68i/pkg/seaice/seaice_get_dynforcing.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth_adx.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_redist.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_remap.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_sum.F MITgcm-checkpoint68i/pkg/seaice/seaice_jacvec.F MITgcm-checkpoint68i/pkg/seaice/seaice_jfnk.F MITgcm-checkpoint68i/pkg/seaice/seaice_krylov.F MITgcm-checkpoint68i/pkg/seaice/seaice_lsr.F MITgcm-checkpoint68i/pkg/seaice/seaice_map_thsice.F MITgcm-checkpoint68i/pkg/seaice/seaice_mnc_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_model.F MITgcm-checkpoint68i/pkg/seaice/seaice_mom_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor_ad.F MITgcm-checkpoint68i/pkg/seaice/seaice_obcs_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_ocean_stress.F MITgcm-checkpoint68i/pkg/seaice/seaice_oceandrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_preconditioner.F MITgcm-checkpoint68i/pkg/seaice/seaice_prepare_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_read_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_readparms.F MITgcm-checkpoint68i/pkg/seaice/seaice_reg_ridge.F MITgcm-checkpoint68i/pkg/seaice/seaice_solve4temp.F MITgcm-checkpoint68i/pkg/seaice/seaice_summary.F MITgcm-checkpoint68i/pkg/seaice/seaice_tracer_phys.F MITgcm-checkpoint68i/pkg/seaice/seaice_turnoff_io.F MITgcm-checkpoint68i/pkg/seaice/seaice_write_pickup.F MITgcm-checkpoint68i/pkg/shap_filt/ MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT.h MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_ad_diff.list MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_ts.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_uv.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_computvort.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_diagnostics_init.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_init_fixed.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_readparms.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_relvort3.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracerold.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_u.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2c.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_v.F MITgcm-checkpoint68i/pkg/shelfice/ MITgcm-checkpoint68i/pkg/shelfice/SHELFICE.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_COST.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_OPTIONS.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_TAVE.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_diff.list MITgcm-checkpoint68i/pkg/shelfice/shelfice_check.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_accumulate.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_final.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_shifwflx.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_diagnostics_drag.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing_surf.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_depths.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_fixed.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_varia.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mask_seaice.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mnc_init.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_output.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_read_pickup.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_readparms.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_c_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_calc_w.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_state.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_uv_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remeshing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_step_icemass.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_thermodynamics.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_u_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_v_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_write_pickup.F MITgcm-checkpoint68i/pkg/showflops/ MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_INIT.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_OPTIONS.h MITgcm-checkpoint68i/pkg/showflops/showflops_ad.flow MITgcm-checkpoint68i/pkg/showflops/showflops_init.F MITgcm-checkpoint68i/pkg/showflops/showflops_inloop.F MITgcm-checkpoint68i/pkg/showflops/showflops_insolve.F MITgcm-checkpoint68i/pkg/smooth/ MITgcm-checkpoint68i/pkg/smooth/SMOOTH.h MITgcm-checkpoint68i/pkg/smooth/SMOOTH_OPTIONS.h MITgcm-checkpoint68i/pkg/smooth/smooth2d.F MITgcm-checkpoint68i/pkg/smooth/smooth3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_ad_diff.list MITgcm-checkpoint68i/pkg/smooth/smooth_basic2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_check.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2dw.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_description.tex MITgcm-checkpoint68i/pkg/smooth/smooth_diff2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_diff3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_hetero2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_impldiff.F MITgcm-checkpoint68i/pkg/smooth/smooth_init2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_fixed.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_varia.F MITgcm-checkpoint68i/pkg/smooth/smooth_readparms.F MITgcm-checkpoint68i/pkg/smooth/smooth_rhs.F MITgcm-checkpoint68i/pkg/sphere/ MITgcm-checkpoint68i/pkg/sphere/exch_all_2d_rl.F MITgcm-checkpoint68i/pkg/sphere/sphere.F MITgcm-checkpoint68i/pkg/sphere/sphere.h MITgcm-checkpoint68i/pkg/sphere/sphere_ad.flow MITgcm-checkpoint68i/pkg/sphere/sphere_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/ MITgcm-checkpoint68i/pkg/streamice/STREAMICE.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_ADV.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_BDRY.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CG.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CTRL_FLUX.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_OPTIONS.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_PETSC.h MITgcm-checkpoint68i/pkg/streamice/adstreamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/adstreamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_prime_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice_prime.F MITgcm-checkpoint68i/pkg/streamice/phi_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/slope_limiter.F MITgcm-checkpoint68i/pkg/streamice/streamice.flow MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_x.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_y.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_front.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_2dtracer.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_thickness.F MITgcm-checkpoint68i/pkg/streamice/streamice_apply_flux_ctrl.F MITgcm-checkpoint68i/pkg/streamice/streamice_bstress_exponent.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_functions.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_matfree.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_wrapper.F MITgcm-checkpoint68i/pkg/streamice/streamice_check.F MITgcm-checkpoint68i/pkg/streamice/streamice_cost_surf_accum.F MITgcm-checkpoint68i/pkg/streamice/streamice_diagnostics_state.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_fd.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_ppm.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump_ad.F MITgcm-checkpoint68i/pkg/streamice/streamice_fields_load.F MITgcm-checkpoint68i/pkg/streamice/streamice_finalize_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_forced_buttress.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_fp_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_fp_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_diagnostics.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_fixed.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_varia.F MITgcm-checkpoint68i/pkg/streamice/streamice_initialise_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/streamice_petsc_numerate.F MITgcm-checkpoint68i/pkg/streamice/streamice_petscmatdestroy.F MITgcm-checkpoint68i/pkg/streamice/streamice_read_pickup.F MITgcm-checkpoint68i/pkg/streamice/streamice_readparms.F MITgcm-checkpoint68i/pkg/streamice/streamice_taub.F MITgcm-checkpoint68i/pkg/streamice/streamice_timestep.F MITgcm-checkpoint68i/pkg/streamice/streamice_tridiag_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_upd_ffrac_uncoupled.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phistage.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve_openad.F MITgcm-checkpoint68i/pkg/streamice/streamice_velmask_upd.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta_hybrid.F MITgcm-checkpoint68i/pkg/streamice/streamice_write_pickup.F MITgcm-checkpoint68i/pkg/thsice/ MITgcm-checkpoint68i/pkg/thsice/THSICE_COST.h MITgcm-checkpoint68i/pkg/thsice/THSICE_DEBUG.h MITgcm-checkpoint68i/pkg/thsice/THSICE_OPTIONS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_PARAMS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_SIZE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_TAVE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_VARS.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad.flow MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_diff.list MITgcm-checkpoint68i/pkg/thsice/thsice_advdiff.F MITgcm-checkpoint68i/pkg/thsice/thsice_advection.F MITgcm-checkpoint68i/pkg/thsice/thsice_albedo.F MITgcm-checkpoint68i/pkg/thsice/thsice_ave.F MITgcm-checkpoint68i/pkg/thsice/thsice_balance_frw.F MITgcm-checkpoint68i/pkg/thsice/thsice_calc_thickn.F MITgcm-checkpoint68i/pkg/thsice/thsice_check.F MITgcm-checkpoint68i/pkg/thsice/thsice_check_conserv.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_driver.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_final.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_init_varia.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_test.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_state.F MITgcm-checkpoint68i/pkg/thsice/thsice_diffusion.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_advect.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_exch.F MITgcm-checkpoint68i/pkg/thsice/thsice_extend.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_bulkf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_precip.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_velocity.F MITgcm-checkpoint68i/pkg/thsice/thsice_impl_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_ini_vars.F MITgcm-checkpoint68i/pkg/thsice/thsice_init_fixed.F MITgcm-checkpoint68i/pkg/thsice/thsice_main.F MITgcm-checkpoint68i/pkg/thsice/thsice_map_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_mnc_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_monitor.F MITgcm-checkpoint68i/pkg/thsice/thsice_output.F MITgcm-checkpoint68i/pkg/thsice/thsice_read_pickup.F MITgcm-checkpoint68i/pkg/thsice/thsice_readparms.F MITgcm-checkpoint68i/pkg/thsice/thsice_reshape_layers.F MITgcm-checkpoint68i/pkg/thsice/thsice_salt_plume.F MITgcm-checkpoint68i/pkg/thsice/thsice_slab_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_solve4temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_fwd.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_test_addfluid.h MITgcm-checkpoint68i/pkg/thsice/thsice_turnoff_io.F MITgcm-checkpoint68i/pkg/thsice/thsice_write_pickup.F MITgcm-checkpoint68i/pkg/timeave/ MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_OPTIONS.h MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_STATV.h MITgcm-checkpoint68i/pkg/timeave/timeave_ad_diff.list MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1k1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_dif_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumulate.F MITgcm-checkpoint68i/pkg/timeave/timeave_description.tex MITgcm-checkpoint68i/pkg/timeave/timeave_init_fixed.F MITgcm-checkpoint68i/pkg/timeave/timeave_norma_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_normalize.F MITgcm-checkpoint68i/pkg/timeave/timeave_reset.F MITgcm-checkpoint68i/pkg/timeave/timeave_statv_write.F MITgcm-checkpoint68i/pkg/timeave/timeave_statvars.F MITgcm-checkpoint68i/pkg/timeave/timeave_surf_flux.F MITgcm-checkpoint68i/pkg/zonal_filt/ MITgcm-checkpoint68i/pkg/zonal_filt/FFTPACK.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/zonal_filt/fftpack.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_ts.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_uv.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_init.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_nofill.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_postsmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_presmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_readparms.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filter.F MITgcm-checkpoint68i/tools/ MITgcm-checkpoint68i/tools/OAD_support/ MITgcm-checkpoint68i/tools/OAD_support/OAD_active.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_regular_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_rev.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_tape.F90 MITgcm-checkpoint68i/tools/OAD_support/ad_inline.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xyz.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_write_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.dummy_in_stepping.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rs.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_max_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_tile_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.regular.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.revolve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.sa_cg2d.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split_non_anonymous.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_cg_solve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_fp_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_invert_surf_forthick.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_smooth_adjoint_field.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_vel_phistage.F MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mUseModules.bash MITgcm-checkpoint68i/tools/OAD_support/dontCompile MITgcm-checkpoint68i/tools/OAD_support/dontTransform MITgcm-checkpoint68i/tools/OAD_support/fixData.sed MITgcm-checkpoint68i/tools/OAD_support/iaddr.c MITgcm-checkpoint68i/tools/OAD_support/insertTemplateDir.bash MITgcm-checkpoint68i/tools/OAD_support/keepOriginal MITgcm-checkpoint68i/tools/OAD_support/revolve.F90 MITgcm-checkpoint68i/tools/OAD_support/stop2print.sed MITgcm-checkpoint68i/tools/OAD_support/strip.sed MITgcm-checkpoint68i/tools/OAD_support/timeRatio.c MITgcm-checkpoint68i/tools/OAD_support/w2f__types.F90 MITgcm-checkpoint68i/tools/ad_taf_output.f.adtrick.diff MITgcm-checkpoint68i/tools/ad_taf_output.f.diva.diff_del1 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MITgcm-checkpoint68i/verification/vermix/input/Qnet_72.forcing MITgcm-checkpoint68i/verification/vermix/input/S.doublediff MITgcm-checkpoint68i/verification/vermix/input/S.init MITgcm-checkpoint68i/verification/vermix/input/T.doublediff MITgcm-checkpoint68i/verification/vermix/input/TKE.init MITgcm-checkpoint68i/verification/vermix/input/T_26.init MITgcm-checkpoint68i/verification/vermix/input/data MITgcm-checkpoint68i/verification/vermix/input/data.diagnostics MITgcm-checkpoint68i/verification/vermix/input/data.kpp MITgcm-checkpoint68i/verification/vermix/input/data.mnc MITgcm-checkpoint68i/verification/vermix/input/data.pkg MITgcm-checkpoint68i/verification/vermix/input/eedata MITgcm-checkpoint68i/verification/vermix/input/gendata.m MITgcm-checkpoint68i/verification/vermix/input/taux_72.forcing MITgcm-checkpoint68i/verification/vermix/input/tr_checklist MITgcm-checkpoint68i/verification/vermix/results/ MITgcm-checkpoint68i/verification/vermix/results/output.dd.txt MITgcm-checkpoint68i/verification/vermix/results/output.ggl90.txt MITgcm-checkpoint68i/verification/vermix/results/output.my82.txt MITgcm-checkpoint68i/verification/vermix/results/output.opps.txt MITgcm-checkpoint68i/verification/vermix/results/output.pp81.txt MITgcm-checkpoint68i/verification/vermix/results/output.txt MITgcm-checkpoint68i/verification/vermix/run/ MITgcm-checkpoint68i/verification/vermix/run/.gitignore [41;37m step #5: BuildMITgcm [0m GENMAKE : A program for GENerating MAKEfiles for the MITgcm project. For a quick list of options, use "genmake2 -h" or for more detail see the documentation, section "Building the model" (under "Getting Started") at: https://mitgcm.readthedocs.io/ === Processing options files and arguments === getting local config information: none found getting OPTFILE information: Warning: no OPTFILE specified so we'll look for possible settings === Searching for possible settings for OPTFILE === The platform appears to be: linux_amd64 The possible FORTRAN compilers found in your path are: gfortran f77 f95 mpif77 Setting OPTFILE to: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran using OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran" get Compiler-version: '12' getting AD_OPTFILE information: using AD_OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/adjoint_options/adjoint_default" check Fortran Compiler... pass (set FC_CHECK=5/5) check makedepend (local: 0, system: 1, 1) Turning on MPI cpp macros === Checking system libraries === Do we have the system() command using mpif77... yes Do we have the fdate() command using mpif77... yes Do we have the etime() command using mpif77... c,r: yes (SbR) Can we call simple C routines (here, "cloc()") using mpif77... yes Can we unlimit the stack size using mpif77... yes Can we register a signal handler using mpif77... yes Can we use stat() through C calls... yes Can we create NetCDF-enabled binaries... no skip check for LAPACK Libs Can we call FLUSH intrinsic subroutine... yes === Setting defaults === Adding MODS directories: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code Making source files in eesupp from templates Making source files in pkg/exch2 from templates Making source files in pkg/regrid from templates === Determining package settings === getting package dependency info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_depend getting package groups info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_groups checking list of packages to compile: using PKG_LIST="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/packages.conf" before group expansion packages are: gfd obcs shelfice diagnostics timeave replacing "gfd" with: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor after group expansion packages are: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor obcs shelfice diagnostics timeave applying DISABLE settings applying ENABLE settings packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave applying package dependency rules packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave Adding STANDARDDIRS='eesupp model' Searching for *OPTIONS.h files in order to warn about the presence of "#define "-type statements that are no longer allowed: found CPP_EEOPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h" found CPP_OPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h" Creating the list of files for the adjoint compiler. === Creating the Makefile === setting INCLUDES Determining the list of source and include files Writing makefile: Makefile Add the source list for AD code generation Making list of "exceptions" that need ".p" files Making list of NOOPTFILES Add rules for links Adding makedepend marker === Done === original 'Makefile' generated successfully => next steps: > make depend > make (<-- to generate executable) make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' if [ ! -L cpl_issm.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/cpl_issm.F cpl_issm.F; fi if [ ! -L do_oceanic_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/do_oceanic_phys.F do_oceanic_phys.F; fi if [ ! -L eeboot_minimal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eeboot_minimal.F eeboot_minimal.F; fi if [ ! -L eedie.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eedie.F eedie.F; fi if [ ! -L chksum_tiled.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/chksum_tiled.F chksum_tiled.F; fi if [ ! -L debug_call.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_call.F debug_call.F; fi if [ ! -L debug_cs_corner_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_cs_corner_uv.F debug_cs_corner_uv.F; fi if [ ! -L debug_enter.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_enter.F debug_enter.F; fi if [ ! -L debug_fld_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rl.F debug_fld_stats_rl.F; fi if [ ! -L debug_fld_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rs.F debug_fld_stats_rs.F; fi if [ ! -L debug_leave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_leave.F debug_leave.F; fi if [ ! -L debug_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_msg.F debug_msg.F; fi if [ ! -L debug_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rl.F debug_stats_rl.F; fi if [ ! -L debug_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rs.F debug_stats_rs.F; fi if [ ! -L fill_in_corners_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/fill_in_corners_rl.F fill_in_corners_rl.F; fi if [ ! -L write_fullarray_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rl.F write_fullarray_rl.F; fi if [ ! -L write_fullarray_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rs.F write_fullarray_rs.F; fi if [ ! -L diag_calc_psivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_calc_psivel.F diag_calc_psivel.F; fi if [ ! -L diag_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_cg2d.F diag_cg2d.F; fi if [ ! -L diagnostics_addtolist.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_addtolist.F diagnostics_addtolist.F; fi if [ ! -L diagnostics_calc_phivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_calc_phivel.F diagnostics_calc_phivel.F; fi if [ ! -L diagnostics_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_check.F diagnostics_check.F; fi if [ ! -L diagnostics_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_clear.F diagnostics_clear.F; fi if [ ! -L diagnostics_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill.F diagnostics_fill.F; fi if [ ! -L diagnostics_fill_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_field.F diagnostics_fill_field.F; fi if [ ! -L diagnostics_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_rs.F diagnostics_fill_rs.F; fi if [ ! -L diagnostics_fill_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_state.F diagnostics_fill_state.F; fi if [ ! -L diagnostics_fract_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fract_fill.F diagnostics_fract_fill.F; fi if [ ! -L diagnostics_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_ini_io.F diagnostics_ini_io.F; fi if [ ! -L diagnostics_init_early.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_early.F diagnostics_init_early.F; fi if [ ! -L diagnostics_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_fixed.F diagnostics_init_fixed.F; fi if [ ! -L diagnostics_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_varia.F diagnostics_init_varia.F; fi if [ ! -L diagnostics_interp_p2p.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_p2p.F diagnostics_interp_p2p.F; fi if [ ! -L diagnostics_interp_vert.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_vert.F diagnostics_interp_vert.F; fi if [ ! -L diagnostics_is_on.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_is_on.F diagnostics_is_on.F; fi if [ ! -L diagnostics_list_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_list_check.F diagnostics_list_check.F; fi if [ ! -L diagnostics_main_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_main_init.F diagnostics_main_init.F; fi if [ ! -L diagnostics_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_mnc_out.F diagnostics_mnc_out.F; fi if [ ! -L diagnostics_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_out.F diagnostics_out.F; fi if [ ! -L diagnostics_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_readparms.F diagnostics_readparms.F; fi if [ ! -L diagnostics_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_read_pickup.F diagnostics_read_pickup.F; fi if [ ! -L diagnostics_scale_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill.F diagnostics_scale_fill.F; fi if [ ! -L diagnostics_scale_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill_rs.F diagnostics_scale_fill_rs.F; fi if [ ! -L diagnostics_set_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_calc.F diagnostics_set_calc.F; fi if [ ! -L diagnostics_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_setdiag.F diagnostics_setdiag.F; fi if [ ! -L diagnostics_set_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_levels.F diagnostics_set_levels.F; fi if [ ! -L diagnostics_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_pointers.F diagnostics_set_pointers.F; fi if [ ! -L diagnostics_status_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_status_error.F diagnostics_status_error.F; fi if [ ! -L diagnostics_sum_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_sum_levels.F diagnostics_sum_levels.F; fi if [ ! -L diagnostics_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_summary.F diagnostics_summary.F; fi if [ ! -L diagnostics_switch_onoff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_switch_onoff.F diagnostics_switch_onoff.F; fi if [ ! -L diagnostics_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_utils.F diagnostics_utils.F; fi if [ ! -L diagnostics_write_adj.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_adj.F diagnostics_write_adj.F; fi if [ ! -L diagnostics_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write.F diagnostics_write.F; fi if [ ! -L diagnostics_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_pickup.F diagnostics_write_pickup.F; fi if [ ! -L diagstats_ascii_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ascii_out.F diagstats_ascii_out.F; fi if [ ! -L diagstats_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_calc.F diagstats_calc.F; fi if [ ! -L diagstats_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_clear.F diagstats_clear.F; fi if [ ! -L diagstats_close_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_close_io.F diagstats_close_io.F; fi if [ ! -L diagstats_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_fill.F diagstats_fill.F; fi if [ ! -L diagstats_global.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_global.F diagstats_global.F; fi if [ ! -L diagstats_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ini_io.F diagstats_ini_io.F; fi if [ ! -L diagstats_local.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_local.F diagstats_local.F; fi if [ ! -L diagstats_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_mnc_out.F diagstats_mnc_out.F; fi if [ ! -L diagstats_others_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_others_calc.F diagstats_others_calc.F; fi if [ ! -L diagstats_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_output.F diagstats_output.F; fi if [ ! -L diagstats_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_setdiag.F diagstats_setdiag.F; fi if [ ! -L diagstats_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_pointers.F diagstats_set_pointers.F; fi if [ ! -L diagstats_set_regions.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_regions.F diagstats_set_regions.F; fi if [ ! -L diag_vegtile_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_vegtile_fill.F diag_vegtile_fill.F; fi if [ ! -L gad_advection.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advection.F gad_advection.F; fi if [ ! -L gad_advscheme.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advscheme.F gad_advscheme.F; fi if [ ! -L gad_biharm_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_r.F gad_biharm_r.F; fi if [ ! -L gad_biharm_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_x.F gad_biharm_x.F; fi if [ ! -L gad_biharm_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_y.F gad_biharm_y.F; fi if [ ! -L gad_c2_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_r.F gad_c2_adv_r.F; fi if [ ! -L gad_c2_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_x.F gad_c2_adv_x.F; fi if [ ! -L gad_c2_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_y.F gad_c2_adv_y.F; fi if [ ! -L gad_c2_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_impl_r.F gad_c2_impl_r.F; fi if [ ! -L gad_c4_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_r.F gad_c4_adv_r.F; fi if [ ! -L gad_c4_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_x.F gad_c4_adv_x.F; fi if [ ! -L gad_c4_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_y.F gad_c4_adv_y.F; fi if [ ! -L gad_calc_rhs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_calc_rhs.F gad_calc_rhs.F; fi if [ ! -L gad_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_check.F gad_check.F; fi if [ ! -L gad_del2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_del2.F gad_del2.F; fi if [ ! -L gad_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_init.F gad_diagnostics_init.F; fi if [ ! -L gad_diagnostics_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_state.F gad_diagnostics_state.F; fi if [ ! -L gad_diff_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_r.F gad_diff_r.F; fi if [ ! -L gad_diff_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_x.F gad_diff_x.F; fi if [ ! -L gad_diff_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_y.F gad_diff_y.F; fi if [ ! -L gad_dst2u1_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_r.F gad_dst2u1_adv_r.F; fi if [ ! -L gad_dst2u1_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_x.F gad_dst2u1_adv_x.F; fi if [ ! -L gad_dst2u1_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_y.F gad_dst2u1_adv_y.F; fi if [ ! -L gad_dst2u1_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_impl_r.F gad_dst2u1_impl_r.F; fi if [ ! -L gad_dst3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_r.F gad_dst3_adv_r.F; fi if [ ! -L gad_dst3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_x.F gad_dst3_adv_x.F; fi if [ ! -L gad_dst3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_y.F gad_dst3_adv_y.F; fi if [ ! -L gad_dst3fl_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_r.F gad_dst3fl_adv_r.F; fi if [ ! -L gad_dst3fl_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_x.F gad_dst3fl_adv_x.F; fi if [ ! -L gad_dst3fl_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_y.F gad_dst3fl_adv_y.F; fi if [ ! -L gad_dst3fl_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_impl_r.F gad_dst3fl_impl_r.F; fi if [ ! -L gad_exch_som.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_exch_som.F gad_exch_som.F; fi if [ ! -L gad_fluxlimit_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_r.F gad_fluxlimit_adv_r.F; fi if [ ! -L gad_fluxlimit_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_x.F gad_fluxlimit_adv_x.F; fi if [ ! -L gad_fluxlimit_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_y.F gad_fluxlimit_adv_y.F; fi if [ ! -L gad_fluxlimit_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_impl_r.F gad_fluxlimit_impl_r.F; fi if [ ! -L gad_grad_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_x.F gad_grad_x.F; fi if [ ! -L gad_grad_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_y.F gad_grad_y.F; fi if [ ! -L gad_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_implicit_r.F gad_implicit_r.F; fi if [ ! -L gad_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_fixed.F gad_init_fixed.F; fi if [ ! -L gad_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_varia.F gad_init_varia.F; fi if [ ! -L gad_os7mp_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_r.F gad_os7mp_adv_r.F; fi if [ ! -L gad_os7mp_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_x.F gad_os7mp_adv_x.F; fi if [ ! -L gad_os7mp_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_y.F gad_os7mp_adv_y.F; fi if [ ! -L gad_osc_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_r.F gad_osc_hat_r.F; fi if [ ! -L gad_osc_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_x.F gad_osc_hat_x.F; fi if [ ! -L gad_osc_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_y.F gad_osc_hat_y.F; fi if [ ! -L gad_osc_mul_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_r.F gad_osc_mul_r.F; fi if [ ! -L gad_osc_mul_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_x.F gad_osc_mul_x.F; fi if [ ! -L gad_osc_mul_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_y.F gad_osc_mul_y.F; fi if [ ! -L gad_plm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_plm_fun.F gad_plm_fun.F; fi if [ ! -L gad_ppm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_r.F gad_ppm_adv_r.F; fi if [ ! -L gad_ppm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_x.F gad_ppm_adv_x.F; fi if [ ! -L gad_ppm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_y.F gad_ppm_adv_y.F; fi if [ ! -L gad_ppm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_r.F gad_ppm_flx_r.F; fi if [ ! -L gad_ppm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_x.F gad_ppm_flx_x.F; fi if [ ! -L gad_ppm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_y.F gad_ppm_flx_y.F; fi if [ ! -L gad_ppm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_fun.F gad_ppm_fun.F; fi if [ ! -L gad_ppm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_r.F gad_ppm_hat_r.F; fi if [ ! -L gad_ppm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_x.F gad_ppm_hat_x.F; fi if [ ! -L gad_ppm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_y.F gad_ppm_hat_y.F; fi if [ ! -L gad_ppm_p3e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_r.F gad_ppm_p3e_r.F; fi if [ ! -L gad_ppm_p3e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_x.F gad_ppm_p3e_x.F; fi if [ ! -L gad_ppm_p3e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_y.F gad_ppm_p3e_y.F; fi if [ ! -L gad_pqm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_r.F gad_pqm_adv_r.F; fi if [ ! -L gad_pqm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_x.F gad_pqm_adv_x.F; fi if [ ! -L gad_pqm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_y.F gad_pqm_adv_y.F; fi if [ ! -L gad_pqm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_r.F gad_pqm_flx_r.F; fi if [ ! -L gad_pqm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_x.F gad_pqm_flx_x.F; fi if [ ! -L gad_pqm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_y.F gad_pqm_flx_y.F; fi if [ ! -L gad_pqm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_fun.F gad_pqm_fun.F; fi if [ ! -L gad_pqm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_r.F gad_pqm_hat_r.F; fi if [ ! -L gad_pqm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_x.F gad_pqm_hat_x.F; fi if [ ! -L gad_pqm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_y.F gad_pqm_hat_y.F; fi if [ ! -L gad_pqm_p5e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_r.F gad_pqm_p5e_r.F; fi if [ ! -L gad_pqm_p5e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_x.F gad_pqm_p5e_x.F; fi if [ ! -L gad_pqm_p5e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_y.F gad_pqm_p5e_y.F; fi if [ ! -L gad_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_read_pickup.F gad_read_pickup.F; fi if [ ! -L gad_som_advect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_advect.F gad_som_advect.F; fi if [ ! -L gad_som_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_r.F gad_som_adv_r.F; fi if [ ! -L gad_som_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_x.F gad_som_adv_x.F; fi if [ ! -L gad_som_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_y.F gad_som_adv_y.F; fi if [ ! -L gad_som_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_exchanges.F gad_som_exchanges.F; fi if [ ! -L gad_som_fill_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_fill_cs_corner.F gad_som_fill_cs_corner.F; fi if [ ! -L gad_som_lim_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_lim_r.F gad_som_lim_r.F; fi if [ ! -L gad_som_prep_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_prep_cs_corner.F gad_som_prep_cs_corner.F; fi if [ ! -L gad_u3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_r.F gad_u3_adv_r.F; fi if [ ! -L gad_u3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_x.F gad_u3_adv_x.F; fi if [ ! -L gad_u3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_y.F gad_u3_adv_y.F; fi if [ ! -L gad_u3c4_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3c4_impl_r.F gad_u3c4_impl_r.F; fi if [ ! -L gad_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_write_pickup.F gad_write_pickup.F; fi if [ ! -L salt_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/salt_fill.F salt_fill.F; fi if [ ! -L mdsio_buffertorl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertorl.F mdsio_buffertorl.F; fi if [ ! -L mdsio_buffertors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertors.F mdsio_buffertors.F; fi if [ ! -L mdsio_check4file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_check4file.F mdsio_check4file.F; fi if [ ! -L mdsio_facef_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_facef_read.F mdsio_facef_read.F; fi if [ ! -L mdsio_gl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl.F mdsio_gl.F; fi if [ ! -L mdsio_gl_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl_slice.F mdsio_gl_slice.F; fi if [ ! -L mdsio_pass_r4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4torl.F mdsio_pass_r4torl.F; fi if [ ! -L mdsio_pass_r4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4tors.F mdsio_pass_r4tors.F; fi if [ ! -L mdsio_pass_r8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8torl.F mdsio_pass_r8torl.F; fi if [ ! -L mdsio_pass_r8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8tors.F mdsio_pass_r8tors.F; fi if [ ! -L mdsio_rd_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rl.F mdsio_rd_rec_rl.F; fi if [ ! -L mdsio_rd_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rs.F mdsio_rd_rec_rs.F; fi if [ ! -L mdsio_read_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_field.F mdsio_read_field.F; fi if [ ! -L mdsio_read_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_meta.F mdsio_read_meta.F; fi if [ ! -L mdsio_read_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_section.F mdsio_read_section.F; fi if [ ! -L mdsio_read_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_tape.F mdsio_read_tape.F; fi if [ ! -L mdsio_readvec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_readvec_loc.F mdsio_readvec_loc.F; fi if [ ! -L mdsio_read_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_whalos.F mdsio_read_whalos.F; fi if [ ! -L mdsio_rw_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_field.F mdsio_rw_field.F; fi if [ ! -L mdsio_rw_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_slice.F mdsio_rw_slice.F; fi if [ ! -L mdsio_seg4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4torl.F mdsio_seg4torl.F; fi if [ ! -L mdsio_seg4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4tors.F mdsio_seg4tors.F; fi if [ ! -L mdsio_seg8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8torl.F mdsio_seg8torl.F; fi if [ ! -L mdsio_seg8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8tors.F mdsio_seg8tors.F; fi if [ ! -L mdsio_segxtorx_2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_segxtorx_2d.F mdsio_segxtorx_2d.F; fi if [ ! -L mdsio_write_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_field.F mdsio_write_field.F; fi if [ ! -L mdsio_writelocal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writelocal.F mdsio_writelocal.F; fi if [ ! -L mdsio_write_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_meta.F mdsio_write_meta.F; fi if [ ! -L mdsio_write_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_section.F mdsio_write_section.F; fi if [ ! -L mdsio_write_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_tape.F mdsio_write_tape.F; fi if [ ! -L mdsio_writevec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writevec_loc.F mdsio_writevec_loc.F; fi if [ ! -L mdsio_write_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_whalos.F mdsio_write_whalos.F; fi if [ ! -L mdsio_wr_metafiles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_metafiles.F mdsio_wr_metafiles.F; fi if [ ! -L mdsio_wr_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rl.F mdsio_wr_rec_rl.F; fi if [ ! -L mdsio_wr_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rs.F mdsio_wr_rec_rs.F; fi if [ ! -L mom_calc_3d_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_3d_strain.F mom_calc_3d_strain.F; fi if [ ! -L mom_calc_absvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_absvort3.F mom_calc_absvort3.F; fi if [ ! -L mom_calc_hdiv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hdiv.F mom_calc_hdiv.F; fi if [ ! -L mom_calc_hfacz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hfacz.F mom_calc_hfacz.F; fi if [ ! -L mom_calc_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_ke.F mom_calc_ke.F; fi if [ ! -L mom_calc_relvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_relvort3.F mom_calc_relvort3.F; fi if [ ! -L mom_calc_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_smag_3d.F mom_calc_smag_3d.F; fi if [ ! -L mom_calc_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_strain.F mom_calc_strain.F; fi if [ ! -L mom_calc_tension.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_tension.F mom_calc_tension.F; fi if [ ! -L mom_calc_visc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_visc.F mom_calc_visc.F; fi if [ ! -L mom_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_diagnostics_init.F mom_diagnostics_init.F; fi if [ ! -L mom_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_hdissip.F mom_hdissip.F; fi if [ ! -L mom_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_init_fixed.F mom_init_fixed.F; fi if [ ! -L mom_quasihydrostatic.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_quasihydrostatic.F mom_quasihydrostatic.F; fi if [ ! -L mom_u_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_botdrag_coeff.F mom_u_botdrag_coeff.F; fi if [ ! -L mom_u_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_coriolis_nh.F mom_u_coriolis_nh.F; fi if [ ! -L mom_u_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_implicit_r.F mom_u_implicit_r.F; fi if [ ! -L mom_u_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_metric_nh.F mom_u_metric_nh.F; fi if [ ! -L mom_u_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_rviscflux.F mom_u_rviscflux.F; fi if [ ! -L mom_u_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_sidedrag.F mom_u_sidedrag.F; fi if [ ! -L mom_uv_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_uv_smag_3d.F mom_uv_smag_3d.F; fi if [ ! -L mom_v_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_botdrag_coeff.F mom_v_botdrag_coeff.F; fi if [ ! -L mom_v_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_coriolis_nh.F mom_v_coriolis_nh.F; fi if [ ! -L mom_v_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_implicit_r.F mom_v_implicit_r.F; fi if [ ! -L mom_visc_qgl_limit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_limit.F mom_visc_qgl_limit.F; fi if [ ! -L mom_visc_qgl_stretch.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_stretch.F mom_visc_qgl_stretch.F; fi if [ ! -L mom_v_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_metric_nh.F mom_v_metric_nh.F; fi if [ ! -L mom_v_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_rviscflux.F mom_v_rviscflux.F; fi if [ ! -L mom_v_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_sidedrag.F mom_v_sidedrag.F; fi if [ ! -L mom_w_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_coriolis_nh.F mom_w_coriolis_nh.F; fi if [ ! -L mom_w_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_metric_nh.F mom_w_metric_nh.F; fi if [ ! -L mom_w_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_sidedrag.F mom_w_sidedrag.F; fi if [ ! -L mom_w_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_smag_3d.F mom_w_smag_3d.F; fi if [ ! -L mom_calc_rtrans.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_calc_rtrans.F mom_calc_rtrans.F; fi if [ ! -L mom_fluxform.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_fluxform.F mom_fluxform.F; fi if [ ! -L mom_u_adv_uu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_uu.F mom_u_adv_uu.F; fi if [ ! -L mom_u_adv_vu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_vu.F mom_u_adv_vu.F; fi if [ ! -L mom_u_adv_wu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_wu.F mom_u_adv_wu.F; fi if [ ! -L mom_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_coriolis.F mom_u_coriolis.F; fi if [ ! -L mom_u_del2u.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_del2u.F mom_u_del2u.F; fi if [ ! -L mom_u_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_cylinder.F mom_u_metric_cylinder.F; fi if [ ! -L mom_u_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_sphere.F mom_u_metric_sphere.F; fi if [ ! -L mom_uv_boundary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_uv_boundary.F mom_uv_boundary.F; fi if [ ! -L mom_u_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_xviscflux.F mom_u_xviscflux.F; fi if [ ! -L mom_u_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_yviscflux.F mom_u_yviscflux.F; fi if [ ! -L mom_v_adv_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_uv.F mom_v_adv_uv.F; fi if [ ! -L mom_v_adv_vv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_vv.F mom_v_adv_vv.F; fi if [ ! -L mom_v_adv_wv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_wv.F mom_v_adv_wv.F; fi if [ ! -L mom_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_coriolis.F mom_v_coriolis.F; fi if [ ! -L mom_v_del2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_del2v.F mom_v_del2v.F; fi if [ ! -L mom_v_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_cylinder.F mom_v_metric_cylinder.F; fi if [ ! -L mom_v_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_sphere.F mom_v_metric_sphere.F; fi if [ ! -L mom_v_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_xviscflux.F mom_v_xviscflux.F; fi if [ ! -L mom_v_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_yviscflux.F mom_v_yviscflux.F; fi if [ ! -L mom_vecinv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vecinv.F mom_vecinv.F; fi if [ ! -L mom_vi_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_coriolis.F mom_vi_coriolis.F; fi if [ ! -L mom_vi_del2uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_del2uv.F mom_vi_del2uv.F; fi if [ ! -L mom_vi_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_hdissip.F mom_vi_hdissip.F; fi if [ ! -L mom_vi_u_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F mom_vi_u_coriolis_c4.F; fi if [ ! -L mom_vi_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis.F mom_vi_u_coriolis.F; fi if [ ! -L mom_vi_u_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_grad_ke.F mom_vi_u_grad_ke.F; fi if [ ! -L mom_vi_u_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_vertshear.F mom_vi_u_vertshear.F; fi if [ ! -L mom_vi_v_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F mom_vi_v_coriolis_c4.F; fi if [ ! -L mom_vi_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis.F mom_vi_v_coriolis.F; fi if [ ! -L mom_vi_v_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_grad_ke.F mom_vi_v_grad_ke.F; fi if [ ! -L mom_vi_v_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_vertshear.F mom_vi_v_vertshear.F; fi if [ ! -L mon_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcfl.F mon_advcfl.F; fi if [ ! -L mon_advcflw2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw2.F mon_advcflw2.F; fi if [ ! -L mon_advcflw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw.F mon_advcflw.F; fi if [ ! -L mon_calc_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_advcfl.F mon_calc_advcfl.F; fi if [ ! -L mon_calc_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rl.F mon_calc_stats_rl.F; fi if [ ! -L mon_calc_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rs.F mon_calc_stats_rs.F; fi if [ ! -L mon_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_init.F mon_init.F; fi if [ ! -L monitor_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_ad.F monitor_ad.F; fi if [ ! -L monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor.F monitor.F; fi if [ ! -L monitor_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_g.F monitor_g.F; fi if [ ! -L mon_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_ke.F mon_ke.F; fi if [ ! -L mon_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_out.F mon_out.F; fi if [ ! -L mon_printstats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rl.F mon_printstats_rl.F; fi if [ ! -L mon_printstats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rs.F mon_printstats_rs.F; fi if [ ! -L mon_set_iounit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_iounit.F mon_set_iounit.F; fi if [ ! -L mon_set_pref.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_pref.F mon_set_pref.F; fi if [ ! -L mon_solution.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_solution.F mon_solution.F; fi if [ ! -L mon_stats_latbnd_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_latbnd_rl.F mon_stats_latbnd_rl.F; fi if [ ! -L mon_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rl.F mon_stats_rl.F; fi if [ ! -L mon_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rs.F mon_stats_rs.F; fi if [ ! -L mon_surfcor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_surfcor.F mon_surfcor.F; fi if [ ! -L mon_vort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_vort3.F mon_vort3.F; fi if [ ! -L mon_writestats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rl.F mon_writestats_rl.F; fi if [ ! -L mon_writestats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rs.F mon_writestats_rs.F; fi if [ ! -L obcs_add_tides.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_add_tides.F obcs_add_tides.F; fi if [ ! -L obcs_adjust.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust.F obcs_adjust.F; fi if [ ! -L obcs_adjust_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust_uvice.F obcs_adjust_uvice.F; fi if [ ! -L obcs_apply_eta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_eta.F obcs_apply_eta.F; fi if [ ! -L obcs_apply_ptracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ptracer.F obcs_apply_ptracer.F; fi if [ ! -L obcs_apply_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_r_star.F obcs_apply_r_star.F; fi if [ ! -L obcs_apply_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_seaice.F obcs_apply_seaice.F; fi if [ ! -L obcs_apply_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_surf_dr.F obcs_apply_surf_dr.F; fi if [ ! -L obcs_apply_ts.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ts.F obcs_apply_ts.F; fi if [ ! -L obcs_apply_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uv.F obcs_apply_uv.F; fi if [ ! -L obcs_apply_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uvice.F obcs_apply_uvice.F; fi if [ ! -L obcs_apply_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_w.F obcs_apply_w.F; fi if [ ! -L obcs_balance_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_balance_flow.F obcs_balance_flow.F; fi if [ ! -L obcs_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc.F obcs_calc.F; fi if [ ! -L obcs_calc_stevens.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc_stevens.F obcs_calc_stevens.F; fi if [ ! -L obcs_check_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check_depths.F obcs_check_depths.F; fi if [ ! -L obcs_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check.F obcs_check.F; fi if [ ! -L obcs_copy_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_tracer.F obcs_copy_tracer.F; fi if [ ! -L obcs_copy_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_uv_n.F obcs_copy_uv_n.F; fi if [ ! -L obcs_diag_balance.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_diag_balance.F obcs_diag_balance.F; fi if [ ! -L obcs_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exchanges.F obcs_exchanges.F; fi if [ ! -L obcs_exf_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exf_load.F obcs_exf_load.F; fi if [ ! -L obcs_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_fields_load.F obcs_fields_load.F; fi if [ ! -L obcs_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_fixed.F obcs_init_fixed.F; fi if [ ! -L obcs_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_variables.F obcs_init_variables.F; fi if [ ! -L obcs_monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_monitor.F obcs_monitor.F; fi if [ ! -L obcs_mon_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_mon_stats.F obcs_mon_stats.F; fi if [ ! -L obcs_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_output.F obcs_output.F; fi if [ ! -L obcs_prescribe_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_prescribe_read.F obcs_prescribe_read.F; fi if [ ! -L obcs_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_readparms.F obcs_readparms.F; fi if [ ! -L obcs_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_read_pickup.F obcs_read_pickup.F; fi if [ ! -L obcs_save_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_save_uv_n.F obcs_save_uv_n.F; fi if [ ! -L obcs_seaice_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_seaice_sponge.F obcs_seaice_sponge.F; fi if [ ! -L obcs_set_connect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_set_connect.F obcs_set_connect.F; fi if [ ! -L obcs_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_sponge.F obcs_sponge.F; fi if [ ! -L obcs_u1_adv_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_u1_adv_tracer.F obcs_u1_adv_tracer.F; fi if [ ! -L obcs_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_write_pickup.F obcs_write_pickup.F; fi if [ ! -L orlanski_east.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_east.F orlanski_east.F; fi if [ ! -L orlanski_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_init.F orlanski_init.F; fi if [ ! -L orlanski_north.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_north.F orlanski_north.F; fi if [ ! -L orlanski_south.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_south.F orlanski_south.F; fi if [ ! -L orlanski_west.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_west.F orlanski_west.F; fi if [ ! -L get_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/get_write_global_fld.F get_write_global_fld.F; fi if [ ! -L read_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rl.F read_fld_xy_rl.F; fi if [ ! -L read_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rs.F read_fld_xy_rs.F; fi if [ ! -L read_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rl.F read_fld_xyz_rl.F; fi if [ ! -L read_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rs.F read_fld_xyz_rs.F; fi if [ ! -L read_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rl.F read_glvec_rl.F; fi if [ ! -L read_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rs.F read_glvec_rs.F; fi if [ ! -L read_mflds.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_mflds.F read_mflds.F; fi if [ ! -L read_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_rec.F read_rec.F; fi if [ ! -L rw_get_suffix.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/rw_get_suffix.F rw_get_suffix.F; fi if [ ! -L set_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/set_write_global_fld.F set_write_global_fld.F; fi if [ ! -L write_fld_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rl.F write_fld_3d_rl.F; fi if [ ! -L write_fld_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rs.F write_fld_3d_rs.F; fi if [ ! -L write_fld_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rl.F write_fld_s3d_rl.F; fi if [ ! -L write_fld_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rs.F write_fld_s3d_rs.F; fi if [ ! -L write_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rl.F write_fld_xy_rl.F; fi if [ ! -L write_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rs.F write_fld_xy_rs.F; fi if [ ! -L write_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rl.F write_fld_xyz_rl.F; fi if [ ! -L write_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rs.F write_fld_xyz_rs.F; fi if [ ! -L write_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rl.F write_glvec_rl.F; fi if [ ! -L write_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rs.F write_glvec_rs.F; fi if [ ! -L write_local_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rl.F write_local_rl.F; fi if [ ! -L write_local_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rs.F write_local_rs.F; fi if [ ! -L write_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_rec.F write_rec.F; fi if [ ! -L shelfice_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_check.F shelfice_check.F; fi if [ ! -L shelfice_cost_accumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_accumulate.F shelfice_cost_accumulate.F; fi if [ ! -L shelfice_cost_final.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_final.F shelfice_cost_final.F; fi if [ ! -L shelfice_cost_shifwflx.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_shifwflx.F shelfice_cost_shifwflx.F; fi if [ ! -L shelfice_diagnostics_drag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_diagnostics_drag.F shelfice_diagnostics_drag.F; fi if [ ! -L shelfice_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing.F shelfice_forcing.F; fi if [ ! -L shelfice_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing_surf.F shelfice_forcing_surf.F; fi if [ ! -L shelfice_init_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_depths.F shelfice_init_depths.F; fi if [ ! -L shelfice_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_fixed.F shelfice_init_fixed.F; fi if [ ! -L shelfice_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_varia.F shelfice_init_varia.F; fi if [ ! -L shelfice_mask_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mask_seaice.F shelfice_mask_seaice.F; fi if [ ! -L shelfice_mnc_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mnc_init.F shelfice_mnc_init.F; fi if [ ! -L shelfice_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_output.F shelfice_output.F; fi if [ ! -L shelfice_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_readparms.F shelfice_readparms.F; fi if [ ! -L shelfice_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_read_pickup.F shelfice_read_pickup.F; fi if [ ! -L shelfice_remesh_calc_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_calc_w.F shelfice_remesh_calc_w.F; fi if [ ! -L shelfice_remesh_c_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_c_mask.F shelfice_remesh_c_mask.F; fi if [ ! -L shelfice_remeshing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remeshing.F shelfice_remeshing.F; fi if [ ! -L shelfice_remesh_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_state.F shelfice_remesh_state.F; fi if [ ! -L shelfice_remesh_uv_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_uv_mask.F shelfice_remesh_uv_mask.F; fi if [ ! -L shelfice_step_icemass.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_step_icemass.F shelfice_step_icemass.F; fi if [ ! -L shelfice_thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_thermodynamics.F shelfice_thermodynamics.F; fi if [ ! -L shelfice_u_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_u_drag_coeff.F shelfice_u_drag_coeff.F; fi if [ ! -L shelfice_v_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_v_drag_coeff.F shelfice_v_drag_coeff.F; fi if [ ! -L shelfice_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_write_pickup.F shelfice_write_pickup.F; fi if [ ! -L timeave_cumul_1k1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1k1t.F timeave_cumul_1k1t.F; fi if [ ! -L timeave_cumul_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1t.F timeave_cumul_1t.F; fi if [ ! -L timeave_cumul_1vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1vfc.F timeave_cumul_1vfc.F; fi if [ ! -L timeave_cumul_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2v.F timeave_cumul_2v.F; fi if [ ! -L timeave_cumul_2vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2vfc.F timeave_cumul_2vfc.F; fi if [ ! -L timeave_cumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumulate.F timeave_cumulate.F; fi if [ ! -L timeave_cumul_dif_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_dif_1t.F timeave_cumul_dif_1t.F; fi if [ ! -L timeave_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_init_fixed.F timeave_init_fixed.F; fi if [ ! -L timeave_norma_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_norma_2v.F timeave_norma_2v.F; fi if [ ! -L timeave_normalize.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_normalize.F timeave_normalize.F; fi if [ ! -L timeave_reset.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_reset.F timeave_reset.F; fi if [ ! -L timeave_statvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statvars.F timeave_statvars.F; fi if [ ! -L timeave_statv_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statv_write.F timeave_statv_write.F; fi if [ ! -L timeave_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_surf_flux.F timeave_surf_flux.F; fi if [ ! -L all_proc_die.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/all_proc_die.F all_proc_die.F; fi if [ ! -L bar2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar2.F bar2.F; fi if [ ! -L bar_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar_check.F bar_check.F; fi if [ ! -L barrier.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/barrier.F barrier.F; fi if [ ! -L check_threads.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/check_threads.F check_threads.F; fi if [ ! -L comm_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/comm_stats.F comm_stats.F; fi if [ ! -L cumulsum_z_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/cumulsum_z_tile.F cumulsum_z_tile.F; fi if [ ! -L different_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/different_multiple.F different_multiple.F; fi if [ ! -L diff_phase_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/diff_phase_multiple.F diff_phase_multiple.F; fi if [ ! -L eeboot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeboot.F eeboot.F; fi if [ ! -L eedata_example.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eedata_example.F eedata_example.F; fi if [ ! -L eeintro_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeintro_msg.F eeintro_msg.F; fi if [ ! -L eeset_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeset_parms.F eeset_parms.F; fi if [ ! -L eewrite_eeenv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eewrite_eeenv.F eewrite_eeenv.F; fi if [ ! -L exch0_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r4.F exch0_r4.F; fi if [ ! -L exch0_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r8.F exch0_r8.F; fi if [ ! -L exch0_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rl.F exch0_rl.F; fi if [ ! -L exch0_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rs.F exch0_rs.F; fi if [ ! -L exch1_bg_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r4_cube.F exch1_bg_r4_cube.F; fi if [ ! -L exch1_bg_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r8_cube.F exch1_bg_r8_cube.F; fi if [ ! -L exch1_bg_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rl_cube.F exch1_bg_rl_cube.F; fi if [ ! -L exch1_bg_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rs_cube.F exch1_bg_rs_cube.F; fi if [ ! -L exch1_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4_cube.F exch1_r4_cube.F; fi if [ ! -L exch1_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4.F exch1_r4.F; fi if [ ! -L exch1_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8_cube.F exch1_r8_cube.F; fi if [ ! -L exch1_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8.F exch1_r8.F; fi if [ ! -L exch1_rl_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_ad.F exch1_rl_ad.F; fi if [ ! -L exch1_rl_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube_ad.F exch1_rl_cube_ad.F; fi if [ ! -L exch1_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube.F exch1_rl_cube.F; fi if [ ! -L exch1_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl.F exch1_rl.F; fi if [ ! -L exch1_rs_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_ad.F exch1_rs_ad.F; fi if [ ! -L exch1_rs_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube_ad.F exch1_rs_cube_ad.F; fi if [ ! -L exch1_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube.F exch1_rs_cube.F; fi if [ ! -L exch1_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs.F exch1_rs.F; fi if [ ! -L exch1_uv_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r4_cube.F exch1_uv_r4_cube.F; fi if [ ! -L exch1_uv_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r8_cube.F exch1_uv_r8_cube.F; fi if [ ! -L exch1_uv_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rl_cube.F exch1_uv_rl_cube.F; fi if [ ! -L exch1_uv_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rs_cube.F exch1_uv_rs_cube.F; fi if [ ! -L exch1_z_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r4_cube.F exch1_z_r4_cube.F; fi if [ ! -L exch1_z_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r8_cube.F exch1_z_r8_cube.F; fi if [ ! -L exch1_z_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rl_cube.F exch1_z_rl_cube.F; fi if [ ! -L exch1_z_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rs_cube.F exch1_z_rs_cube.F; fi if [ ! -L exch_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r4.F exch_3d_r4.F; fi if [ ! -L exch_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r8.F exch_3d_r8.F; fi if [ ! -L exch_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rl.F exch_3d_rl.F; fi if [ ! -L exch_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rs.F exch_3d_rs.F; fi if [ ! -L exch_cycle_ebl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_cycle_ebl.F exch_cycle_ebl.F; fi if [ ! -L exch_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_init.F exch_init.F; fi if [ ! -L exch_r4_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_x.F exch_r4_recv_get_x.F; fi if [ ! -L exch_r4_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_y.F exch_r4_recv_get_y.F; fi if [ ! -L exch_r4_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_x.F exch_r4_send_put_x.F; fi if [ ! -L exch_r4_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_y.F exch_r4_send_put_y.F; fi if [ ! -L exch_r8_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_x.F exch_r8_recv_get_x.F; fi if [ ! -L exch_r8_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_y.F exch_r8_recv_get_y.F; fi if [ ! -L exch_r8_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_x.F exch_r8_send_put_x.F; fi if [ ! -L exch_r8_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_y.F exch_r8_send_put_y.F; fi if [ ! -L exch_rl_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_x.F exch_rl_recv_get_x.F; fi if [ ! -L exch_rl_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_y.F exch_rl_recv_get_y.F; fi if [ ! -L exch_rl_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_x.F exch_rl_send_put_x.F; fi if [ ! -L exch_rl_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_y.F exch_rl_send_put_y.F; fi if [ ! -L exch_rs_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_x.F exch_rs_recv_get_x.F; fi if [ ! -L exch_rs_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_y.F exch_rs_recv_get_y.F; fi if [ ! -L exch_rs_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_x.F exch_rs_send_put_x.F; fi if [ ! -L exch_rs_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_y.F exch_rs_send_put_y.F; fi if [ ! -L exch_s3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r4.F exch_s3d_r4.F; fi if [ ! -L exch_s3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r8.F exch_s3d_r8.F; fi if [ ! -L exch_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rl.F exch_s3d_rl.F; fi if [ ! -L exch_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rs.F exch_s3d_rs.F; fi if [ ! -L exch_sm_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r4.F exch_sm_3d_r4.F; fi if [ ! -L exch_sm_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r8.F exch_sm_3d_r8.F; fi if [ ! -L exch_sm_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rl.F exch_sm_3d_rl.F; fi if [ ! -L exch_sm_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rs.F exch_sm_3d_rs.F; fi if [ ! -L exch_uv_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r4.F exch_uv_3d_r4.F; fi if [ ! -L exch_uv_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r8.F exch_uv_3d_r8.F; fi if [ ! -L exch_uv_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rl.F exch_uv_3d_rl.F; fi if [ ! -L exch_uv_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rs.F exch_uv_3d_rs.F; fi if [ ! -L exch_uv_agrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r4.F; fi if [ ! -L exch_uv_agrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_r8.F; fi if [ ! -L exch_uv_agrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rl.F; fi if [ ! -L exch_uv_agrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rs.F exch_uv_agrid_3d_rs.F; fi if [ ! -L exch_uv_bgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r4.F; fi if [ ! -L exch_uv_bgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_r8.F; fi if [ ! -L exch_uv_bgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rl.F; fi if [ ! -L exch_uv_bgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rs.F exch_uv_bgrid_3d_rs.F; fi if [ ! -L exch_uv_dgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r4.F; fi if [ ! -L exch_uv_dgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_r8.F; fi if [ ! -L exch_uv_dgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rl.F; fi if [ ! -L exch_uv_dgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rs.F exch_uv_dgrid_3d_rs.F; fi if [ ! -L exch_uv_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r4.F exch_uv_xy_r4.F; fi if [ ! -L exch_uv_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r8.F exch_uv_xy_r8.F; fi if [ ! -L exch_uv_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rl.F exch_uv_xy_rl.F; fi if [ ! -L exch_uv_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rs.F exch_uv_xy_rs.F; fi if [ ! -L exch_uv_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r4.F exch_uv_xyz_r4.F; fi if [ ! -L exch_uv_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r8.F exch_uv_xyz_r8.F; fi if [ ! -L exch_uv_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rl.F exch_uv_xyz_rl.F; fi if [ ! -L exch_uv_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rs.F exch_uv_xyz_rs.F; fi if [ ! -L exch_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r4.F exch_xy_r4.F; fi if [ ! -L exch_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r8.F exch_xy_r8.F; fi if [ ! -L exch_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rl.F exch_xy_rl.F; fi if [ ! -L exch_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rs.F exch_xy_rs.F; fi if [ ! -L exch_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r4.F exch_xyz_r4.F; fi if [ ! -L exch_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r8.F exch_xyz_r8.F; fi if [ ! -L exch_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rl.F exch_xyz_rl.F; fi if [ ! -L exch_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rs.F exch_xyz_rs.F; fi if [ ! -L exch_z_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r4.F exch_z_3d_r4.F; fi if [ ! -L exch_z_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r8.F exch_z_3d_r8.F; fi if [ ! -L exch_z_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rl.F exch_z_3d_rl.F; fi if [ ! -L exch_z_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rs.F exch_z_3d_rs.F; fi if [ ! -L fill_cs_corner_ag_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_ag_rl.F fill_cs_corner_ag_rl.F; fi if [ ! -L fill_cs_corner_tr_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_tr_rl.F fill_cs_corner_tr_rl.F; fi if [ ! -L fill_cs_corner_uv_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rl.F fill_cs_corner_uv_rl.F; fi if [ ! -L fill_cs_corner_uv_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rs.F fill_cs_corner_uv_rs.F; fi if [ ! -L fool_the_compiler.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fool_the_compiler.F fool_the_compiler.F; fi if [ ! -L gather_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r4.F gather_2d_r4.F; fi if [ ! -L gather_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r8.F gather_2d_r8.F; fi if [ ! -L gather_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r4.F gather_2d_wh_r4.F; fi if [ ! -L gather_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r8.F gather_2d_wh_r8.F; fi if [ ! -L gather_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r4.F gather_vec_r4.F; fi if [ ! -L gather_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r8.F gather_vec_r8.F; fi if [ ! -L gather_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_xz.F gather_xz.F; fi if [ ! -L gather_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_yz.F gather_yz.F; fi if [ ! -L get_periodic_interval.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/get_periodic_interval.F get_periodic_interval.F; fi if [ ! -L global_max.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_max.F global_max.F; fi if [ ! -L global_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum.F global_sum.F; fi if [ ! -L global_sum_singlecpu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_singlecpu.F global_sum_singlecpu.F; fi if [ ! -L global_sum_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_tile.F global_sum_tile.F; fi if [ ! -L global_vec_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_vec_sum.F global_vec_sum.F; fi if [ ! -L gsum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsum.F gsum.F; fi if [ ! -L ini_communication_patterns.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_communication_patterns.F ini_communication_patterns.F; fi if [ ! -L ini_procs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_procs.F ini_procs.F; fi if [ ! -L ini_threading_environment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_threading_environment.F ini_threading_environment.F; fi if [ ! -L lef_zero.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/lef_zero.F lef_zero.F; fi if [ ! -L main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/main.F main.F; fi if [ ! -L master_cpu_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_io.F master_cpu_io.F; fi if [ ! -L master_cpu_thread.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_thread.F master_cpu_thread.F; fi if [ ! -L mds_byteswapi4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapi4.F mds_byteswapi4.F; fi if [ ! -L mds_byteswapr4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr4.F mds_byteswapr4.F; fi if [ ! -L mds_byteswapr8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr8.F mds_byteswapr8.F; fi if [ ! -L mdsfindunit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mdsfindunit.F mdsfindunit.F; fi if [ ! -L mds_flush.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_flush.F mds_flush.F; fi if [ ! -L mds_reclen.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_reclen.F mds_reclen.F; fi if [ ! -L memsync.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/memsync.F memsync.F; fi if [ ! -L nml_change_syntax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_change_syntax.F nml_change_syntax.F; fi if [ ! -L nml_set_terminator.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_set_terminator.F nml_set_terminator.F; fi if [ ! -L open_copy_data_file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/open_copy_data_file.F open_copy_data_file.F; fi if [ ! -L print.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/print.F print.F; fi if [ ! -L reset_halo.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/reset_halo.F reset_halo.F; fi if [ ! -L scatter_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r4.F scatter_2d_r4.F; fi if [ ! -L scatter_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r8.F scatter_2d_r8.F; fi if [ ! -L scatter_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r4.F scatter_2d_wh_r4.F; fi if [ ! -L scatter_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r8.F scatter_2d_wh_r8.F; fi if [ ! -L scatter_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r4.F scatter_vec_r4.F; fi if [ ! -L scatter_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r8.F scatter_vec_r8.F; fi if [ ! -L scatter_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_xz.F scatter_xz.F; fi if [ ! -L scatter_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_yz.F scatter_yz.F; fi if [ ! -L stop_if_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/stop_if_error.F stop_if_error.F; fi if [ ! -L timers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timers.F timers.F; fi if [ ! -L utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/utils.F utils.F; fi if [ ! -L write_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/write_utils.F write_utils.F; fi if [ ! -L adams_bashforth2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth2.F adams_bashforth2.F; fi if [ ! -L adams_bashforth3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth3.F adams_bashforth3.F; fi if [ ! -L add_walls2masks.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/add_walls2masks.F add_walls2masks.F; fi if [ ! -L apply_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/apply_forcing.F apply_forcing.F; fi if [ ! -L calc_3d_diffusivity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_3d_diffusivity.F calc_3d_diffusivity.F; fi if [ ! -L calc_adv_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_adv_flow.F calc_adv_flow.F; fi if [ ! -L calc_div_ghat.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_div_ghat.F calc_div_ghat.F; fi if [ ! -L calc_eddy_stress.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_eddy_stress.F calc_eddy_stress.F; fi if [ ! -L calc_grad_phi_fv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_fv.F calc_grad_phi_fv.F; fi if [ ! -L calc_grad_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_hyd.F calc_grad_phi_hyd.F; fi if [ ! -L calc_grad_phi_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_surf.F calc_grad_phi_surf.F; fi if [ ! -L calc_grid_angles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grid_angles.F calc_grid_angles.F; fi if [ ! -L calc_gw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_gw.F calc_gw.F; fi if [ ! -L calc_ivdc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_ivdc.F calc_ivdc.F; fi if [ ! -L calc_oce_mxlayer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_oce_mxlayer.F calc_oce_mxlayer.F; fi if [ ! -L calc_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_phi_hyd.F calc_phi_hyd.F; fi if [ ! -L calc_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_r_star.F calc_r_star.F; fi if [ ! -L calc_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_surf_dr.F calc_surf_dr.F; fi if [ ! -L calc_viscosity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_viscosity.F calc_viscosity.F; fi if [ ! -L calc_wsurf_tr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_wsurf_tr.F calc_wsurf_tr.F; fi if [ ! -L cg2d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_ex0.F cg2d_ex0.F; fi if [ ! -L cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d.F cg2d.F; fi if [ ! -L cg2d_nsa.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_nsa.F cg2d_nsa.F; fi if [ ! -L cg2d_sr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_sr.F cg2d_sr.F; fi if [ ! -L cg3d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d_ex0.F cg3d_ex0.F; fi if [ ! -L cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d.F cg3d.F; fi if [ ! -L check_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/check_pickup.F check_pickup.F; fi if [ ! -L config_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_check.F config_check.F; fi if [ ! -L config_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_summary.F config_summary.F; fi if [ ! -L convective_adjustment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment.F convective_adjustment.F; fi if [ ! -L convective_adjustment_ini.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment_ini.F convective_adjustment_ini.F; fi if [ ! -L convectively_mixtracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convectively_mixtracer.F convectively_mixtracer.F; fi if [ ! -L convective_weights.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_weights.F convective_weights.F; fi if [ ! -L correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/correction_step.F correction_step.F; fi if [ ! -L cycle_ab_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_ab_tracer.F cycle_ab_tracer.F; fi if [ ! -L cycle_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_tracer.F cycle_tracer.F; fi if [ ! -L diags_oceanic_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_oceanic_surf_flux.F diags_oceanic_surf_flux.F; fi if [ ! -L diags_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_hyd.F diags_phi_hyd.F; fi if [ ! -L diags_phi_rlow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_rlow.F diags_phi_rlow.F; fi if [ ! -L diags_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_rho.F diags_rho.F; fi if [ ! -L diags_sound_speed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_sound_speed.F diags_sound_speed.F; fi if [ ! -L do_atmospheric_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_atmospheric_phys.F do_atmospheric_phys.F; fi if [ ! -L do_fields_blocking_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_fields_blocking_exchanges.F do_fields_blocking_exchanges.F; fi if [ ! -L do_stagger_fields_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_stagger_fields_exchanges.F do_stagger_fields_exchanges.F; fi if [ ! -L do_statevars_diags.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_diags.F do_statevars_diags.F; fi if [ ! -L do_statevars_tave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_tave.F do_statevars_tave.F; fi if [ ! -L do_the_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_the_model_io.F do_the_model_io.F; fi if [ ! -L do_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_write_pickup.F do_write_pickup.F; fi if [ ! -L dynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/dynamics.F dynamics.F; fi if [ ! -L external_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_fields_load.F external_fields_load.F; fi if [ ! -L external_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing.F external_forcing.F; fi if [ ! -L external_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing_surf.F external_forcing_surf.F; fi if [ ! -L find_alpha.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_alpha.F find_alpha.F; fi if [ ! -L find_hyd_press_1d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_hyd_press_1d.F find_hyd_press_1d.F; fi if [ ! -L find_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_rho.F find_rho.F; fi if [ ! -L forcing_surf_relax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forcing_surf_relax.F forcing_surf_relax.F; fi if [ ! -L forward_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forward_step.F forward_step.F; fi if [ ! -L freesurf_rescale_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freesurf_rescale_g.F freesurf_rescale_g.F; fi if [ ! -L freeze_surface.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freeze_surface.F freeze_surface.F; fi if [ ! -L grad_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/grad_sigma.F grad_sigma.F; fi if [ ! -L gsw_teos10.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/gsw_teos10.F gsw_teos10.F; fi if [ ! -L impldiff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/impldiff.F impldiff.F; fi if [ ! -L ini_cartesian_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cartesian_grid.F ini_cartesian_grid.F; fi if [ ! -L ini_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg2d.F ini_cg2d.F; fi if [ ! -L ini_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg3d.F ini_cg3d.F; fi if [ ! -L ini_cori.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cori.F ini_cori.F; fi if [ ! -L ini_curvilinear_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_curvilinear_grid.F ini_curvilinear_grid.F; fi if [ ! -L ini_cylinder_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cylinder_grid.F ini_cylinder_grid.F; fi if [ ! -L ini_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_depths.F ini_depths.F; fi if [ ! -L ini_dynvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_dynvars.F ini_dynvars.F; fi if [ ! -L ini_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_eos.F ini_eos.F; fi if [ ! -L ini_ffields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_ffields.F ini_ffields.F; fi if [ ! -L ini_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_fields.F ini_fields.F; fi if [ ! -L ini_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_forcing.F ini_forcing.F; fi if [ ! -L ini_global_domain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_global_domain.F ini_global_domain.F; fi if [ ! -L ini_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_grid.F ini_grid.F; fi if [ ! -L ini_linear_phisurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_linear_phisurf.F ini_linear_phisurf.F; fi if [ ! -L ini_local_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_local_grid.F ini_local_grid.F; fi if [ ! -L ini_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_masks_etc.F ini_masks_etc.F; fi if [ ! -L ini_mixing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mixing.F ini_mixing.F; fi if [ ! -L ini_mnc_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mnc_vars.F ini_mnc_vars.F; fi if [ ! -L ini_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_model_io.F ini_model_io.F; fi if [ ! -L ini_nh_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_fields.F ini_nh_fields.F; fi if [ ! -L ini_nh_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_vars.F ini_nh_vars.F; fi if [ ! -L ini_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nlfs_vars.F ini_nlfs_vars.F; fi if [ ! -L ini_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_parms.F ini_parms.F; fi if [ ! -L ini_p_ground.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_p_ground.F ini_p_ground.F; fi if [ ! -L ini_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_pressure.F ini_pressure.F; fi if [ ! -L ini_psurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_psurf.F ini_psurf.F; fi if [ ! -L ini_salt.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_salt.F ini_salt.F; fi if [ ! -L ini_sigma_hfac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_sigma_hfac.F ini_sigma_hfac.F; fi if [ ! -L ini_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_spherical_polar_grid.F ini_spherical_polar_grid.F; fi if [ ! -L ini_theta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_theta.F ini_theta.F; fi if [ ! -L initialise_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_fixed.F initialise_fixed.F; fi if [ ! -L initialise_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_varia.F initialise_varia.F; fi if [ ! -L ini_vel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vel.F ini_vel.F; fi if [ ! -L ini_vertical_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vertical_grid.F ini_vertical_grid.F; fi if [ ! -L integrate_for_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integrate_for_w.F integrate_for_w.F; fi if [ ! -L integr_continuity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integr_continuity.F integr_continuity.F; fi if [ ! -L load_fields_driver.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_fields_driver.F load_fields_driver.F; fi if [ ! -L load_grid_spacing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_grid_spacing.F load_grid_spacing.F; fi if [ ! -L load_ref_files.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_ref_files.F load_ref_files.F; fi if [ ! -L main_do_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/main_do_loop.F main_do_loop.F; fi if [ ! -L momentum_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/momentum_correction_step.F momentum_correction_step.F; fi if [ ! -L packages_boot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_boot.F packages_boot.F; fi if [ ! -L packages_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_check.F packages_check.F; fi if [ ! -L packages_error_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_error_msg.F packages_error_msg.F; fi if [ ! -L packages_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_fixed.F packages_init_fixed.F; fi if [ ! -L packages_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_variables.F packages_init_variables.F; fi if [ ! -L packages_print_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_print_msg.F packages_print_msg.F; fi if [ ! -L packages_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_readparms.F packages_readparms.F; fi if [ ! -L packages_unused_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_unused_msg.F packages_unused_msg.F; fi if [ ! -L packages_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_write_pickup.F packages_write_pickup.F; fi if [ ! -L plot_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/plot_field.F plot_field.F; fi if [ ! -L port_rand.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/port_rand.F port_rand.F; fi if [ ! -L post_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/post_cg3d.F post_cg3d.F; fi if [ ! -L pre_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pre_cg3d.F pre_cg3d.F; fi if [ ! -L pressure_for_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pressure_for_eos.F pressure_for_eos.F; fi if [ ! -L read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/read_pickup.F read_pickup.F; fi if [ ! -L remove_mean.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/remove_mean.F remove_mean.F; fi if [ ! -L reset_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/reset_nlfs_vars.F reset_nlfs_vars.F; fi if [ ! -L rotate_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_spherical_polar_grid.F rotate_spherical_polar_grid.F; fi if [ ! -L rotate_uv2en.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_uv2en.F rotate_uv2en.F; fi if [ ! -L salt_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/salt_integrate.F salt_integrate.F; fi if [ ! -L seawater.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/seawater.F seawater.F; fi if [ ! -L set_defaults.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_defaults.F set_defaults.F; fi if [ ! -L set_grid_factors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_grid_factors.F set_grid_factors.F; fi if [ ! -L set_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_parms.F set_parms.F; fi if [ ! -L set_ref_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_ref_state.F set_ref_state.F; fi if [ ! -L solve_for_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_for_pressure.F solve_for_pressure.F; fi if [ ! -L solve_pentadiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_pentadiagonal.F solve_pentadiagonal.F; fi if [ ! -L solve_tridiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_tridiagonal.F solve_tridiagonal.F; fi if [ ! -L solve_uv_tridiago.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_uv_tridiago.F solve_uv_tridiago.F; fi if [ ! -L state_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/state_summary.F state_summary.F; fi if [ ! -L swfrac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/swfrac.F swfrac.F; fi if [ ! -L taueddy_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_init_varia.F taueddy_init_varia.F; fi if [ ! -L taueddy_tendency_apply.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_tendency_apply.F taueddy_tendency_apply.F; fi if [ ! -L temp_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/temp_integrate.F temp_integrate.F; fi if [ ! -L the_main_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_main_loop.F the_main_loop.F; fi if [ ! -L the_model_main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_model_main.F the_model_main.F; fi if [ ! -L thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/thermodynamics.F thermodynamics.F; fi if [ ! -L timestep.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep.F timestep.F; fi if [ ! -L timestep_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_tracer.F timestep_tracer.F; fi if [ ! -L timestep_wvel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_wvel.F timestep_wvel.F; fi if [ ! -L tracers_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_correction_step.F tracers_correction_step.F; fi if [ ! -L tracers_iigw_correction.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_iigw_correction.F tracers_iigw_correction.F; fi if [ ! -L turnoff_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/turnoff_model_io.F turnoff_model_io.F; fi if [ ! -L update_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_cg2d.F update_cg2d.F; fi if [ ! -L update_etah.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etah.F update_etah.F; fi if [ ! -L update_etaws.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etaws.F update_etaws.F; fi if [ ! -L update_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_masks_etc.F update_masks_etc.F; fi if [ ! -L update_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_r_star.F update_r_star.F; fi if [ ! -L update_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_sigma.F update_sigma.F; fi if [ ! -L update_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_surf_dr.F update_surf_dr.F; fi if [ ! -L write_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_grid.F write_grid.F; fi if [ ! -L write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_pickup.F write_pickup.F; fi if [ ! -L write_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_state.F write_state.F; fi if [ ! -L gsl_ieee_env.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsl_ieee_env.c gsl_ieee_env.c; fi if [ ! -L ptwrapper.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ptwrapper.c ptwrapper.c; fi if [ ! -L setdir.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setdir.c setdir.c; fi if [ ! -L setrlstk.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setrlstk.c setrlstk.c; fi if [ ! -L sigreg.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/sigreg.c sigreg.c; fi if [ ! -L tim.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/tim.c tim.c; fi if [ ! -L timer_stats.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timer_stats.c timer_stats.c; fi if [ ! -L CPP_EEOPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h CPP_EEOPTIONS.h; fi if [ ! -L SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/SIZE.h SIZE.h; fi if [ ! -L DEBUG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/DEBUG_OPTIONS.h DEBUG_OPTIONS.h; fi if [ ! -L DIAGNOSTICS_CALC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_CALC.h DIAGNOSTICS_CALC.h; fi if [ ! -L DIAGNOSTICS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS.h DIAGNOSTICS.h; fi if [ ! -L DIAGNOSTICS_SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_SIZE.h DIAGNOSTICS_SIZE.h; fi if [ ! -L DIAG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAG_OPTIONS.h DIAG_OPTIONS.h; fi if [ ! -L DIAGSTATS_REGIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGSTATS_REGIONS.h DIAGSTATS_REGIONS.h; fi if [ ! -L gad_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev1_dir.h gad_ad_check_lev1_dir.h; fi if [ ! -L gad_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev2_dir.h gad_ad_check_lev2_dir.h; fi if [ ! -L gad_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev3_dir.h gad_ad_check_lev3_dir.h; fi if [ ! -L gad_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev4_dir.h gad_ad_check_lev4_dir.h; fi if [ ! -L GAD_FLUX_LIMITER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_FLUX_LIMITER.h GAD_FLUX_LIMITER.h; fi if [ ! -L GAD.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD.h GAD.h; fi if [ ! -L GAD_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_OPTIONS.h GAD_OPTIONS.h; fi if [ ! -L GAD_SOM_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_SOM_VARS.h GAD_SOM_VARS.h; fi if [ ! -L MDSIO_BUFF_3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_3D.h MDSIO_BUFF_3D.h; fi if [ ! -L MDSIO_BUFF_WH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_WH.h MDSIO_BUFF_WH.h; fi if [ ! -L MDSIO_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_OPTIONS.h MDSIO_OPTIONS.h; fi if [ ! -L MOM_COMMON_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_COMMON_OPTIONS.h MOM_COMMON_OPTIONS.h; fi if [ ! -L MOM_VISC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_VISC.h MOM_VISC.h; fi if [ ! -L MOM_FLUXFORM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM.h MOM_FLUXFORM.h; fi if [ ! -L MOM_FLUXFORM_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MOM_FLUXFORM_OPTIONS.h; fi if [ ! -L MOM_VECINV_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MOM_VECINV_OPTIONS.h; fi if [ ! -L MONITOR.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR.h MONITOR.h; fi if [ ! -L MONITOR_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR_OPTIONS.h MONITOR_OPTIONS.h; fi if [ ! -L obcs_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev1_dir.h obcs_ad_check_lev1_dir.h; fi if [ ! -L obcs_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev2_dir.h obcs_ad_check_lev2_dir.h; fi if [ ! -L obcs_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev3_dir.h obcs_ad_check_lev3_dir.h; fi if [ ! -L obcs_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev4_dir.h obcs_ad_check_lev4_dir.h; fi if [ ! -L OBCS_FIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_FIELDS.h OBCS_FIELDS.h; fi if [ ! -L OBCS_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_GRID.h OBCS_GRID.h; fi if [ ! -L OBCS_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_OPTIONS.h OBCS_OPTIONS.h; fi if [ ! -L OBCS_PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PARAMS.h OBCS_PARAMS.h; fi if [ ! -L OBCS_PTRACERS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PTRACERS.h OBCS_PTRACERS.h; fi if [ ! -L OBCS_SEAICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_SEAICE.h OBCS_SEAICE.h; fi if [ ! -L ORLANSKI.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/ORLANSKI.h ORLANSKI.h; fi if [ ! -L RW_MFLDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_MFLDS.h RW_MFLDS.h; fi if [ ! -L RW_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_OPTIONS.h RW_OPTIONS.h; fi if [ ! -L shelfice_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev1_dir.h shelfice_ad_check_lev1_dir.h; fi if [ ! -L shelfice_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev2_dir.h shelfice_ad_check_lev2_dir.h; fi if [ ! -L shelfice_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev3_dir.h shelfice_ad_check_lev3_dir.h; fi if [ ! -L shelfice_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev4_dir.h shelfice_ad_check_lev4_dir.h; fi if [ ! -L SHELFICE_COST.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_COST.h SHELFICE_COST.h; fi if [ ! -L SHELFICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE.h SHELFICE.h; fi if [ ! -L SHELFICE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_OPTIONS.h SHELFICE_OPTIONS.h; fi if [ ! -L SHELFICE_TAVE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_TAVE.h SHELFICE_TAVE.h; fi if [ ! -L TIMEAVE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_OPTIONS.h TIMEAVE_OPTIONS.h; fi if [ ! -L TIMEAVE_STATV.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_STATV.h TIMEAVE_STATV.h; fi if [ ! -L cmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_c.h cmumps_c.h; fi if [ ! -L cmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_root.h cmumps_root.h; fi if [ ! -L cmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_struc.h cmumps_struc.h; fi if [ ! -L dmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_c.h dmumps_c.h; fi if [ ! -L dmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_root.h dmumps_root.h; fi if [ ! -L dmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_struc.h dmumps_struc.h; fi if [ ! -L gklib_defs.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_defs.h gklib_defs.h; fi if [ ! -L gklib_rename.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_rename.h gklib_rename.h; fi if [ ! -L gklib_tls.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_tls.h gklib_tls.h; fi if [ ! -L metis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/metis.h metis.h; fi if [ ! -L mpicxx.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpicxx.h mpicxx.h; fi if [ ! -L mpif.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpif.h mpif.h; fi if [ ! -L mpi.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi.h mpi.h; fi if [ ! -L mpiof.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpiof.h mpiof.h; fi if [ ! -L mpio.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpio.h mpio.h; fi if [ ! -L mpi_proto.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi_proto.h mpi_proto.h; fi if [ ! -L mumps_compat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_compat.h mumps_compat.h; fi if [ ! -L mumps_c_types.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_c_types.h mumps_c_types.h; fi if [ ! -L mumps_int_def.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_int_def.h mumps_int_def.h; fi if [ ! -L parmetis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/parmetis.h parmetis.h; fi if [ ! -L petscao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscao.h petscao.h; fi if [ ! -L petscbag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbag.h petscbag.h; fi if [ ! -L petscblaslapack.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack.h petscblaslapack.h; fi if [ ! -L petscblaslapack_mangle.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack_mangle.h petscblaslapack_mangle.h; fi if [ ! -L petscbm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbm.h petscbm.h; fi if [ ! -L petscbt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbt.h petscbt.h; fi if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi if [ ! -L petscctable.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscctable.h petscctable.h; fi if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi if [ ! -L petscdmadaptortypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptortypes.h petscdmadaptortypes.h; fi if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi if [ ! -L petscsnestypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnestypes.h petscsnestypes.h; fi if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi if [ ! -L petsctao_deprecations.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao_deprecations.h petsctao_deprecations.h; fi if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi Creating FC_NAMEMANGLE.h ... echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h Creating BUILD_INFO.h ... echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h echo "#define THISDATE 'Tue Jul 22 01:10:23 AM PDT 2025'" >> BUILD_INFO.h echo "#define THISHOST 'Debian-12-VM'" >> BUILD_INFO.h make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/12/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F Appending dependencies to Makefile /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile WARNING: f90mkdepend: no source file found for module `petscdtbinomial()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `petsccalla()`. WARNING: f90mkdepend: no source file found for module `chkmema` WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()` WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser` WARNING: f90mkdepend: no source file found for module this WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()` WARNING: f90mkdepend: no source file found for module `mpiu_sf_node` WARNING: f90mkdepend: no source file found for module `petsc_null_integer` WARNING: f90mkdepend: no source file found for module `petsc_unlimited_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide_integer` WARNING: f90mkdepend: no source file found for module `petsc_determine_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide` WARNING: f90mkdepend: no source file found for module `petsc_current_integer` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module the WARNING: f90mkdepend: no source file found for module `petscclassidregister()` WARNING: f90mkdepend: no source file found for module `petsccount_fmt` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()` rm -f makedepend.out [41;37m step #6: RunUncoupledMITgcm [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END [41;37m step #7: CreateMesh [0m Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0) saving model as: Models/IceOcean.CreateMesh [41;37m step #8: MeshGeometry [0m saving model as: Models/IceOcean.MeshGeometry [41;37m step #9: ParameterizeIce [0m saving model as: Models/IceOcean.ParameterizeIce [41;37m step #10: RunUncoupledISSM [0m checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind and https://petsc.org/release/faq/ [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: Run with -malloc_debug to check if memory corruption is causing the crash. application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 loading results from cluster cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-07-22-2025-01-13-56-3250578//test4001.outbin': No such file or directory Error using loadresultsfromdisk ========================================================================= Binary file test4001.outbin not found This typically results from an error encountered during the simulation Please check for error messages above or in the outlog ========================================================================= Error in loadresultsfromcluster (line 50) md=loadresultsfromdisk(md,[md.miscellaneous.name '.outbin']); Error in solve (line 180) md=loadresultsfromcluster(md); Error in test4001 (line 556) md=solve(md,'Transient'); Error in run (line 99) evalin('caller', strcat(script, ';')); Error in runme (line 156) run(['test' num2str(id)]); Error in matlab_run2 (line 3) runme('benchmark','all','id',[4001],'output','nightly','rank',2,'numprocs',2);FAILURE difference: N/A test id: 4001 test name: IceOcean field: N/A +++ exit code: 0 +++ error: 1 +++ Running case: MATLAB-4001 +++ working dir: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog [41;37m step #1: Parameters [0m saving data in: Models/IceOcean.Parameters [41;37m step #2: Bathymetry [0m saving data in: Models/IceOcean.Bathymetry [41;37m step #3: IceSheetGeometry [0m saving data in: Models/IceOcean.IceSheetGeometry [41;37m step #4: GetMITgcm [0m --2025-07-22 01:10:09-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz Resolving github.com (github.com)... 140.82.116.3 Connecting to github.com (github.com)|140.82.116.3|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following] --2025-07-22 01:10:09-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i Resolving codeload.github.com (codeload.github.com)... 140.82.116.9 Connecting to codeload.github.com (codeload.github.com)|140.82.116.9|:443... connected. HTTP request sent, awaiting response... 200 OK Length: unspecified [application/x-gzip] Saving to: checkpoint68i.tar.gz checkpoint68i.tar.g [<=> ] 0 --.-KB/s checkpoint68i.tar.g [ <=> ] 861.37K 4.20MB/s checkpoint68i.tar.g [ <=> ] 7.54M 18.8MB/s checkpoint68i.tar.g [ <=> ] 14.67M 24.4MB/s checkpoint68i.tar.g [ <=> ] 19.35M 24.1MB/s checkpoint68i.tar.g [ <=> ] 25.30M 25.3MB/s checkpoint68i.tar.g [ <=> ] 30.55M 25.4MB/s checkpoint68i.tar.g [ <=> ] 35.91M 25.6MB/s checkpoint68i.tar.g [ <=> ] 40.25M 25.0MB/s checkpoint68i.tar.g [ <=> ] 43.75M 23.9MB/s checkpoint68i.tar.g [ <=> ] 45.50M 22.1MB/s checkpoint68i.tar.g [ <=> ] 47.25M 20.8MB/s checkpoint68i.tar.g [ <=> ] 50.00M 20.1MB/s checkpoint68i.tar.g [ <=> ] 52.23M 19.5MB/s checkpoint68i.tar.g [ <=> ] 56.25M 19.4MB/s checkpoint68i.tar.g [ <=> ] 58.49M 18.9MB/s checkpoint68i.tar.g [ <=> ] 61.50M 19.5MB/s checkpoint68i.tar.g [ <=>] 64.25M 18.6MB/s checkpoint68i.tar.g [ <=> ] 67.00M 17.6MB/s checkpoint68i.tar.g [ <=> ] 69.75M 16.4MB/s 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[ <=> ] 140.75M 15.0MB/s checkpoint68i.tar.g [ <=> ] 143.75M 14.8MB/s checkpoint68i.tar.g [ <=> ] 147.17M 14.9MB/s checkpoint68i.tar.g [ <=> ] 150.42M 14.9MB/s checkpoint68i.tar.g [ <=> ] 153.66M 14.7MB/s checkpoint68i.tar.g [ <=> ] 155.50M 14.4MB/s checkpoint68i.tar.g [ <=> ] 158.50M 14.4MB/s checkpoint68i.tar.g [ <=> ] 162.50M 15.1MB/s checkpoint68i.tar.g [ <=> ] 164.87M 15.0MB/s in 10s 2025-07-22 01:10:20 (16.2 MB/s) - checkpoint68i.tar.gz saved [172875785] MITgcm-checkpoint68i/ MITgcm-checkpoint68i/.github/ MITgcm-checkpoint68i/.github/ISSUE_TEMPLATE.md MITgcm-checkpoint68i/.github/PULL_REQUEST_TEMPLATE.md MITgcm-checkpoint68i/.github/workflows/ MITgcm-checkpoint68i/.github/workflows/build_testing.yml MITgcm-checkpoint68i/.gitignore MITgcm-checkpoint68i/.readthedocs.yml MITgcm-checkpoint68i/LICENSE.txt MITgcm-checkpoint68i/README.md MITgcm-checkpoint68i/doc/ MITgcm-checkpoint68i/doc/Makefile MITgcm-checkpoint68i/doc/_extensions/ MITgcm-checkpoint68i/doc/_extensions/mitgcm.py 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MITgcm-checkpoint68i/eesupp/src/exch1_rx.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_uv_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_z_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_ad_diff.list MITgcm-checkpoint68i/eesupp/src/exch_cycle_ebl.F MITgcm-checkpoint68i/eesupp/src/exch_init.F MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_y.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_y.template MITgcm-checkpoint68i/eesupp/src/exch_s3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_sm_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_agrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_z_3d_rx.template MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_ag_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_tr_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rs.F MITgcm-checkpoint68i/eesupp/src/fool_the_compiler.F MITgcm-checkpoint68i/eesupp/src/gather_2d_rx.template MITgcm-checkpoint68i/eesupp/src/gather_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/gather_vec_rx.template MITgcm-checkpoint68i/eesupp/src/gather_xz.F MITgcm-checkpoint68i/eesupp/src/gather_yz.F MITgcm-checkpoint68i/eesupp/src/get_periodic_interval.F MITgcm-checkpoint68i/eesupp/src/global_max.F MITgcm-checkpoint68i/eesupp/src/global_sum.F MITgcm-checkpoint68i/eesupp/src/global_sum_singlecpu.F MITgcm-checkpoint68i/eesupp/src/global_sum_tile.F MITgcm-checkpoint68i/eesupp/src/global_vec_sum.F MITgcm-checkpoint68i/eesupp/src/gsl_ieee_env.c MITgcm-checkpoint68i/eesupp/src/gsum.F MITgcm-checkpoint68i/eesupp/src/ini_communication_patterns.F MITgcm-checkpoint68i/eesupp/src/ini_procs.F MITgcm-checkpoint68i/eesupp/src/ini_threading_environment.F MITgcm-checkpoint68i/eesupp/src/lef_zero.F MITgcm-checkpoint68i/eesupp/src/main.F MITgcm-checkpoint68i/eesupp/src/master_cpu_io.F MITgcm-checkpoint68i/eesupp/src/master_cpu_thread.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapi4.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapr4.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapr8.F MITgcm-checkpoint68i/eesupp/src/mds_flush.F MITgcm-checkpoint68i/eesupp/src/mds_reclen.F MITgcm-checkpoint68i/eesupp/src/mdsfindunit.F MITgcm-checkpoint68i/eesupp/src/memsync.F MITgcm-checkpoint68i/eesupp/src/nml_change_syntax.F MITgcm-checkpoint68i/eesupp/src/nml_set_terminator.F MITgcm-checkpoint68i/eesupp/src/open_copy_data_file.F MITgcm-checkpoint68i/eesupp/src/print.F MITgcm-checkpoint68i/eesupp/src/ptwrapper.c MITgcm-checkpoint68i/eesupp/src/reset_halo.F MITgcm-checkpoint68i/eesupp/src/scatter_2d_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_vec_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_xz.F MITgcm-checkpoint68i/eesupp/src/scatter_yz.F MITgcm-checkpoint68i/eesupp/src/setdir.c MITgcm-checkpoint68i/eesupp/src/setrlstk.c MITgcm-checkpoint68i/eesupp/src/sigreg.c MITgcm-checkpoint68i/eesupp/src/stop_if_error.F MITgcm-checkpoint68i/eesupp/src/tim.c MITgcm-checkpoint68i/eesupp/src/timer_stats.c MITgcm-checkpoint68i/eesupp/src/timers.F MITgcm-checkpoint68i/eesupp/src/utils.F MITgcm-checkpoint68i/eesupp/src/write_utils.F MITgcm-checkpoint68i/jobs/ MITgcm-checkpoint68i/jobs/run_mitgcm_aer.csh MITgcm-checkpoint68i/jobs/run_mitgcm_eaps.csh MITgcm-checkpoint68i/jobs/run_mitgcm_gfdl.csh MITgcm-checkpoint68i/jobs/run_mitgcm_itrda.csh MITgcm-checkpoint68i/jobs/run_mitgcm_sp4_bluesky.csh MITgcm-checkpoint68i/jobs/run_optim.csh MITgcm-checkpoint68i/lsopt/ MITgcm-checkpoint68i/lsopt/Makefile MITgcm-checkpoint68i/lsopt/Makefile_macosx MITgcm-checkpoint68i/lsopt/README.md MITgcm-checkpoint68i/lsopt/blas1.h MITgcm-checkpoint68i/lsopt/cubic.F MITgcm-checkpoint68i/lsopt/data.ctrl MITgcm-checkpoint68i/lsopt/data.ecco MITgcm-checkpoint68i/lsopt/data.optim MITgcm-checkpoint68i/lsopt/dgscale.F MITgcm-checkpoint68i/lsopt/dostore.F MITgcm-checkpoint68i/lsopt/hessupd.F MITgcm-checkpoint68i/lsopt/instore.F MITgcm-checkpoint68i/lsopt/libblas1.a_IRIX64.gz MITgcm-checkpoint68i/lsopt/libblas1.a_SUN.gz MITgcm-checkpoint68i/lsopt/libgoto_it2-r0.95.so.gz MITgcm-checkpoint68i/lsopt/libgoto_p4_512-r0.94.so.gz MITgcm-checkpoint68i/lsopt/lsline.F MITgcm-checkpoint68i/lsopt/lsopt_doc.txt MITgcm-checkpoint68i/lsopt/lsopt_top.F MITgcm-checkpoint68i/lsopt/lsupdxx.F MITgcm-checkpoint68i/lsopt/lswri.F MITgcm-checkpoint68i/lsopt/outstore.F MITgcm-checkpoint68i/model/ MITgcm-checkpoint68i/model/inc/ MITgcm-checkpoint68i/model/inc/CG2D.h MITgcm-checkpoint68i/model/inc/CG3D.h MITgcm-checkpoint68i/model/inc/CPP_OPTIONS.h MITgcm-checkpoint68i/model/inc/DXC_MACROS.h MITgcm-checkpoint68i/model/inc/DXF_MACROS.h MITgcm-checkpoint68i/model/inc/DXG_MACROS.h MITgcm-checkpoint68i/model/inc/DXV_MACROS.h MITgcm-checkpoint68i/model/inc/DYC_MACROS.h MITgcm-checkpoint68i/model/inc/DYF_MACROS.h MITgcm-checkpoint68i/model/inc/DYG_MACROS.h MITgcm-checkpoint68i/model/inc/DYNVARS.h MITgcm-checkpoint68i/model/inc/DYU_MACROS.h MITgcm-checkpoint68i/model/inc/EOS.h MITgcm-checkpoint68i/model/inc/FCORI_MACROS.h MITgcm-checkpoint68i/model/inc/FFIELDS.h MITgcm-checkpoint68i/model/inc/GRID.h MITgcm-checkpoint68i/model/inc/GRID_MACROS.h 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MITgcm-checkpoint68i/model/inc/RESTART.h MITgcm-checkpoint68i/model/inc/SET_GRID.h MITgcm-checkpoint68i/model/inc/SIZE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE3D.h MITgcm-checkpoint68i/model/inc/SURFACE.h MITgcm-checkpoint68i/model/inc/TANPHIATU_MACROS.h MITgcm-checkpoint68i/model/inc/TANPHIATV_MACROS.h MITgcm-checkpoint68i/model/inc/THE_MODEL_COMMON_BLOCKS.h MITgcm-checkpoint68i/model/inc/XC_MACROS.h MITgcm-checkpoint68i/model/inc/YC_MACROS.h MITgcm-checkpoint68i/model/src/ MITgcm-checkpoint68i/model/src/adams_bashforth2.F MITgcm-checkpoint68i/model/src/adams_bashforth3.F MITgcm-checkpoint68i/model/src/add_walls2masks.F MITgcm-checkpoint68i/model/src/apply_forcing.F MITgcm-checkpoint68i/model/src/calc_3d_diffusivity.F MITgcm-checkpoint68i/model/src/calc_adv_flow.F MITgcm-checkpoint68i/model/src/calc_div_ghat.F MITgcm-checkpoint68i/model/src/calc_eddy_stress.F MITgcm-checkpoint68i/model/src/calc_grad_phi_fv.F 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MITgcm-checkpoint68i/model/src/update_etah.F MITgcm-checkpoint68i/model/src/update_etaws.F MITgcm-checkpoint68i/model/src/update_masks_etc.F MITgcm-checkpoint68i/model/src/update_r_star.F MITgcm-checkpoint68i/model/src/update_sigma.F MITgcm-checkpoint68i/model/src/update_surf_dr.F MITgcm-checkpoint68i/model/src/write_grid.F MITgcm-checkpoint68i/model/src/write_pickup.F MITgcm-checkpoint68i/model/src/write_state.F MITgcm-checkpoint68i/optim/ MITgcm-checkpoint68i/optim/Makefile MITgcm-checkpoint68i/optim/Makefile_macosx MITgcm-checkpoint68i/optim/README.md MITgcm-checkpoint68i/optim/blas1.h MITgcm-checkpoint68i/optim/data.ctrl MITgcm-checkpoint68i/optim/data.ecco MITgcm-checkpoint68i/optim/data.optim MITgcm-checkpoint68i/optim/flowchart_optim.txt MITgcm-checkpoint68i/optim/minimization.h MITgcm-checkpoint68i/optim/optim.h MITgcm-checkpoint68i/optim/optim_initmod.F MITgcm-checkpoint68i/optim/optim_main.F MITgcm-checkpoint68i/optim/optim_numbmod.F MITgcm-checkpoint68i/optim/optim_readdata.F MITgcm-checkpoint68i/optim/optim_sub.F MITgcm-checkpoint68i/optim/optim_write_control.F MITgcm-checkpoint68i/optim/optim_writedata.F MITgcm-checkpoint68i/optim/simul.F MITgcm-checkpoint68i/optim/to_do.txt MITgcm-checkpoint68i/optim/utils.F MITgcm-checkpoint68i/optim/xerbla.F MITgcm-checkpoint68i/pkg/ MITgcm-checkpoint68i/pkg/admtlm/ MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h MITgcm-checkpoint68i/pkg/aim_v23/ MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F 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MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_tile_ad.F MITgcm-checkpoint68i/pkg/autodiff/initialisation.flow MITgcm-checkpoint68i/pkg/autodiff/model_ad.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.F MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction_ad.F MITgcm-checkpoint68i/pkg/autodiff/system.flow MITgcm-checkpoint68i/pkg/autodiff/tamc.h MITgcm-checkpoint68i/pkg/autodiff/zero_adj.F MITgcm-checkpoint68i/pkg/autodiff/zero_adj.flow MITgcm-checkpoint68i/pkg/bbl/ MITgcm-checkpoint68i/pkg/bbl/BBL.h MITgcm-checkpoint68i/pkg/bbl/BBL_OPTIONS.h MITgcm-checkpoint68i/pkg/bbl/bbl_ad.flow MITgcm-checkpoint68i/pkg/bbl/bbl_ad_diff.list MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rho.F MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rhs.F MITgcm-checkpoint68i/pkg/bbl/bbl_check.F MITgcm-checkpoint68i/pkg/bbl/bbl_description.tex MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_init.F MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_state.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_fixed.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_varia.F MITgcm-checkpoint68i/pkg/bbl/bbl_read_pickup.F MITgcm-checkpoint68i/pkg/bbl/bbl_readparms.F MITgcm-checkpoint68i/pkg/bbl/bbl_tendency_apply.F MITgcm-checkpoint68i/pkg/bbl/bbl_write_pickup.F MITgcm-checkpoint68i/pkg/bling/ MITgcm-checkpoint68i/pkg/bling/BLING_LOAD.h MITgcm-checkpoint68i/pkg/bling/BLING_OPTIONS.h MITgcm-checkpoint68i/pkg/bling/BLING_VARS.h MITgcm-checkpoint68i/pkg/bling/CHANGES_TO_BLING.txt MITgcm-checkpoint68i/pkg/bling/bling_ad.flow MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_diff.list MITgcm-checkpoint68i/pkg/bling/bling_airseaflux.F MITgcm-checkpoint68i/pkg/bling/bling_bio.F MITgcm-checkpoint68i/pkg/bling/bling_bio_nitrogen.F MITgcm-checkpoint68i/pkg/bling/bling_carbon_chem.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_init.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_sys.F MITgcm-checkpoint68i/pkg/bling/bling_description.txt MITgcm-checkpoint68i/pkg/bling/bling_diagnostics_init.F MITgcm-checkpoint68i/pkg/bling/bling_fields_load.F MITgcm-checkpoint68i/pkg/bling/bling_ini_forcing.F MITgcm-checkpoint68i/pkg/bling/bling_init_fixed.F MITgcm-checkpoint68i/pkg/bling/bling_init_varia.F MITgcm-checkpoint68i/pkg/bling/bling_light.F MITgcm-checkpoint68i/pkg/bling/bling_main.F MITgcm-checkpoint68i/pkg/bling/bling_min_val.F MITgcm-checkpoint68i/pkg/bling/bling_mixedlayer.F MITgcm-checkpoint68i/pkg/bling/bling_read_pickup.F MITgcm-checkpoint68i/pkg/bling/bling_readparms.F MITgcm-checkpoint68i/pkg/bling/bling_sgs.F MITgcm-checkpoint68i/pkg/bling/bling_solvesaphe.F MITgcm-checkpoint68i/pkg/bling/bling_tr_register.F MITgcm-checkpoint68i/pkg/bling/bling_write_pickup.F MITgcm-checkpoint68i/pkg/bulk_force/ MITgcm-checkpoint68i/pkg/bulk_force/BULKF.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_CONSERV.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_INT.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_PARAMS.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_TAVE.h MITgcm-checkpoint68i/pkg/bulk_force/BULK_FORCE_OPTIONS.h MITgcm-checkpoint68i/pkg/bulk_force/bulkf_ave.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_fields_load.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_flux_adjust.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_forcing.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_aim.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lanl.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lay.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_init_varia.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_output.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_readparms.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_sh2rh_aim.F MITgcm-checkpoint68i/pkg/cal/ MITgcm-checkpoint68i/pkg/cal/CAL_OPTIONS.h MITgcm-checkpoint68i/pkg/cal/cal.h MITgcm-checkpoint68i/pkg/cal/cal_ad_diff.list MITgcm-checkpoint68i/pkg/cal/cal_addtime.F MITgcm-checkpoint68i/pkg/cal/cal_checkdate.F MITgcm-checkpoint68i/pkg/cal/cal_compdates.F MITgcm-checkpoint68i/pkg/cal/cal_convdate.F MITgcm-checkpoint68i/pkg/cal/cal_copydate.F MITgcm-checkpoint68i/pkg/cal/cal_daysformonth.F MITgcm-checkpoint68i/pkg/cal/cal_dayspermonth.F MITgcm-checkpoint68i/pkg/cal/cal_description.tex MITgcm-checkpoint68i/pkg/cal/cal_fulldate.F MITgcm-checkpoint68i/pkg/cal/cal_getdate.F MITgcm-checkpoint68i/pkg/cal/cal_getmonthsrec.F MITgcm-checkpoint68i/pkg/cal/cal_init_fixed.F MITgcm-checkpoint68i/pkg/cal/cal_intdays.F MITgcm-checkpoint68i/pkg/cal/cal_intmonths.F MITgcm-checkpoint68i/pkg/cal/cal_intyears.F MITgcm-checkpoint68i/pkg/cal/cal_isleap.F MITgcm-checkpoint68i/pkg/cal/cal_monthsforyear.F MITgcm-checkpoint68i/pkg/cal/cal_monthsperyear.F MITgcm-checkpoint68i/pkg/cal/cal_numints.F MITgcm-checkpoint68i/pkg/cal/cal_printdate.F MITgcm-checkpoint68i/pkg/cal/cal_printerror.F MITgcm-checkpoint68i/pkg/cal/cal_readparms.F MITgcm-checkpoint68i/pkg/cal/cal_set.F MITgcm-checkpoint68i/pkg/cal/cal_stepsforday.F MITgcm-checkpoint68i/pkg/cal/cal_stepsperday.F MITgcm-checkpoint68i/pkg/cal/cal_subdates.F MITgcm-checkpoint68i/pkg/cal/cal_summary.F MITgcm-checkpoint68i/pkg/cal/cal_time2dump.F MITgcm-checkpoint68i/pkg/cal/cal_timeinterval.F MITgcm-checkpoint68i/pkg/cal/cal_timepassed.F MITgcm-checkpoint68i/pkg/cal/cal_timestamp.F MITgcm-checkpoint68i/pkg/cal/cal_toseconds.F MITgcm-checkpoint68i/pkg/cal/cal_weekday.F MITgcm-checkpoint68i/pkg/cd_code/ MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_OPTIONS.h MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_VARS.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad.flow MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_diff.list MITgcm-checkpoint68i/pkg/cd_code/cd_code_ini_vars.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_init_fixed.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_read_pickup.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_scheme.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_write_pickup.F MITgcm-checkpoint68i/pkg/cfc/ MITgcm-checkpoint68i/pkg/cfc/CFC.h MITgcm-checkpoint68i/pkg/cfc/CFC_ATMOS.h MITgcm-checkpoint68i/pkg/cfc/CFC_SIZE.h MITgcm-checkpoint68i/pkg/cfc/cfc11_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc11_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_diff.list MITgcm-checkpoint68i/pkg/cfc/cfc_atmos.F MITgcm-checkpoint68i/pkg/cfc/cfc_check.F MITgcm-checkpoint68i/pkg/cfc/cfc_fields_load.F MITgcm-checkpoint68i/pkg/cfc/cfc_param.F MITgcm-checkpoint68i/pkg/cfc/cfc_readparms.F MITgcm-checkpoint68i/pkg/cfc/cfc_tr_register.F MITgcm-checkpoint68i/pkg/cheapaml/ MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML.h MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML_OPTIONS.h MITgcm-checkpoint68i/pkg/cheapaml/cheapaml.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_calc_rhs.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_coare3_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_copy_edges.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_diagnostics_init.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_fields_load.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_fixed.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_varia.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_lanl_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_read_pickup.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_readparms.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_seaice.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_timestep.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_write_pickup.F MITgcm-checkpoint68i/pkg/chronos/ MITgcm-checkpoint68i/pkg/chronos/chronos.F MITgcm-checkpoint68i/pkg/chronos/chronos.h MITgcm-checkpoint68i/pkg/compon_communic/ MITgcm-checkpoint68i/pkg/compon_communic/CPLR_SIG.h MITgcm-checkpoint68i/pkg/compon_communic/comprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/generate_tag.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_all_check.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2dbl.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2int.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2real.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_dbl2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init1.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2a.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2b.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_initcomp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_int2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_match_comp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_real2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_sortranks.F MITgcm-checkpoint68i/pkg/cost/ MITgcm-checkpoint68i/pkg/cost/COST_OPTIONS.h MITgcm-checkpoint68i/pkg/cost/adcost.h MITgcm-checkpoint68i/pkg/cost/cost.h MITgcm-checkpoint68i/pkg/cost/cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/cost/cost_ad.flow MITgcm-checkpoint68i/pkg/cost/cost_ad_diff.list MITgcm-checkpoint68i/pkg/cost/cost_atlantic_heat.F MITgcm-checkpoint68i/pkg/cost/cost_check.F MITgcm-checkpoint68i/pkg/cost/cost_dependent_init.F MITgcm-checkpoint68i/pkg/cost/cost_depth.F MITgcm-checkpoint68i/pkg/cost/cost_final.F MITgcm-checkpoint68i/pkg/cost/cost_final_restore.F MITgcm-checkpoint68i/pkg/cost/cost_final_store.F MITgcm-checkpoint68i/pkg/cost/cost_init_varia.F MITgcm-checkpoint68i/pkg/cost/cost_readparms.F MITgcm-checkpoint68i/pkg/cost/cost_state_final.F MITgcm-checkpoint68i/pkg/cost/cost_test.F MITgcm-checkpoint68i/pkg/cost/cost_tile.F MITgcm-checkpoint68i/pkg/cost/cost_tracer.F MITgcm-checkpoint68i/pkg/cost/cost_vector.F MITgcm-checkpoint68i/pkg/cost/g_cost.h MITgcm-checkpoint68i/pkg/ctrl/ MITgcm-checkpoint68i/pkg/ctrl/CTRL_FIELDS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_GENARR.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OBCS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OPTIONS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_SIZE.h MITgcm-checkpoint68i/pkg/ctrl/adctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_diff.list MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.flow MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound_tl.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_check.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_driver.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_depth_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_description.tex MITgcm-checkpoint68i/pkg/ctrl/ctrl_dummy.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_mask.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcse.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsn.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcss.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsw.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getrec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_hfacc_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_ctrlvar.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_obcs_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_wet.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_local_params.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_forcing.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_ecco.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_pack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_readparms.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_fname.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_smooth.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_summary.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_swapffields.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_toolbox.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_unpack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_weights.h MITgcm-checkpoint68i/pkg/ctrl/optim.h MITgcm-checkpoint68i/pkg/ctrl/optim_readparms.F MITgcm-checkpoint68i/pkg/debug/ MITgcm-checkpoint68i/pkg/debug/DEBUG_OPTIONS.h MITgcm-checkpoint68i/pkg/debug/chksum_tiled.F MITgcm-checkpoint68i/pkg/debug/debug_ad.flow MITgcm-checkpoint68i/pkg/debug/debug_call.F MITgcm-checkpoint68i/pkg/debug/debug_cs_corner_uv.F MITgcm-checkpoint68i/pkg/debug/debug_enter.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rs.F MITgcm-checkpoint68i/pkg/debug/debug_leave.F MITgcm-checkpoint68i/pkg/debug/debug_msg.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rs.F MITgcm-checkpoint68i/pkg/debug/fill_in_corners_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rs.F MITgcm-checkpoint68i/pkg/diagnostics/ MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_CALC.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_SIZE.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGSTATS_REGIONS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAG_OPTIONS.h MITgcm-checkpoint68i/pkg/diagnostics/diag_calc_psivel.F MITgcm-checkpoint68i/pkg/diagnostics/diag_cg2d.F MITgcm-checkpoint68i/pkg/diagnostics/diag_vegtile_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad.flow MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad_diff.list MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_addtolist.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_calc_phivel.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_field.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_state.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fract_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_early.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_fixed.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_varia.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_p2p.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_vert.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_is_on.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_list_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_main_init.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_read_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_readparms.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_setdiag.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_status_error.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_sum_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_summary.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_switch_onoff.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_utils.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_adj.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ascii_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_close_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_global.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_local.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_others_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_output.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_regions.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_setdiag.F MITgcm-checkpoint68i/pkg/dic/ MITgcm-checkpoint68i/pkg/dic/DIC_ATMOS.h MITgcm-checkpoint68i/pkg/dic/DIC_COST.h MITgcm-checkpoint68i/pkg/dic/DIC_CTRL.h MITgcm-checkpoint68i/pkg/dic/DIC_LOAD.h MITgcm-checkpoint68i/pkg/dic/DIC_OPTIONS.h MITgcm-checkpoint68i/pkg/dic/DIC_VARS.h MITgcm-checkpoint68i/pkg/dic/alk_surfforcing.F MITgcm-checkpoint68i/pkg/dic/bio_export.F MITgcm-checkpoint68i/pkg/dic/calcite_saturation.F MITgcm-checkpoint68i/pkg/dic/car_flux.F MITgcm-checkpoint68i/pkg/dic/car_flux_omega_top.F MITgcm-checkpoint68i/pkg/dic/carbon_chem.F MITgcm-checkpoint68i/pkg/dic/dic_ad.flow MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_diff.list MITgcm-checkpoint68i/pkg/dic/dic_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_diags.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_init.F MITgcm-checkpoint68i/pkg/dic/dic_cost.F MITgcm-checkpoint68i/pkg/dic/dic_diagnostics_init.F MITgcm-checkpoint68i/pkg/dic/dic_fields_load.F MITgcm-checkpoint68i/pkg/dic/dic_fields_update.F MITgcm-checkpoint68i/pkg/dic/dic_ini_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_ini_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_init_fixed.F MITgcm-checkpoint68i/pkg/dic/dic_init_varia.F MITgcm-checkpoint68i/pkg/dic/dic_mnc_init.F MITgcm-checkpoint68i/pkg/dic/dic_read_co2_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_read_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_readparms.F MITgcm-checkpoint68i/pkg/dic/dic_set_control.F MITgcm-checkpoint68i/pkg/dic/dic_solvesaphe.F MITgcm-checkpoint68i/pkg/dic/dic_store_fluxco2.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing_init.F MITgcm-checkpoint68i/pkg/dic/dic_tr_register.F MITgcm-checkpoint68i/pkg/dic/dic_write_pickup.F MITgcm-checkpoint68i/pkg/dic/fe_chem.F MITgcm-checkpoint68i/pkg/dic/insol.F MITgcm-checkpoint68i/pkg/dic/o2_surfforcing.F MITgcm-checkpoint68i/pkg/dic/phos_flux.F MITgcm-checkpoint68i/pkg/down_slope/ MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_OPTIONS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_PARAMS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_SIZE.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_VARS.h MITgcm-checkpoint68i/pkg/down_slope/dwnslp_ad_diff.list MITgcm-checkpoint68i/pkg/down_slope/dwnslp_apply.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_flow.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_rho.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_diagnostics_init.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_fixed.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_varia.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_readparms.F MITgcm-checkpoint68i/pkg/ebm/ MITgcm-checkpoint68i/pkg/ebm/EBM.h MITgcm-checkpoint68i/pkg/ebm/EBM_OPTIONS.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_diff.list MITgcm-checkpoint68i/pkg/ebm/ebm_area_t.F MITgcm-checkpoint68i/pkg/ebm/ebm_atmosphere.F MITgcm-checkpoint68i/pkg/ebm/ebm_driver.F MITgcm-checkpoint68i/pkg/ebm/ebm_ini_vars.F MITgcm-checkpoint68i/pkg/ebm/ebm_load_climatology.F MITgcm-checkpoint68i/pkg/ebm/ebm_readparms.F MITgcm-checkpoint68i/pkg/ebm/ebm_wind_perturb.F MITgcm-checkpoint68i/pkg/ebm/ebm_zonalmean.F MITgcm-checkpoint68i/pkg/ecco/ MITgcm-checkpoint68i/pkg/ecco/ECCO.h MITgcm-checkpoint68i/pkg/ecco/ECCO_OPTIONS.h MITgcm-checkpoint68i/pkg/ecco/ECCO_SIZE.h MITgcm-checkpoint68i/pkg/ecco/cost_averagesfields.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesflags.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesgeneric.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesinit.F MITgcm-checkpoint68i/pkg/ecco/cost_bp_read.F MITgcm-checkpoint68i/pkg/ecco/cost_forcing.F MITgcm-checkpoint68i/pkg/ecco/cost_gencal.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_all.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_assignperiod.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_boxmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_bpv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_customize.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_glbmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_moc.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_seaicev4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sshv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sstv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_transp.F MITgcm-checkpoint68i/pkg/ecco/cost_generic.F MITgcm-checkpoint68i/pkg/ecco/cost_genread.F MITgcm-checkpoint68i/pkg/ecco/cost_hyd.F MITgcm-checkpoint68i/pkg/ecco/cost_internal_params.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs_ageos.F MITgcm-checkpoint68i/pkg/ecco/cost_obcse.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsn.F MITgcm-checkpoint68i/pkg/ecco/cost_obcss.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsvol.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsw.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read_yd.F MITgcm-checkpoint68i/pkg/ecco/cost_ssh.F MITgcm-checkpoint68i/pkg/ecco/ecco_ad.flow MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_diff.list MITgcm-checkpoint68i/pkg/ecco/ecco_check.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost.h MITgcm-checkpoint68i/pkg/ecco/ecco_cost_driver.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_final.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_barfiles.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_weights.F MITgcm-checkpoint68i/pkg/ecco/ecco_diagnostics_init.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_local_params.h MITgcm-checkpoint68i/pkg/ecco/ecco_phys.F MITgcm-checkpoint68i/pkg/ecco/ecco_readparms.F MITgcm-checkpoint68i/pkg/ecco/ecco_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_toolbox.F MITgcm-checkpoint68i/pkg/ecco/stergloh_output.F MITgcm-checkpoint68i/pkg/embed_files/ MITgcm-checkpoint68i/pkg/embed_files/EMBED_FILES_OPTIONS.h MITgcm-checkpoint68i/pkg/embed_files/README.txt MITgcm-checkpoint68i/pkg/embed_files/decode_files.c MITgcm-checkpoint68i/pkg/embed_files/embed_files_init.F MITgcm-checkpoint68i/pkg/exch2/ MITgcm-checkpoint68i/pkg/exch2/Makefile MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_BUFFER.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_PARAMS.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_SIZE.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_TOPOLOGY.h MITgcm-checkpoint68i/pkg/exch2/W2_OPTIONS.h MITgcm-checkpoint68i/pkg/exch2/exch2.flow MITgcm-checkpoint68i/pkg/exch2/exch2_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_diff.list MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_check_depths.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_scal_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_uv_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_s3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_sm_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_agrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_cgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_z_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/w2_cumulsum_z_tile.F MITgcm-checkpoint68i/pkg/exch2/w2_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_eeboot.F MITgcm-checkpoint68i/pkg/exch2/w2_map_procs.F MITgcm-checkpoint68i/pkg/exch2/w2_print_comm_sequence.F MITgcm-checkpoint68i/pkg/exch2/w2_print_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_readparms.F MITgcm-checkpoint68i/pkg/exch2/w2_set_cs6_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_f2f_index.F MITgcm-checkpoint68i/pkg/exch2/w2_set_gen_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_cumsum.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_tiles.F MITgcm-checkpoint68i/pkg/exch2/w2_set_myown_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_single_facet.F MITgcm-checkpoint68i/pkg/exch2/w2_set_tile2tiles.F MITgcm-checkpoint68i/pkg/exf/ MITgcm-checkpoint68i/pkg/exf/EXF_CONSTANTS.h MITgcm-checkpoint68i/pkg/exf/EXF_FIELDS.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_PARAM.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_SIZE.h MITgcm-checkpoint68i/pkg/exf/EXF_OPTIONS.h MITgcm-checkpoint68i/pkg/exf/EXF_PARAM.h MITgcm-checkpoint68i/pkg/exf/TODO.txt MITgcm-checkpoint68i/pkg/exf/exf_ad.flow MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_diff.list MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots__g.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots_ad.F MITgcm-checkpoint68i/pkg/exf/exf_bulkformulae.F MITgcm-checkpoint68i/pkg/exf/exf_check.F MITgcm-checkpoint68i/pkg/exf/exf_check_range.F MITgcm-checkpoint68i/pkg/exf/exf_description.tex MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_fill.F MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_init.F MITgcm-checkpoint68i/pkg/exf/exf_filter_rl.F MITgcm-checkpoint68i/pkg/exf/exf_getclim.F MITgcm-checkpoint68i/pkg/exf/exf_getffield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getffieldrec.F MITgcm-checkpoint68i/pkg/exf/exf_getffields.F MITgcm-checkpoint68i/pkg/exf/exf_getfield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getforcing.F MITgcm-checkpoint68i/pkg/exf/exf_getmonthsrec.F MITgcm-checkpoint68i/pkg/exf/exf_getsurfacefluxes.F MITgcm-checkpoint68i/pkg/exf/exf_getyearlyfieldname.F MITgcm-checkpoint68i/pkg/exf/exf_init_fixed.F MITgcm-checkpoint68i/pkg/exf/exf_init_fld.F MITgcm-checkpoint68i/pkg/exf/exf_init_interp.F MITgcm-checkpoint68i/pkg/exf/exf_init_varia.F MITgcm-checkpoint68i/pkg/exf/exf_interp.F MITgcm-checkpoint68i/pkg/exf/exf_interp_read.F MITgcm-checkpoint68i/pkg/exf/exf_interp_uv.F MITgcm-checkpoint68i/pkg/exf/exf_interpolate.F MITgcm-checkpoint68i/pkg/exf/exf_mapfields.F MITgcm-checkpoint68i/pkg/exf/exf_monitor.F MITgcm-checkpoint68i/pkg/exf/exf_monitor_ad.F MITgcm-checkpoint68i/pkg/exf/exf_radiation.F MITgcm-checkpoint68i/pkg/exf/exf_readparms.F MITgcm-checkpoint68i/pkg/exf/exf_set_fld.F MITgcm-checkpoint68i/pkg/exf/exf_set_gen.F MITgcm-checkpoint68i/pkg/exf/exf_set_obcs.F MITgcm-checkpoint68i/pkg/exf/exf_set_uv.F MITgcm-checkpoint68i/pkg/exf/exf_summary.F MITgcm-checkpoint68i/pkg/exf/exf_swapffields.F MITgcm-checkpoint68i/pkg/exf/exf_weight_sfx_diags.F MITgcm-checkpoint68i/pkg/exf/exf_wind.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle_table.F MITgcm-checkpoint68i/pkg/fizhi/ MITgcm-checkpoint68i/pkg/fizhi/AtoC.F MITgcm-checkpoint68i/pkg/fizhi/CtoA.F MITgcm-checkpoint68i/pkg/fizhi/FIZHI_OPTIONS.h MITgcm-checkpoint68i/pkg/fizhi/cah-dat.h MITgcm-checkpoint68i/pkg/fizhi/cai-dat.h MITgcm-checkpoint68i/pkg/fizhi/chronos.h MITgcm-checkpoint68i/pkg/fizhi/co2-tran3.h MITgcm-checkpoint68i/pkg/fizhi/do_fizhi.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_SHP.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_alarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_chemistry_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_clockstuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagalarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagnostics_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_driver.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_earth_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_fillnegs.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_gwdrag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_chem.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_fixed.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vars.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_veg.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vegsurftiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_io_comms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_lsm.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_lwrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mnc_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_moist.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mpistuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_ocean_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_rayleigh.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_read_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readparms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readwrite_vegtiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_step_diag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_swrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_tendency_apply.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_turb.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_update_time.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_utils.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_wrapper.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_datetime.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_state.F MITgcm-checkpoint68i/pkg/fizhi/getcon.F MITgcm-checkpoint68i/pkg/fizhi/getpwhere.F MITgcm-checkpoint68i/pkg/fizhi/h2o-tran3.h MITgcm-checkpoint68i/pkg/fizhi/o3-tran3.h MITgcm-checkpoint68i/pkg/fizhi/sibber.h MITgcm-checkpoint68i/pkg/fizhi/slprs.F MITgcm-checkpoint68i/pkg/fizhi/snwmid.h MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_corr.F MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_fg.F MITgcm-checkpoint68i/pkg/fizhi/step_physics.F MITgcm-checkpoint68i/pkg/fizhi/update_chemistry_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_earth_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_ocean_exports.F MITgcm-checkpoint68i/pkg/flt/ MITgcm-checkpoint68i/pkg/flt/FLT.h MITgcm-checkpoint68i/pkg/flt/FLT_BUFF.h MITgcm-checkpoint68i/pkg/flt/FLT_OPTIONS.h MITgcm-checkpoint68i/pkg/flt/FLT_SIZE.h MITgcm-checkpoint68i/pkg/flt/README.flt MITgcm-checkpoint68i/pkg/flt/exch2_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch2_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/exch_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/flt_down.F MITgcm-checkpoint68i/pkg/flt/flt_exch2.F MITgcm-checkpoint68i/pkg/flt/flt_exchg.F MITgcm-checkpoint68i/pkg/flt/flt_init_fixed.F MITgcm-checkpoint68i/pkg/flt/flt_init_varia.F MITgcm-checkpoint68i/pkg/flt/flt_interp_linear.F MITgcm-checkpoint68i/pkg/flt/flt_main.F MITgcm-checkpoint68i/pkg/flt/flt_mapping.F MITgcm-checkpoint68i/pkg/flt/flt_readparms.F MITgcm-checkpoint68i/pkg/flt/flt_runga2.F MITgcm-checkpoint68i/pkg/flt/flt_runga4.F MITgcm-checkpoint68i/pkg/flt/flt_traj.F MITgcm-checkpoint68i/pkg/flt/flt_up.F MITgcm-checkpoint68i/pkg/flt/flt_write_pickup.F MITgcm-checkpoint68i/pkg/frazil/ MITgcm-checkpoint68i/pkg/frazil/FRAZIL.h MITgcm-checkpoint68i/pkg/frazil/FRAZIL_OPTIONS.h MITgcm-checkpoint68i/pkg/frazil/frazil_ad.flow MITgcm-checkpoint68i/pkg/frazil/frazil_ad_diff.list MITgcm-checkpoint68i/pkg/frazil/frazil_calc_rhs.F MITgcm-checkpoint68i/pkg/frazil/frazil_description.tex MITgcm-checkpoint68i/pkg/frazil/frazil_diagnostics_init.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_fixed.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_varia.F MITgcm-checkpoint68i/pkg/frazil/frazil_tendency_apply.F MITgcm-checkpoint68i/pkg/gchem/ MITgcm-checkpoint68i/pkg/gchem/GCHEM.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_FIELDS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_OPTIONS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_SIZE.h MITgcm-checkpoint68i/pkg/gchem/gchem_ad_diff.list MITgcm-checkpoint68i/pkg/gchem/gchem_add_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_calc_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_check.F MITgcm-checkpoint68i/pkg/gchem/gchem_diagnostics_init.F MITgcm-checkpoint68i/pkg/gchem/gchem_fields_load.F MITgcm-checkpoint68i/pkg/gchem/gchem_forcing_sep.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_fixed.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_vari.F MITgcm-checkpoint68i/pkg/gchem/gchem_output.F MITgcm-checkpoint68i/pkg/gchem/gchem_readparms.F MITgcm-checkpoint68i/pkg/gchem/gchem_surfmean.F MITgcm-checkpoint68i/pkg/gchem/gchem_tr_register.F MITgcm-checkpoint68i/pkg/gchem/gchem_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/ MITgcm-checkpoint68i/pkg/generic_advdiff/GAD.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_FLUX_LIMITER.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_OPTIONS.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_SOM_VARS.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_diff.list MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advection.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advscheme.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_calc_rhs.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_check.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_del2.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_init.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_state.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_exch_som.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_implicit_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_fixed.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_varia.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_plm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_read_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_advect.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_exchanges.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_fill_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_lim_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_prep_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3c4_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/generic_advdiff.tex MITgcm-checkpoint68i/pkg/generic_advdiff/salt_fill.F MITgcm-checkpoint68i/pkg/ggl90/ MITgcm-checkpoint68i/pkg/ggl90/GGL90.h MITgcm-checkpoint68i/pkg/ggl90/GGL90_OPTIONS.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_diff.list MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_diff.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_visc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_check.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_diagnostics_init.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_exchanges.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_idemix.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_fixed.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_varia.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_output.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_read_pickup.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_readparms.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/ MITgcm-checkpoint68i/pkg/gmredi/GMREDI.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_OPTIONS.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_TAVE.h MITgcm-checkpoint68i/pkg/gmredi/README_ADJOINT MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad.flow MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad_diff.list MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_bates_k.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_diff.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_eigs.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_b.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_bvp.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_qgleith.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_tensor.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_urms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_check.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_description.tex MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_fill.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_impl.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_do_exch.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_fixed.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_varia.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_mnc_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_output.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_read_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_readparms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_residual_flow.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_rtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_limit.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_psi.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_xtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_ytransport.F MITgcm-checkpoint68i/pkg/gmredi/submeso_calc_psi.F MITgcm-checkpoint68i/pkg/grdchk/ MITgcm-checkpoint68i/pkg/grdchk/GRDCHK_OPTIONS.h MITgcm-checkpoint68i/pkg/grdchk/grdchk.h MITgcm-checkpoint68i/pkg/grdchk/grdchk_check.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_description.tex MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_obcs_mask.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_position.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getadxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_init.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_loc.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_main.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_print.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_readparms.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_setxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_summary.F MITgcm-checkpoint68i/pkg/gridalt/ MITgcm-checkpoint68i/pkg/gridalt/GRIDALT_OPTIONS.h MITgcm-checkpoint68i/pkg/gridalt/dyn2phys.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_diagnostics_init.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_initialise.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_mapping.h MITgcm-checkpoint68i/pkg/gridalt/gridalt_update.F MITgcm-checkpoint68i/pkg/gridalt/make_phys_grid.F MITgcm-checkpoint68i/pkg/gridalt/phys2dyn.F MITgcm-checkpoint68i/pkg/icefront/ MITgcm-checkpoint68i/pkg/icefront/ICEFRONT.h MITgcm-checkpoint68i/pkg/icefront/ICEFRONT_OPTIONS.h MITgcm-checkpoint68i/pkg/icefront/ICFSymbol.txt MITgcm-checkpoint68i/pkg/icefront/icefront_check.F MITgcm-checkpoint68i/pkg/icefront/icefront_description.tex MITgcm-checkpoint68i/pkg/icefront/icefront_diagnostics_init.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_fixed.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_varia.F MITgcm-checkpoint68i/pkg/icefront/icefront_readparms.F MITgcm-checkpoint68i/pkg/icefront/icefront_tendency_apply.F MITgcm-checkpoint68i/pkg/icefront/icefront_thermodynamics.F MITgcm-checkpoint68i/pkg/kl10/ MITgcm-checkpoint68i/pkg/kl10/KL10.h MITgcm-checkpoint68i/pkg/kl10/KL10_DIAGS.h MITgcm-checkpoint68i/pkg/kl10/KL10_OPTIONS.h MITgcm-checkpoint68i/pkg/kl10/KL10_TAVE.h MITgcm-checkpoint68i/pkg/kl10/kl10_calc.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_diff.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_visc.F MITgcm-checkpoint68i/pkg/kl10/kl10_check.F MITgcm-checkpoint68i/pkg/kl10/kl10_diagnostics_init.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_fixed.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_varia.F MITgcm-checkpoint68i/pkg/kl10/kl10_output.F MITgcm-checkpoint68i/pkg/kl10/kl10_readparms.F MITgcm-checkpoint68i/pkg/kpp/ MITgcm-checkpoint68i/pkg/kpp/KPP.h MITgcm-checkpoint68i/pkg/kpp/KPP_OPTIONS.h MITgcm-checkpoint68i/pkg/kpp/KPP_PARAMS.h MITgcm-checkpoint68i/pkg/kpp/KPP_TAVE.h MITgcm-checkpoint68i/pkg/kpp/kpp_ad_diff.list MITgcm-checkpoint68i/pkg/kpp/kpp_calc.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_t.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_visc.F MITgcm-checkpoint68i/pkg/kpp/kpp_check.F MITgcm-checkpoint68i/pkg/kpp/kpp_description.tex MITgcm-checkpoint68i/pkg/kpp/kpp_diagnostics_init.F MITgcm-checkpoint68i/pkg/kpp/kpp_do_exch.F MITgcm-checkpoint68i/pkg/kpp/kpp_forcing_surf.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_fixed.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_varia.F MITgcm-checkpoint68i/pkg/kpp/kpp_output.F MITgcm-checkpoint68i/pkg/kpp/kpp_readparms.F MITgcm-checkpoint68i/pkg/kpp/kpp_routines.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_t.F MITgcm-checkpoint68i/pkg/land/ MITgcm-checkpoint68i/pkg/land/LAND_OPTIONS.h MITgcm-checkpoint68i/pkg/land/LAND_PARAMS.h MITgcm-checkpoint68i/pkg/land/LAND_SIZE.h MITgcm-checkpoint68i/pkg/land/LAND_TAVE.h MITgcm-checkpoint68i/pkg/land/LAND_VARS.h MITgcm-checkpoint68i/pkg/land/land_albedo.F MITgcm-checkpoint68i/pkg/land/land_check.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_init.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_state.F MITgcm-checkpoint68i/pkg/land/land_do_diags.F MITgcm-checkpoint68i/pkg/land/land_impl_temp.F MITgcm-checkpoint68i/pkg/land/land_ini_vars.F MITgcm-checkpoint68i/pkg/land/land_init_fixed.F MITgcm-checkpoint68i/pkg/land/land_mnc_init.F MITgcm-checkpoint68i/pkg/land/land_monitor.F MITgcm-checkpoint68i/pkg/land/land_output.F MITgcm-checkpoint68i/pkg/land/land_read_pickup.F MITgcm-checkpoint68i/pkg/land/land_readparms.F MITgcm-checkpoint68i/pkg/land/land_stepfwd.F MITgcm-checkpoint68i/pkg/land/land_write_pickup.F MITgcm-checkpoint68i/pkg/layers/ MITgcm-checkpoint68i/pkg/layers/LAYERS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_OPTIONS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_SIZE.h MITgcm-checkpoint68i/pkg/layers/layers_ad_diff.list MITgcm-checkpoint68i/pkg/layers/layers_calc.F MITgcm-checkpoint68i/pkg/layers/layers_check.F MITgcm-checkpoint68i/pkg/layers/layers_diagnostics_init.F MITgcm-checkpoint68i/pkg/layers/layers_fluxcalc.F MITgcm-checkpoint68i/pkg/layers/layers_init_fixed.F MITgcm-checkpoint68i/pkg/layers/layers_init_varia.F MITgcm-checkpoint68i/pkg/layers/layers_mnc_init.F MITgcm-checkpoint68i/pkg/layers/layers_output.F MITgcm-checkpoint68i/pkg/layers/layers_readparms.F MITgcm-checkpoint68i/pkg/layers/layers_save.F MITgcm-checkpoint68i/pkg/layers/layers_thermodynamics.F MITgcm-checkpoint68i/pkg/layers/layers_wsurf_tr.F MITgcm-checkpoint68i/pkg/longstep/ MITgcm-checkpoint68i/pkg/longstep/LONGSTEP.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_OPTIONS.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_PARAMS.h MITgcm-checkpoint68i/pkg/longstep/README MITgcm-checkpoint68i/pkg/longstep/longstep_average.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_check_iters.F MITgcm-checkpoint68i/pkg/longstep/longstep_correction_step.F MITgcm-checkpoint68i/pkg/longstep/longstep_diagnostics_init.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_rs.F MITgcm-checkpoint68i/pkg/longstep/longstep_forcing_surf.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_fixed.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_varia.F MITgcm-checkpoint68i/pkg/longstep/longstep_readparms.F MITgcm-checkpoint68i/pkg/longstep/longstep_reset_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_thermodynamics.F MITgcm-checkpoint68i/pkg/matrix/ MITgcm-checkpoint68i/pkg/matrix/MATRIX.h MITgcm-checkpoint68i/pkg/matrix/MATRIX_OPTIONS.h MITgcm-checkpoint68i/pkg/matrix/matrix_init_varia.F MITgcm-checkpoint68i/pkg/matrix/matrix_output.F MITgcm-checkpoint68i/pkg/matrix/matrix_readparms.F MITgcm-checkpoint68i/pkg/matrix/matrix_store_tendency.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_grid.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_tendency.F MITgcm-checkpoint68i/pkg/mdsio/ MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_3D.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_WH.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_OPTIONS.h MITgcm-checkpoint68i/pkg/mdsio/mdsio_ad.flow MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertorl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_check4file.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_facef_read.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_readvec_loc.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_segxtorx_2d.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_metafiles.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writelocal.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writevec_loc.F MITgcm-checkpoint68i/pkg/mnc/ MITgcm-checkpoint68i/pkg/mnc/CPP_OPTIONS.t MITgcm-checkpoint68i/pkg/mnc/MNC_BUFF.h MITgcm-checkpoint68i/pkg/mnc/MNC_COMMON.h MITgcm-checkpoint68i/pkg/mnc/MNC_OPTIONS.h MITgcm-checkpoint68i/pkg/mnc/MNC_PARAMS.h MITgcm-checkpoint68i/pkg/mnc/MNC_SIZE.h MITgcm-checkpoint68i/pkg/mnc/Makefile MITgcm-checkpoint68i/pkg/mnc/PACKAGES_CONFIG.t MITgcm-checkpoint68i/pkg/mnc/README.txt MITgcm-checkpoint68i/pkg/mnc/SIZE.t MITgcm-checkpoint68i/pkg/mnc/TESTING_README.txt MITgcm-checkpoint68i/pkg/mnc/build_netcdf_stubs MITgcm-checkpoint68i/pkg/mnc/mnc_ad.flow MITgcm-checkpoint68i/pkg/mnc/mnc_create_dir.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_citer.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_cvars.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_fsize.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_missingvals.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_model_attr.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_readwrite.template MITgcm-checkpoint68i/pkg/mnc/mnc_cw_udim.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_write_grid_info.F MITgcm-checkpoint68i/pkg/mnc/mnc_cwrapper.F MITgcm-checkpoint68i/pkg/mnc/mnc_description.tex MITgcm-checkpoint68i/pkg/mnc/mnc_dim.F MITgcm-checkpoint68i/pkg/mnc/mnc_dump.F MITgcm-checkpoint68i/pkg/mnc/mnc_file.F MITgcm-checkpoint68i/pkg/mnc/mnc_grid.F MITgcm-checkpoint68i/pkg/mnc/mnc_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_readparms.F MITgcm-checkpoint68i/pkg/mnc/mnc_test_001.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_002.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_utils.T MITgcm-checkpoint68i/pkg/mnc/mnc_update_time.F MITgcm-checkpoint68i/pkg/mnc/mnc_utils.F MITgcm-checkpoint68i/pkg/mnc/mnc_var.F MITgcm-checkpoint68i/pkg/mnc/parse_local_info MITgcm-checkpoint68i/pkg/mnc/pre-defined_grids.txt MITgcm-checkpoint68i/pkg/mom_common/ MITgcm-checkpoint68i/pkg/mom_common/MOM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_common/MOM_VISC.h MITgcm-checkpoint68i/pkg/mom_common/mom_calc_3d_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_absvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hdiv.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hfacz.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_ke.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_relvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_tension.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_visc.F MITgcm-checkpoint68i/pkg/mom_common/mom_common_ad_diff.list MITgcm-checkpoint68i/pkg/mom_common/mom_diagnostics_init.F MITgcm-checkpoint68i/pkg/mom_common/mom_hdissip.F MITgcm-checkpoint68i/pkg/mom_common/mom_init_fixed.F MITgcm-checkpoint68i/pkg/mom_common/mom_quasihydrostatic.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_uv_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_limit.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_stretch.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_smag_3d.F MITgcm-checkpoint68i/pkg/mom_fluxform/ MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM.h MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_fluxform/mom_calc_rtrans.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform_ad_diff.list MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_uu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_vu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_wu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_del2u.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_yviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_uv_boundary.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_uv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_vv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_wv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_del2v.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_yviscflux.F MITgcm-checkpoint68i/pkg/mom_vecinv/ MITgcm-checkpoint68i/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv_ad_diff.list MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_del2uv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_hdissip.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_vertshear.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_vertshear.F MITgcm-checkpoint68i/pkg/monitor/ MITgcm-checkpoint68i/pkg/monitor/MONITOR.h MITgcm-checkpoint68i/pkg/monitor/MONITOR_OPTIONS.h MITgcm-checkpoint68i/pkg/monitor/mon_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw2.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_description.tex MITgcm-checkpoint68i/pkg/monitor/mon_init.F MITgcm-checkpoint68i/pkg/monitor/mon_ke.F MITgcm-checkpoint68i/pkg/monitor/mon_out.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_set_iounit.F MITgcm-checkpoint68i/pkg/monitor/mon_set_pref.F MITgcm-checkpoint68i/pkg/monitor/mon_solution.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_latbnd_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_surfcor.F MITgcm-checkpoint68i/pkg/monitor/mon_vort3.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rs.F MITgcm-checkpoint68i/pkg/monitor/monitor.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.flow MITgcm-checkpoint68i/pkg/monitor/monitor_description.tex MITgcm-checkpoint68i/pkg/monitor/monitor_g.F MITgcm-checkpoint68i/pkg/my82/ MITgcm-checkpoint68i/pkg/my82/MY82.h MITgcm-checkpoint68i/pkg/my82/MY82_OPTIONS.h MITgcm-checkpoint68i/pkg/my82/my82_calc.F MITgcm-checkpoint68i/pkg/my82/my82_calc_diff.F MITgcm-checkpoint68i/pkg/my82/my82_calc_visc.F MITgcm-checkpoint68i/pkg/my82/my82_check.F MITgcm-checkpoint68i/pkg/my82/my82_diagnostics_init.F MITgcm-checkpoint68i/pkg/my82/my82_init_fixed.F MITgcm-checkpoint68i/pkg/my82/my82_init_varia.F MITgcm-checkpoint68i/pkg/my82/my82_output.F MITgcm-checkpoint68i/pkg/my82/my82_readparms.F MITgcm-checkpoint68i/pkg/my82/my82_ri_number.F MITgcm-checkpoint68i/pkg/mypackage/ MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE.h MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE_OPTIONS.h MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad.flow MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad_diff.list MITgcm-checkpoint68i/pkg/mypackage/mypackage_calc_rhs.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_check.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_description.tex MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_state.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_fixed.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_varia.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_mnc_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_read_pickup.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_readparms.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_tendency_apply.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/ MITgcm-checkpoint68i/pkg/obcs/OBCS_FIELDS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_GRID.h MITgcm-checkpoint68i/pkg/obcs/OBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PARAMS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PTRACERS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_SEAICE.h MITgcm-checkpoint68i/pkg/obcs/ORLANSKI.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad.flow MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_diff.list MITgcm-checkpoint68i/pkg/obcs/obcs_add_tides.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_eta.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ptracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_r_star.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_seaice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_surf_dr.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ts.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uv.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_w.F MITgcm-checkpoint68i/pkg/obcs/obcs_balance_flow.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc_stevens.F MITgcm-checkpoint68i/pkg/obcs/obcs_check.F MITgcm-checkpoint68i/pkg/obcs/obcs_check_depths.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_description.tex MITgcm-checkpoint68i/pkg/obcs/obcs_diag_balance.F MITgcm-checkpoint68i/pkg/obcs/obcs_exchanges.F MITgcm-checkpoint68i/pkg/obcs/obcs_exf_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_fields_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_fixed.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_variables.F MITgcm-checkpoint68i/pkg/obcs/obcs_mon_stats.F MITgcm-checkpoint68i/pkg/obcs/obcs_monitor.F MITgcm-checkpoint68i/pkg/obcs/obcs_output.F MITgcm-checkpoint68i/pkg/obcs/obcs_prescribe_read.F MITgcm-checkpoint68i/pkg/obcs/obcs_read_pickup.F MITgcm-checkpoint68i/pkg/obcs/obcs_readparms.F MITgcm-checkpoint68i/pkg/obcs/obcs_save_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_seaice_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_set_connect.F MITgcm-checkpoint68i/pkg/obcs/obcs_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_u1_adv_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/orlanski_east.F MITgcm-checkpoint68i/pkg/obcs/orlanski_init.F MITgcm-checkpoint68i/pkg/obcs/orlanski_north.F MITgcm-checkpoint68i/pkg/obcs/orlanski_south.F MITgcm-checkpoint68i/pkg/obcs/orlanski_west.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_TAVE.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCNCPL.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCN_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_apply_import.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_check_cplconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_diags.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_ocnconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_atmconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_store_my_data.F MITgcm-checkpoint68i/pkg/offline/ MITgcm-checkpoint68i/pkg/offline/OFFLINE.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_OPTIONS.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_SWITCH.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_diff.list MITgcm-checkpoint68i/pkg/offline/offline_check.F MITgcm-checkpoint68i/pkg/offline/offline_fields_load.F MITgcm-checkpoint68i/pkg/offline/offline_get_diffus.F MITgcm-checkpoint68i/pkg/offline/offline_init_varia.F MITgcm-checkpoint68i/pkg/offline/offline_readparms.F MITgcm-checkpoint68i/pkg/offline/offline_reset_parms.F MITgcm-checkpoint68i/pkg/openad/ MITgcm-checkpoint68i/pkg/openad/OPENAD_OPTIONS.h MITgcm-checkpoint68i/pkg/openad/ad_s_different_multiple.F MITgcm-checkpoint68i/pkg/openad/ad_s_ifnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_ilnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_mds_reclen.F MITgcm-checkpoint68i/pkg/openad/externalDummies.F MITgcm-checkpoint68i/pkg/openad/findAndDiff.bash MITgcm-checkpoint68i/pkg/openad/inner_do_loop.F MITgcm-checkpoint68i/pkg/openad/openad_ad_diff.list MITgcm-checkpoint68i/pkg/openad/openad_checkpointInit.F MITgcm-checkpoint68i/pkg/openad/openad_dumpAdjoint.F MITgcm-checkpoint68i/pkg/openad/seawater.F MITgcm-checkpoint68i/pkg/openad/the_model_main.F MITgcm-checkpoint68i/pkg/opps/ MITgcm-checkpoint68i/pkg/opps/OPPS.h MITgcm-checkpoint68i/pkg/opps/OPPS_OPTIONS.h MITgcm-checkpoint68i/pkg/opps/opps_calc.F MITgcm-checkpoint68i/pkg/opps/opps_check.F MITgcm-checkpoint68i/pkg/opps/opps_init.F MITgcm-checkpoint68i/pkg/opps/opps_interface.F MITgcm-checkpoint68i/pkg/opps/opps_readparms.F MITgcm-checkpoint68i/pkg/pkg_depend MITgcm-checkpoint68i/pkg/pkg_groups MITgcm-checkpoint68i/pkg/pp81/ MITgcm-checkpoint68i/pkg/pp81/PP81.h MITgcm-checkpoint68i/pkg/pp81/PP81_OPTIONS.h MITgcm-checkpoint68i/pkg/pp81/pp81_calc.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_diff.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_visc.F MITgcm-checkpoint68i/pkg/pp81/pp81_check.F MITgcm-checkpoint68i/pkg/pp81/pp81_diagnostics_init.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_fixed.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_varia.F MITgcm-checkpoint68i/pkg/pp81/pp81_output.F MITgcm-checkpoint68i/pkg/pp81/pp81_readparms.F MITgcm-checkpoint68i/pkg/pp81/pp81_ri_number.F MITgcm-checkpoint68i/pkg/profiles/ MITgcm-checkpoint68i/pkg/profiles/PROFILES_OPTIONS.h MITgcm-checkpoint68i/pkg/profiles/PROFILES_SIZE.h MITgcm-checkpoint68i/pkg/profiles/active_file_control_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.flow MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_ad.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_g.F MITgcm-checkpoint68i/pkg/profiles/cost_profiles.F MITgcm-checkpoint68i/pkg/profiles/profiles.flow MITgcm-checkpoint68i/pkg/profiles/profiles.h MITgcm-checkpoint68i/pkg/profiles/profiles_ad_diff.list MITgcm-checkpoint68i/pkg/profiles/profiles_findunit.F MITgcm-checkpoint68i/pkg/profiles/profiles_ini_io.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_fixed.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_ncfile.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_varia.F MITgcm-checkpoint68i/pkg/profiles/profiles_inloop.F MITgcm-checkpoint68i/pkg/profiles/profiles_interp.F MITgcm-checkpoint68i/pkg/profiles/profiles_readparms.F MITgcm-checkpoint68i/pkg/profiles/profiles_readvector.F MITgcm-checkpoint68i/pkg/ptracers/ MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_FIELDS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_MOD.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_OPTIONS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_PARAMS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_SIZE.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_START.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_TAVE.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad.flow MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_diff.list MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_dump.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_adcommon.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_apply_forcing.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_calc_wsurf_tr.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_convect.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_debug.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_data_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_fields_blocking_exch.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_forcing_surf.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_fixed.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_varia.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_integrate.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_mnc_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor_ad.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_output.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_read_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_readparms.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_reset.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_set_iolabel.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_switch_onoff.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_turnoff_io.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_zonal_filt_apply.F MITgcm-checkpoint68i/pkg/rbcs/ MITgcm-checkpoint68i/pkg/rbcs/RBCS_FIELDS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_PARAMS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_SIZE.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_diff.list MITgcm-checkpoint68i/pkg/rbcs/rbcs_add_tendency.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_fields_load.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_fixed.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_varia.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_readparms.F MITgcm-checkpoint68i/pkg/regrid/ MITgcm-checkpoint68i/pkg/regrid/Makefile MITgcm-checkpoint68i/pkg/regrid/REGRID.h MITgcm-checkpoint68i/pkg/regrid/REGRID_OPTIONS.h MITgcm-checkpoint68i/pkg/regrid/REGRID_SIZE.h MITgcm-checkpoint68i/pkg/regrid/regrid_check.F MITgcm-checkpoint68i/pkg/regrid/regrid_description.tex MITgcm-checkpoint68i/pkg/regrid/regrid_init_fixed.F MITgcm-checkpoint68i/pkg/regrid/regrid_init_varia.F MITgcm-checkpoint68i/pkg/regrid/regrid_mnc_init.F MITgcm-checkpoint68i/pkg/regrid/regrid_readparms.F MITgcm-checkpoint68i/pkg/regrid/regrid_scalar_out.template MITgcm-checkpoint68i/pkg/runclock/ MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK.h MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK_OPTIONS.h MITgcm-checkpoint68i/pkg/runclock/runclock_check.F MITgcm-checkpoint68i/pkg/runclock/runclock_continue.F MITgcm-checkpoint68i/pkg/runclock/runclock_gettime.F MITgcm-checkpoint68i/pkg/runclock/runclock_init.F MITgcm-checkpoint68i/pkg/runclock/runclock_readparms.F MITgcm-checkpoint68i/pkg/rw/ MITgcm-checkpoint68i/pkg/rw/RW_MFLDS.h MITgcm-checkpoint68i/pkg/rw/RW_OPTIONS.h MITgcm-checkpoint68i/pkg/rw/get_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/read_mflds.F MITgcm-checkpoint68i/pkg/rw/read_rec.F MITgcm-checkpoint68i/pkg/rw/rw_ad.flow MITgcm-checkpoint68i/pkg/rw/rw_ad_diff.list MITgcm-checkpoint68i/pkg/rw/rw_get_suffix.F MITgcm-checkpoint68i/pkg/rw/set_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/write_local_rl.F MITgcm-checkpoint68i/pkg/rw/write_local_rs.F MITgcm-checkpoint68i/pkg/rw/write_rec.F MITgcm-checkpoint68i/pkg/salt_plume/ MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME.h MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME_OPTIONS.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_diff.list MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_apply.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_calc_depth.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_check.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_description.tex MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_fill.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_do_exch.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_forcing_surf.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_frac.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_fixed.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_varia.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_mnc_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_readparms.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_s.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_t.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_volfrac.F MITgcm-checkpoint68i/pkg/sbo/ MITgcm-checkpoint68i/pkg/sbo/SBO.h MITgcm-checkpoint68i/pkg/sbo/SBO_OPTIONS.h MITgcm-checkpoint68i/pkg/sbo/sbo_calc.F MITgcm-checkpoint68i/pkg/sbo/sbo_check.F MITgcm-checkpoint68i/pkg/sbo/sbo_description.tex MITgcm-checkpoint68i/pkg/sbo/sbo_output.F MITgcm-checkpoint68i/pkg/sbo/sbo_readparms.F MITgcm-checkpoint68i/pkg/sbo/sbo_rho.F MITgcm-checkpoint68i/pkg/seaice/ MITgcm-checkpoint68i/pkg/seaice/SEAICE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_COST.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_OPTIONS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_PARAMS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_SIZE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TAVE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TRACER.h MITgcm-checkpoint68i/pkg/seaice/advect.F MITgcm-checkpoint68i/pkg/seaice/cost_ice_test.F MITgcm-checkpoint68i/pkg/seaice/diffus.F MITgcm-checkpoint68i/pkg/seaice/dynsolver.F MITgcm-checkpoint68i/pkg/seaice/lsr.F MITgcm-checkpoint68i/pkg/seaice/ostres.F MITgcm-checkpoint68i/pkg/seaice/seaice.flow MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_diff.list MITgcm-checkpoint68i/pkg/seaice/seaice_ad_dump.F MITgcm-checkpoint68i/pkg/seaice/seaice_advdiff.F MITgcm-checkpoint68i/pkg/seaice/seaice_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_bottomdrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_budget_ocean.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_ice_strength.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_lhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_residual.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_rhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_strainrates.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_stressdiv.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_viscosities.F MITgcm-checkpoint68i/pkg/seaice/seaice_check.F MITgcm-checkpoint68i/pkg/seaice/seaice_check_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_areasst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_concentration.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_driver.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_export.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_final.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sensi.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sss.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_weights.F MITgcm-checkpoint68i/pkg/seaice/seaice_ctrl_map_ini.F MITgcm-checkpoint68i/pkg/seaice/seaice_description.tex MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_state.F MITgcm-checkpoint68i/pkg/seaice/seaice_diffusion.F MITgcm-checkpoint68i/pkg/seaice/seaice_do_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_dynsolver.F MITgcm-checkpoint68i/pkg/seaice/seaice_evp.F MITgcm-checkpoint68i/pkg/seaice/seaice_fake.F MITgcm-checkpoint68i/pkg/seaice/seaice_fgmres.F MITgcm-checkpoint68i/pkg/seaice/seaice_freedrift.F MITgcm-checkpoint68i/pkg/seaice/seaice_get_dynforcing.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth_adx.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_redist.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_remap.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_sum.F MITgcm-checkpoint68i/pkg/seaice/seaice_jacvec.F MITgcm-checkpoint68i/pkg/seaice/seaice_jfnk.F MITgcm-checkpoint68i/pkg/seaice/seaice_krylov.F MITgcm-checkpoint68i/pkg/seaice/seaice_lsr.F MITgcm-checkpoint68i/pkg/seaice/seaice_map_thsice.F MITgcm-checkpoint68i/pkg/seaice/seaice_mnc_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_model.F MITgcm-checkpoint68i/pkg/seaice/seaice_mom_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor_ad.F MITgcm-checkpoint68i/pkg/seaice/seaice_obcs_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_ocean_stress.F MITgcm-checkpoint68i/pkg/seaice/seaice_oceandrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_preconditioner.F MITgcm-checkpoint68i/pkg/seaice/seaice_prepare_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_read_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_readparms.F MITgcm-checkpoint68i/pkg/seaice/seaice_reg_ridge.F MITgcm-checkpoint68i/pkg/seaice/seaice_solve4temp.F MITgcm-checkpoint68i/pkg/seaice/seaice_summary.F MITgcm-checkpoint68i/pkg/seaice/seaice_tracer_phys.F MITgcm-checkpoint68i/pkg/seaice/seaice_turnoff_io.F MITgcm-checkpoint68i/pkg/seaice/seaice_write_pickup.F MITgcm-checkpoint68i/pkg/shap_filt/ MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT.h MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_ad_diff.list MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_ts.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_uv.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_computvort.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_diagnostics_init.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_init_fixed.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_readparms.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_relvort3.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracerold.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_u.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2c.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_v.F MITgcm-checkpoint68i/pkg/shelfice/ MITgcm-checkpoint68i/pkg/shelfice/SHELFICE.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_COST.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_OPTIONS.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_TAVE.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_diff.list MITgcm-checkpoint68i/pkg/shelfice/shelfice_check.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_accumulate.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_final.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_shifwflx.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_diagnostics_drag.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing_surf.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_depths.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_fixed.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_varia.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mask_seaice.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mnc_init.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_output.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_read_pickup.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_readparms.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_c_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_calc_w.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_state.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_uv_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remeshing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_step_icemass.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_thermodynamics.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_u_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_v_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_write_pickup.F MITgcm-checkpoint68i/pkg/showflops/ MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_INIT.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_OPTIONS.h MITgcm-checkpoint68i/pkg/showflops/showflops_ad.flow MITgcm-checkpoint68i/pkg/showflops/showflops_init.F MITgcm-checkpoint68i/pkg/showflops/showflops_inloop.F MITgcm-checkpoint68i/pkg/showflops/showflops_insolve.F MITgcm-checkpoint68i/pkg/smooth/ MITgcm-checkpoint68i/pkg/smooth/SMOOTH.h MITgcm-checkpoint68i/pkg/smooth/SMOOTH_OPTIONS.h MITgcm-checkpoint68i/pkg/smooth/smooth2d.F MITgcm-checkpoint68i/pkg/smooth/smooth3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_ad_diff.list MITgcm-checkpoint68i/pkg/smooth/smooth_basic2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_check.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2dw.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_description.tex MITgcm-checkpoint68i/pkg/smooth/smooth_diff2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_diff3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_hetero2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_impldiff.F MITgcm-checkpoint68i/pkg/smooth/smooth_init2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_fixed.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_varia.F MITgcm-checkpoint68i/pkg/smooth/smooth_readparms.F MITgcm-checkpoint68i/pkg/smooth/smooth_rhs.F MITgcm-checkpoint68i/pkg/sphere/ MITgcm-checkpoint68i/pkg/sphere/exch_all_2d_rl.F MITgcm-checkpoint68i/pkg/sphere/sphere.F MITgcm-checkpoint68i/pkg/sphere/sphere.h MITgcm-checkpoint68i/pkg/sphere/sphere_ad.flow MITgcm-checkpoint68i/pkg/sphere/sphere_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/ MITgcm-checkpoint68i/pkg/streamice/STREAMICE.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_ADV.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_BDRY.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CG.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CTRL_FLUX.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_OPTIONS.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_PETSC.h MITgcm-checkpoint68i/pkg/streamice/adstreamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/adstreamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_prime_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice_prime.F MITgcm-checkpoint68i/pkg/streamice/phi_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/slope_limiter.F MITgcm-checkpoint68i/pkg/streamice/streamice.flow MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_x.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_y.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_front.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_2dtracer.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_thickness.F MITgcm-checkpoint68i/pkg/streamice/streamice_apply_flux_ctrl.F MITgcm-checkpoint68i/pkg/streamice/streamice_bstress_exponent.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_functions.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_matfree.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_wrapper.F MITgcm-checkpoint68i/pkg/streamice/streamice_check.F MITgcm-checkpoint68i/pkg/streamice/streamice_cost_surf_accum.F MITgcm-checkpoint68i/pkg/streamice/streamice_diagnostics_state.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_fd.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_ppm.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump_ad.F MITgcm-checkpoint68i/pkg/streamice/streamice_fields_load.F MITgcm-checkpoint68i/pkg/streamice/streamice_finalize_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_forced_buttress.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_fp_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_fp_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_diagnostics.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_fixed.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_varia.F MITgcm-checkpoint68i/pkg/streamice/streamice_initialise_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/streamice_petsc_numerate.F MITgcm-checkpoint68i/pkg/streamice/streamice_petscmatdestroy.F MITgcm-checkpoint68i/pkg/streamice/streamice_read_pickup.F MITgcm-checkpoint68i/pkg/streamice/streamice_readparms.F MITgcm-checkpoint68i/pkg/streamice/streamice_taub.F MITgcm-checkpoint68i/pkg/streamice/streamice_timestep.F MITgcm-checkpoint68i/pkg/streamice/streamice_tridiag_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_upd_ffrac_uncoupled.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phistage.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve_openad.F MITgcm-checkpoint68i/pkg/streamice/streamice_velmask_upd.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta_hybrid.F MITgcm-checkpoint68i/pkg/streamice/streamice_write_pickup.F MITgcm-checkpoint68i/pkg/thsice/ MITgcm-checkpoint68i/pkg/thsice/THSICE_COST.h MITgcm-checkpoint68i/pkg/thsice/THSICE_DEBUG.h MITgcm-checkpoint68i/pkg/thsice/THSICE_OPTIONS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_PARAMS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_SIZE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_TAVE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_VARS.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad.flow MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_diff.list MITgcm-checkpoint68i/pkg/thsice/thsice_advdiff.F MITgcm-checkpoint68i/pkg/thsice/thsice_advection.F MITgcm-checkpoint68i/pkg/thsice/thsice_albedo.F MITgcm-checkpoint68i/pkg/thsice/thsice_ave.F MITgcm-checkpoint68i/pkg/thsice/thsice_balance_frw.F MITgcm-checkpoint68i/pkg/thsice/thsice_calc_thickn.F MITgcm-checkpoint68i/pkg/thsice/thsice_check.F MITgcm-checkpoint68i/pkg/thsice/thsice_check_conserv.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_driver.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_final.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_init_varia.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_test.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_state.F MITgcm-checkpoint68i/pkg/thsice/thsice_diffusion.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_advect.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_exch.F MITgcm-checkpoint68i/pkg/thsice/thsice_extend.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_bulkf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_precip.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_velocity.F MITgcm-checkpoint68i/pkg/thsice/thsice_impl_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_ini_vars.F MITgcm-checkpoint68i/pkg/thsice/thsice_init_fixed.F MITgcm-checkpoint68i/pkg/thsice/thsice_main.F MITgcm-checkpoint68i/pkg/thsice/thsice_map_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_mnc_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_monitor.F MITgcm-checkpoint68i/pkg/thsice/thsice_output.F MITgcm-checkpoint68i/pkg/thsice/thsice_read_pickup.F MITgcm-checkpoint68i/pkg/thsice/thsice_readparms.F MITgcm-checkpoint68i/pkg/thsice/thsice_reshape_layers.F MITgcm-checkpoint68i/pkg/thsice/thsice_salt_plume.F MITgcm-checkpoint68i/pkg/thsice/thsice_slab_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_solve4temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_fwd.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_test_addfluid.h MITgcm-checkpoint68i/pkg/thsice/thsice_turnoff_io.F MITgcm-checkpoint68i/pkg/thsice/thsice_write_pickup.F MITgcm-checkpoint68i/pkg/timeave/ MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_OPTIONS.h MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_STATV.h MITgcm-checkpoint68i/pkg/timeave/timeave_ad_diff.list MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1k1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_dif_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumulate.F MITgcm-checkpoint68i/pkg/timeave/timeave_description.tex MITgcm-checkpoint68i/pkg/timeave/timeave_init_fixed.F MITgcm-checkpoint68i/pkg/timeave/timeave_norma_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_normalize.F MITgcm-checkpoint68i/pkg/timeave/timeave_reset.F MITgcm-checkpoint68i/pkg/timeave/timeave_statv_write.F MITgcm-checkpoint68i/pkg/timeave/timeave_statvars.F MITgcm-checkpoint68i/pkg/timeave/timeave_surf_flux.F MITgcm-checkpoint68i/pkg/zonal_filt/ MITgcm-checkpoint68i/pkg/zonal_filt/FFTPACK.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/zonal_filt/fftpack.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_ts.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_uv.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_init.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_nofill.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_postsmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_presmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_readparms.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filter.F MITgcm-checkpoint68i/tools/ MITgcm-checkpoint68i/tools/OAD_support/ MITgcm-checkpoint68i/tools/OAD_support/OAD_active.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_regular_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_rev.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_tape.F90 MITgcm-checkpoint68i/tools/OAD_support/ad_inline.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xyz.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_write_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.dummy_in_stepping.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rs.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_max_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_tile_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.regular.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.revolve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.sa_cg2d.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split_non_anonymous.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_cg_solve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_fp_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_invert_surf_forthick.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_smooth_adjoint_field.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_vel_phistage.F MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mUseModules.bash MITgcm-checkpoint68i/tools/OAD_support/dontCompile MITgcm-checkpoint68i/tools/OAD_support/dontTransform MITgcm-checkpoint68i/tools/OAD_support/fixData.sed MITgcm-checkpoint68i/tools/OAD_support/iaddr.c MITgcm-checkpoint68i/tools/OAD_support/insertTemplateDir.bash MITgcm-checkpoint68i/tools/OAD_support/keepOriginal MITgcm-checkpoint68i/tools/OAD_support/revolve.F90 MITgcm-checkpoint68i/tools/OAD_support/stop2print.sed MITgcm-checkpoint68i/tools/OAD_support/strip.sed MITgcm-checkpoint68i/tools/OAD_support/timeRatio.c MITgcm-checkpoint68i/tools/OAD_support/w2f__types.F90 MITgcm-checkpoint68i/tools/ad_taf_output.f.adtrick.diff MITgcm-checkpoint68i/tools/ad_taf_output.f.diva.diff_del1 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MITgcm-checkpoint68i/verification/vermix/results/output.ggl90.txt MITgcm-checkpoint68i/verification/vermix/results/output.my82.txt MITgcm-checkpoint68i/verification/vermix/results/output.opps.txt MITgcm-checkpoint68i/verification/vermix/results/output.pp81.txt MITgcm-checkpoint68i/verification/vermix/results/output.txt MITgcm-checkpoint68i/verification/vermix/run/ MITgcm-checkpoint68i/verification/vermix/run/.gitignore [41;37m step #5: BuildMITgcm [0m GENMAKE : A program for GENerating MAKEfiles for the MITgcm project. For a quick list of options, use "genmake2 -h" or for more detail see the documentation, section "Building the model" (under "Getting Started") at: https://mitgcm.readthedocs.io/ === Processing options files and arguments === getting local config information: none found getting OPTFILE information: Warning: no OPTFILE specified so we'll look for possible settings === Searching for possible settings for OPTFILE === The platform appears to be: linux_amd64 The possible FORTRAN compilers found in your path are: gfortran f77 f95 mpif77 Setting OPTFILE to: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran using OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran" get Compiler-version: '12' getting AD_OPTFILE information: using AD_OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/adjoint_options/adjoint_default" check Fortran Compiler... pass (set FC_CHECK=5/5) check makedepend (local: 0, system: 1, 1) Turning on MPI cpp macros === Checking system libraries === Do we have the system() command using mpif77... yes Do we have the fdate() command using mpif77... yes Do we have the etime() command using mpif77... c,r: yes (SbR) Can we call simple C routines (here, "cloc()") using mpif77... yes Can we unlimit the stack size using mpif77... yes Can we register a signal handler using mpif77... yes Can we use stat() through C calls... yes Can we create NetCDF-enabled binaries... no skip check for LAPACK Libs Can we call FLUSH intrinsic subroutine... yes === Setting defaults === Adding MODS directories: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code Making source files in eesupp from templates Making source files in pkg/exch2 from templates Making source files in pkg/regrid from templates === Determining package settings === getting package dependency info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_depend getting package groups info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_groups checking list of packages to compile: using PKG_LIST="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/packages.conf" before group expansion packages are: gfd obcs shelfice diagnostics timeave replacing "gfd" with: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor after group expansion packages are: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor obcs shelfice diagnostics timeave applying DISABLE settings applying ENABLE settings packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave applying package dependency rules packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave Adding STANDARDDIRS='eesupp model' Searching for *OPTIONS.h files in order to warn about the presence of "#define "-type statements that are no longer allowed: found CPP_EEOPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h" found CPP_OPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h" Creating the list of files for the adjoint compiler. === Creating the Makefile === setting INCLUDES Determining the list of source and include files Writing makefile: Makefile Add the source list for AD code generation Making list of "exceptions" that need ".p" files Making list of NOOPTFILES Add rules for links Adding makedepend marker === Done === original 'Makefile' generated successfully => next steps: > make depend > make (<-- to generate executable) make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' if [ ! -L cpl_issm.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/cpl_issm.F cpl_issm.F; fi if [ ! -L do_oceanic_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/do_oceanic_phys.F do_oceanic_phys.F; fi if [ ! -L eeboot_minimal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eeboot_minimal.F eeboot_minimal.F; fi if [ ! -L eedie.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eedie.F eedie.F; fi if [ ! -L chksum_tiled.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/chksum_tiled.F chksum_tiled.F; fi if [ ! -L debug_call.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_call.F debug_call.F; fi if [ ! -L debug_cs_corner_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_cs_corner_uv.F debug_cs_corner_uv.F; fi if [ ! -L debug_enter.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_enter.F debug_enter.F; fi if [ ! -L debug_fld_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rl.F debug_fld_stats_rl.F; fi if [ ! -L debug_fld_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rs.F debug_fld_stats_rs.F; fi if [ ! -L debug_leave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_leave.F debug_leave.F; fi if [ ! -L debug_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_msg.F debug_msg.F; fi if [ ! -L debug_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rl.F debug_stats_rl.F; fi if [ ! -L debug_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rs.F debug_stats_rs.F; fi if [ ! -L fill_in_corners_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/fill_in_corners_rl.F fill_in_corners_rl.F; fi if [ ! -L write_fullarray_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rl.F write_fullarray_rl.F; fi if [ ! -L write_fullarray_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rs.F write_fullarray_rs.F; fi if [ ! -L diag_calc_psivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_calc_psivel.F diag_calc_psivel.F; fi if [ ! -L diag_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_cg2d.F diag_cg2d.F; fi if [ ! -L diagnostics_addtolist.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_addtolist.F diagnostics_addtolist.F; fi if [ ! -L diagnostics_calc_phivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_calc_phivel.F diagnostics_calc_phivel.F; fi if [ ! -L diagnostics_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_check.F diagnostics_check.F; fi if [ ! -L diagnostics_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_clear.F diagnostics_clear.F; fi if [ ! -L diagnostics_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill.F diagnostics_fill.F; fi if [ ! -L diagnostics_fill_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_field.F diagnostics_fill_field.F; fi if [ ! -L diagnostics_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_rs.F diagnostics_fill_rs.F; fi if [ ! -L diagnostics_fill_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_state.F diagnostics_fill_state.F; fi if [ ! -L diagnostics_fract_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fract_fill.F diagnostics_fract_fill.F; fi if [ ! -L diagnostics_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_ini_io.F diagnostics_ini_io.F; fi if [ ! -L diagnostics_init_early.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_early.F diagnostics_init_early.F; fi if [ ! -L diagnostics_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_fixed.F diagnostics_init_fixed.F; fi if [ ! -L diagnostics_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_varia.F diagnostics_init_varia.F; fi if [ ! -L diagnostics_interp_p2p.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_p2p.F diagnostics_interp_p2p.F; fi if [ ! -L diagnostics_interp_vert.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_vert.F diagnostics_interp_vert.F; fi if [ ! -L diagnostics_is_on.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_is_on.F diagnostics_is_on.F; fi if [ ! -L diagnostics_list_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_list_check.F diagnostics_list_check.F; fi if [ ! -L diagnostics_main_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_main_init.F diagnostics_main_init.F; fi if [ ! -L diagnostics_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_mnc_out.F diagnostics_mnc_out.F; fi if [ ! -L diagnostics_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_out.F diagnostics_out.F; fi if [ ! -L diagnostics_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_readparms.F diagnostics_readparms.F; fi if [ ! -L diagnostics_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_read_pickup.F diagnostics_read_pickup.F; fi if [ ! -L diagnostics_scale_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill.F diagnostics_scale_fill.F; fi if [ ! -L diagnostics_scale_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill_rs.F diagnostics_scale_fill_rs.F; fi if [ ! -L diagnostics_set_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_calc.F diagnostics_set_calc.F; fi if [ ! -L diagnostics_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_setdiag.F diagnostics_setdiag.F; fi if [ ! -L diagnostics_set_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_levels.F diagnostics_set_levels.F; fi if [ ! -L diagnostics_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_pointers.F diagnostics_set_pointers.F; fi if [ ! -L diagnostics_status_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_status_error.F diagnostics_status_error.F; fi if [ ! -L diagnostics_sum_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_sum_levels.F diagnostics_sum_levels.F; fi if [ ! -L diagnostics_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_summary.F diagnostics_summary.F; fi if [ ! -L diagnostics_switch_onoff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_switch_onoff.F diagnostics_switch_onoff.F; fi if [ ! -L diagnostics_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_utils.F diagnostics_utils.F; fi if [ ! -L diagnostics_write_adj.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_adj.F diagnostics_write_adj.F; fi if [ ! -L diagnostics_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write.F diagnostics_write.F; fi if [ ! -L diagnostics_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_pickup.F diagnostics_write_pickup.F; fi if [ ! -L diagstats_ascii_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ascii_out.F diagstats_ascii_out.F; fi if [ ! -L diagstats_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_calc.F diagstats_calc.F; fi if [ ! -L diagstats_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_clear.F diagstats_clear.F; fi if [ ! -L diagstats_close_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_close_io.F diagstats_close_io.F; fi if [ ! -L diagstats_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_fill.F diagstats_fill.F; fi if [ ! -L diagstats_global.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_global.F diagstats_global.F; fi if [ ! -L diagstats_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ini_io.F diagstats_ini_io.F; fi if [ ! -L diagstats_local.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_local.F diagstats_local.F; fi if [ ! -L diagstats_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_mnc_out.F diagstats_mnc_out.F; fi if [ ! -L diagstats_others_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_others_calc.F diagstats_others_calc.F; fi if [ ! -L diagstats_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_output.F diagstats_output.F; fi if [ ! -L diagstats_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_setdiag.F diagstats_setdiag.F; fi if [ ! -L diagstats_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_pointers.F diagstats_set_pointers.F; fi if [ ! -L diagstats_set_regions.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_regions.F diagstats_set_regions.F; fi if [ ! -L diag_vegtile_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_vegtile_fill.F diag_vegtile_fill.F; fi if [ ! -L gad_advection.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advection.F gad_advection.F; fi if [ ! -L gad_advscheme.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advscheme.F gad_advscheme.F; fi if [ ! -L gad_biharm_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_r.F gad_biharm_r.F; fi if [ ! -L gad_biharm_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_x.F gad_biharm_x.F; fi if [ ! -L gad_biharm_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_y.F gad_biharm_y.F; fi if [ ! -L gad_c2_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_r.F gad_c2_adv_r.F; fi if [ ! -L gad_c2_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_x.F gad_c2_adv_x.F; fi if [ ! -L gad_c2_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_y.F gad_c2_adv_y.F; fi if [ ! -L gad_c2_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_impl_r.F gad_c2_impl_r.F; fi if [ ! -L gad_c4_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_r.F gad_c4_adv_r.F; fi if [ ! -L gad_c4_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_x.F gad_c4_adv_x.F; fi if [ ! -L gad_c4_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_y.F gad_c4_adv_y.F; fi if [ ! -L gad_calc_rhs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_calc_rhs.F gad_calc_rhs.F; fi if [ ! -L gad_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_check.F gad_check.F; fi if [ ! -L gad_del2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_del2.F gad_del2.F; fi if [ ! -L gad_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_init.F gad_diagnostics_init.F; fi if [ ! -L gad_diagnostics_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_state.F gad_diagnostics_state.F; fi if [ ! -L gad_diff_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_r.F gad_diff_r.F; fi if [ ! -L gad_diff_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_x.F gad_diff_x.F; fi if [ ! -L gad_diff_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_y.F gad_diff_y.F; fi if [ ! -L gad_dst2u1_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_r.F gad_dst2u1_adv_r.F; fi if [ ! -L gad_dst2u1_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_x.F gad_dst2u1_adv_x.F; fi if [ ! -L gad_dst2u1_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_y.F gad_dst2u1_adv_y.F; fi if [ ! -L gad_dst2u1_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_impl_r.F gad_dst2u1_impl_r.F; fi if [ ! -L gad_dst3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_r.F gad_dst3_adv_r.F; fi if [ ! -L gad_dst3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_x.F gad_dst3_adv_x.F; fi if [ ! -L gad_dst3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_y.F gad_dst3_adv_y.F; fi if [ ! -L gad_dst3fl_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_r.F gad_dst3fl_adv_r.F; fi if [ ! -L gad_dst3fl_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_x.F gad_dst3fl_adv_x.F; fi if [ ! -L gad_dst3fl_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_y.F gad_dst3fl_adv_y.F; fi if [ ! -L gad_dst3fl_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_impl_r.F gad_dst3fl_impl_r.F; fi if [ ! -L gad_exch_som.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_exch_som.F gad_exch_som.F; fi if [ ! -L gad_fluxlimit_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_r.F gad_fluxlimit_adv_r.F; fi if [ ! -L gad_fluxlimit_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_x.F gad_fluxlimit_adv_x.F; fi if [ ! -L gad_fluxlimit_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_y.F gad_fluxlimit_adv_y.F; fi if [ ! -L gad_fluxlimit_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_impl_r.F gad_fluxlimit_impl_r.F; fi if [ ! -L gad_grad_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_x.F gad_grad_x.F; fi if [ ! -L gad_grad_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_y.F gad_grad_y.F; fi if [ ! -L gad_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_implicit_r.F gad_implicit_r.F; fi if [ ! -L gad_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_fixed.F gad_init_fixed.F; fi if [ ! -L gad_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_varia.F gad_init_varia.F; fi if [ ! -L gad_os7mp_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_r.F gad_os7mp_adv_r.F; fi if [ ! -L gad_os7mp_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_x.F gad_os7mp_adv_x.F; fi if [ ! -L gad_os7mp_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_y.F gad_os7mp_adv_y.F; fi if [ ! -L gad_osc_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_r.F gad_osc_hat_r.F; fi if [ ! -L gad_osc_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_x.F gad_osc_hat_x.F; fi if [ ! -L gad_osc_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_y.F gad_osc_hat_y.F; fi if [ ! -L gad_osc_mul_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_r.F gad_osc_mul_r.F; fi if [ ! -L gad_osc_mul_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_x.F gad_osc_mul_x.F; fi if [ ! -L gad_osc_mul_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_y.F gad_osc_mul_y.F; fi if [ ! -L gad_plm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_plm_fun.F gad_plm_fun.F; fi if [ ! -L gad_ppm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_r.F gad_ppm_adv_r.F; fi if [ ! -L gad_ppm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_x.F gad_ppm_adv_x.F; fi if [ ! -L gad_ppm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_y.F gad_ppm_adv_y.F; fi if [ ! -L gad_ppm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_r.F gad_ppm_flx_r.F; fi if [ ! -L gad_ppm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_x.F gad_ppm_flx_x.F; fi if [ ! -L gad_ppm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_y.F gad_ppm_flx_y.F; fi if [ ! -L gad_ppm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_fun.F gad_ppm_fun.F; fi if [ ! -L gad_ppm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_r.F gad_ppm_hat_r.F; fi if [ ! -L gad_ppm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_x.F gad_ppm_hat_x.F; fi if [ ! -L gad_ppm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_y.F gad_ppm_hat_y.F; fi if [ ! -L gad_ppm_p3e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_r.F gad_ppm_p3e_r.F; fi if [ ! -L gad_ppm_p3e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_x.F gad_ppm_p3e_x.F; fi if [ ! -L gad_ppm_p3e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_y.F gad_ppm_p3e_y.F; fi if [ ! -L gad_pqm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_r.F gad_pqm_adv_r.F; fi if [ ! -L gad_pqm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_x.F gad_pqm_adv_x.F; fi if [ ! -L gad_pqm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_y.F gad_pqm_adv_y.F; fi if [ ! -L gad_pqm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_r.F gad_pqm_flx_r.F; fi if [ ! -L gad_pqm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_x.F gad_pqm_flx_x.F; fi if [ ! -L gad_pqm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_y.F gad_pqm_flx_y.F; fi if [ ! -L gad_pqm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_fun.F gad_pqm_fun.F; fi if [ ! -L gad_pqm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_r.F gad_pqm_hat_r.F; fi if [ ! -L gad_pqm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_x.F gad_pqm_hat_x.F; fi if [ ! -L gad_pqm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_y.F gad_pqm_hat_y.F; fi if [ ! -L gad_pqm_p5e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_r.F gad_pqm_p5e_r.F; fi if [ ! -L gad_pqm_p5e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_x.F gad_pqm_p5e_x.F; fi if [ ! -L gad_pqm_p5e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_y.F gad_pqm_p5e_y.F; fi if [ ! -L gad_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_read_pickup.F gad_read_pickup.F; fi if [ ! -L gad_som_advect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_advect.F gad_som_advect.F; fi if [ ! -L gad_som_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_r.F gad_som_adv_r.F; fi if [ ! -L gad_som_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_x.F gad_som_adv_x.F; fi if [ ! -L gad_som_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_y.F gad_som_adv_y.F; fi if [ ! -L gad_som_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_exchanges.F gad_som_exchanges.F; fi if [ ! -L gad_som_fill_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_fill_cs_corner.F gad_som_fill_cs_corner.F; fi if [ ! -L gad_som_lim_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_lim_r.F gad_som_lim_r.F; fi if [ ! -L gad_som_prep_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_prep_cs_corner.F gad_som_prep_cs_corner.F; fi if [ ! -L gad_u3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_r.F gad_u3_adv_r.F; fi if [ ! -L gad_u3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_x.F gad_u3_adv_x.F; fi if [ ! -L gad_u3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_y.F gad_u3_adv_y.F; fi if [ ! -L gad_u3c4_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3c4_impl_r.F gad_u3c4_impl_r.F; fi if [ ! -L gad_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_write_pickup.F gad_write_pickup.F; fi if [ ! -L salt_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/salt_fill.F salt_fill.F; fi if [ ! -L mdsio_buffertorl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertorl.F mdsio_buffertorl.F; fi if [ ! -L mdsio_buffertors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertors.F mdsio_buffertors.F; fi if [ ! -L mdsio_check4file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_check4file.F mdsio_check4file.F; fi if [ ! -L mdsio_facef_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_facef_read.F mdsio_facef_read.F; fi if [ ! -L mdsio_gl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl.F mdsio_gl.F; fi if [ ! -L mdsio_gl_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl_slice.F mdsio_gl_slice.F; fi if [ ! -L mdsio_pass_r4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4torl.F mdsio_pass_r4torl.F; fi if [ ! -L mdsio_pass_r4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4tors.F mdsio_pass_r4tors.F; fi if [ ! -L mdsio_pass_r8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8torl.F mdsio_pass_r8torl.F; fi if [ ! -L mdsio_pass_r8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8tors.F mdsio_pass_r8tors.F; fi if [ ! -L mdsio_rd_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rl.F mdsio_rd_rec_rl.F; fi if [ ! -L mdsio_rd_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rs.F mdsio_rd_rec_rs.F; fi if [ ! -L mdsio_read_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_field.F mdsio_read_field.F; fi if [ ! -L mdsio_read_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_meta.F mdsio_read_meta.F; fi if [ ! -L mdsio_read_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_section.F mdsio_read_section.F; fi if [ ! -L mdsio_read_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_tape.F mdsio_read_tape.F; fi if [ ! -L mdsio_readvec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_readvec_loc.F mdsio_readvec_loc.F; fi if [ ! -L mdsio_read_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_whalos.F mdsio_read_whalos.F; fi if [ ! -L mdsio_rw_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_field.F mdsio_rw_field.F; fi if [ ! -L mdsio_rw_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_slice.F mdsio_rw_slice.F; fi if [ ! -L mdsio_seg4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4torl.F mdsio_seg4torl.F; fi if [ ! -L mdsio_seg4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4tors.F mdsio_seg4tors.F; fi if [ ! -L mdsio_seg8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8torl.F mdsio_seg8torl.F; fi if [ ! -L mdsio_seg8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8tors.F mdsio_seg8tors.F; fi if [ ! -L mdsio_segxtorx_2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_segxtorx_2d.F mdsio_segxtorx_2d.F; fi if [ ! -L mdsio_write_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_field.F mdsio_write_field.F; fi if [ ! -L mdsio_writelocal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writelocal.F mdsio_writelocal.F; fi if [ ! -L mdsio_write_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_meta.F mdsio_write_meta.F; fi if [ ! -L mdsio_write_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_section.F mdsio_write_section.F; fi if [ ! -L mdsio_write_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_tape.F mdsio_write_tape.F; fi if [ ! -L mdsio_writevec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writevec_loc.F mdsio_writevec_loc.F; fi if [ ! -L mdsio_write_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_whalos.F mdsio_write_whalos.F; fi if [ ! -L mdsio_wr_metafiles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_metafiles.F mdsio_wr_metafiles.F; fi if [ ! -L mdsio_wr_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rl.F mdsio_wr_rec_rl.F; fi if [ ! -L mdsio_wr_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rs.F mdsio_wr_rec_rs.F; fi if [ ! -L mom_calc_3d_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_3d_strain.F mom_calc_3d_strain.F; fi if [ ! -L mom_calc_absvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_absvort3.F mom_calc_absvort3.F; fi if [ ! -L mom_calc_hdiv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hdiv.F mom_calc_hdiv.F; fi if [ ! -L mom_calc_hfacz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hfacz.F mom_calc_hfacz.F; fi if [ ! -L mom_calc_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_ke.F mom_calc_ke.F; fi if [ ! -L mom_calc_relvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_relvort3.F mom_calc_relvort3.F; fi if [ ! -L mom_calc_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_smag_3d.F mom_calc_smag_3d.F; fi if [ ! -L mom_calc_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_strain.F mom_calc_strain.F; fi if [ ! -L mom_calc_tension.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_tension.F mom_calc_tension.F; fi if [ ! -L mom_calc_visc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_visc.F mom_calc_visc.F; fi if [ ! -L mom_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_diagnostics_init.F mom_diagnostics_init.F; fi if [ ! -L mom_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_hdissip.F mom_hdissip.F; fi if [ ! -L mom_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_init_fixed.F mom_init_fixed.F; fi if [ ! -L mom_quasihydrostatic.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_quasihydrostatic.F mom_quasihydrostatic.F; fi if [ ! -L mom_u_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_botdrag_coeff.F mom_u_botdrag_coeff.F; fi if [ ! -L mom_u_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_coriolis_nh.F mom_u_coriolis_nh.F; fi if [ ! -L mom_u_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_implicit_r.F mom_u_implicit_r.F; fi if [ ! -L mom_u_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_metric_nh.F mom_u_metric_nh.F; fi if [ ! -L mom_u_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_rviscflux.F mom_u_rviscflux.F; fi if [ ! -L mom_u_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_sidedrag.F mom_u_sidedrag.F; fi if [ ! -L mom_uv_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_uv_smag_3d.F mom_uv_smag_3d.F; fi if [ ! -L mom_v_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_botdrag_coeff.F mom_v_botdrag_coeff.F; fi if [ ! -L mom_v_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_coriolis_nh.F mom_v_coriolis_nh.F; fi if [ ! -L mom_v_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_implicit_r.F mom_v_implicit_r.F; fi if [ ! -L mom_visc_qgl_limit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_limit.F mom_visc_qgl_limit.F; fi if [ ! -L mom_visc_qgl_stretch.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_stretch.F mom_visc_qgl_stretch.F; fi if [ ! -L mom_v_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_metric_nh.F mom_v_metric_nh.F; fi if [ ! -L mom_v_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_rviscflux.F mom_v_rviscflux.F; fi if [ ! -L mom_v_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_sidedrag.F mom_v_sidedrag.F; fi if [ ! -L mom_w_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_coriolis_nh.F mom_w_coriolis_nh.F; fi if [ ! -L mom_w_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_metric_nh.F mom_w_metric_nh.F; fi if [ ! -L mom_w_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_sidedrag.F mom_w_sidedrag.F; fi if [ ! -L mom_w_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_smag_3d.F mom_w_smag_3d.F; fi if [ ! -L mom_calc_rtrans.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_calc_rtrans.F mom_calc_rtrans.F; fi if [ ! -L mom_fluxform.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_fluxform.F mom_fluxform.F; fi if [ ! -L mom_u_adv_uu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_uu.F mom_u_adv_uu.F; fi if [ ! -L mom_u_adv_vu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_vu.F mom_u_adv_vu.F; fi if [ ! -L mom_u_adv_wu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_wu.F mom_u_adv_wu.F; fi if [ ! -L mom_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_coriolis.F mom_u_coriolis.F; fi if [ ! -L mom_u_del2u.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_del2u.F mom_u_del2u.F; fi if [ ! -L mom_u_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_cylinder.F mom_u_metric_cylinder.F; fi if [ ! -L mom_u_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_sphere.F mom_u_metric_sphere.F; fi if [ ! -L mom_uv_boundary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_uv_boundary.F mom_uv_boundary.F; fi if [ ! -L mom_u_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_xviscflux.F mom_u_xviscflux.F; fi if [ ! -L mom_u_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_yviscflux.F mom_u_yviscflux.F; fi if [ ! -L mom_v_adv_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_uv.F mom_v_adv_uv.F; fi if [ ! -L mom_v_adv_vv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_vv.F mom_v_adv_vv.F; fi if [ ! -L mom_v_adv_wv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_wv.F mom_v_adv_wv.F; fi if [ ! -L mom_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_coriolis.F mom_v_coriolis.F; fi if [ ! -L mom_v_del2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_del2v.F mom_v_del2v.F; fi if [ ! -L mom_v_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_cylinder.F mom_v_metric_cylinder.F; fi if [ ! -L mom_v_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_sphere.F mom_v_metric_sphere.F; fi if [ ! -L mom_v_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_xviscflux.F mom_v_xviscflux.F; fi if [ ! -L mom_v_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_yviscflux.F mom_v_yviscflux.F; fi if [ ! -L mom_vecinv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vecinv.F mom_vecinv.F; fi if [ ! -L mom_vi_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_coriolis.F mom_vi_coriolis.F; fi if [ ! -L mom_vi_del2uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_del2uv.F mom_vi_del2uv.F; fi if [ ! -L mom_vi_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_hdissip.F mom_vi_hdissip.F; fi if [ ! -L mom_vi_u_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F mom_vi_u_coriolis_c4.F; fi if [ ! -L mom_vi_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis.F mom_vi_u_coriolis.F; fi if [ ! -L mom_vi_u_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_grad_ke.F mom_vi_u_grad_ke.F; fi if [ ! -L mom_vi_u_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_vertshear.F mom_vi_u_vertshear.F; fi if [ ! -L mom_vi_v_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F mom_vi_v_coriolis_c4.F; fi if [ ! -L mom_vi_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis.F mom_vi_v_coriolis.F; fi if [ ! -L mom_vi_v_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_grad_ke.F mom_vi_v_grad_ke.F; fi if [ ! -L mom_vi_v_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_vertshear.F mom_vi_v_vertshear.F; fi if [ ! -L mon_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcfl.F mon_advcfl.F; fi if [ ! -L mon_advcflw2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw2.F mon_advcflw2.F; fi if [ ! -L mon_advcflw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw.F mon_advcflw.F; fi if [ ! -L mon_calc_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_advcfl.F mon_calc_advcfl.F; fi if [ ! -L mon_calc_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rl.F mon_calc_stats_rl.F; fi if [ ! -L mon_calc_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rs.F mon_calc_stats_rs.F; fi if [ ! -L mon_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_init.F mon_init.F; fi if [ ! -L monitor_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_ad.F monitor_ad.F; fi if [ ! -L monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor.F monitor.F; fi if [ ! -L monitor_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_g.F monitor_g.F; fi if [ ! -L mon_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_ke.F mon_ke.F; fi if [ ! -L mon_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_out.F mon_out.F; fi if [ ! -L mon_printstats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rl.F mon_printstats_rl.F; fi if [ ! -L mon_printstats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rs.F mon_printstats_rs.F; fi if [ ! -L mon_set_iounit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_iounit.F mon_set_iounit.F; fi if [ ! -L mon_set_pref.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_pref.F mon_set_pref.F; fi if [ ! -L mon_solution.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_solution.F mon_solution.F; fi if [ ! -L mon_stats_latbnd_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_latbnd_rl.F mon_stats_latbnd_rl.F; fi if [ ! -L mon_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rl.F mon_stats_rl.F; fi if [ ! -L mon_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rs.F mon_stats_rs.F; fi if [ ! -L mon_surfcor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_surfcor.F mon_surfcor.F; fi if [ ! -L mon_vort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_vort3.F mon_vort3.F; fi if [ ! -L mon_writestats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rl.F mon_writestats_rl.F; fi if [ ! -L mon_writestats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rs.F mon_writestats_rs.F; fi if [ ! -L obcs_add_tides.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_add_tides.F obcs_add_tides.F; fi if [ ! -L obcs_adjust.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust.F obcs_adjust.F; fi if [ ! -L obcs_adjust_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust_uvice.F obcs_adjust_uvice.F; fi if [ ! -L obcs_apply_eta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_eta.F obcs_apply_eta.F; fi if [ ! -L obcs_apply_ptracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ptracer.F obcs_apply_ptracer.F; fi if [ ! -L obcs_apply_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_r_star.F obcs_apply_r_star.F; fi if [ ! -L obcs_apply_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_seaice.F obcs_apply_seaice.F; fi if [ ! -L obcs_apply_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_surf_dr.F obcs_apply_surf_dr.F; fi if [ ! -L obcs_apply_ts.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ts.F obcs_apply_ts.F; fi if [ ! -L obcs_apply_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uv.F obcs_apply_uv.F; fi if [ ! -L obcs_apply_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uvice.F obcs_apply_uvice.F; fi if [ ! -L obcs_apply_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_w.F obcs_apply_w.F; fi if [ ! -L obcs_balance_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_balance_flow.F obcs_balance_flow.F; fi if [ ! -L obcs_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc.F obcs_calc.F; fi if [ ! -L obcs_calc_stevens.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc_stevens.F obcs_calc_stevens.F; fi if [ ! -L obcs_check_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check_depths.F obcs_check_depths.F; fi if [ ! -L obcs_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check.F obcs_check.F; fi if [ ! -L obcs_copy_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_tracer.F obcs_copy_tracer.F; fi if [ ! -L obcs_copy_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_uv_n.F obcs_copy_uv_n.F; fi if [ ! -L obcs_diag_balance.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_diag_balance.F obcs_diag_balance.F; fi if [ ! -L obcs_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exchanges.F obcs_exchanges.F; fi if [ ! -L obcs_exf_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exf_load.F obcs_exf_load.F; fi if [ ! -L obcs_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_fields_load.F obcs_fields_load.F; fi if [ ! -L obcs_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_fixed.F obcs_init_fixed.F; fi if [ ! -L obcs_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_variables.F obcs_init_variables.F; fi if [ ! -L obcs_monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_monitor.F obcs_monitor.F; fi if [ ! -L obcs_mon_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_mon_stats.F obcs_mon_stats.F; fi if [ ! -L obcs_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_output.F obcs_output.F; fi if [ ! -L obcs_prescribe_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_prescribe_read.F obcs_prescribe_read.F; fi if [ ! -L obcs_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_readparms.F obcs_readparms.F; fi if [ ! -L obcs_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_read_pickup.F obcs_read_pickup.F; fi if [ ! -L obcs_save_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_save_uv_n.F obcs_save_uv_n.F; fi if [ ! -L obcs_seaice_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_seaice_sponge.F obcs_seaice_sponge.F; fi if [ ! -L obcs_set_connect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_set_connect.F obcs_set_connect.F; fi if [ ! -L obcs_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_sponge.F obcs_sponge.F; fi if [ ! -L obcs_u1_adv_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_u1_adv_tracer.F obcs_u1_adv_tracer.F; fi if [ ! -L obcs_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_write_pickup.F obcs_write_pickup.F; fi if [ ! -L orlanski_east.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_east.F orlanski_east.F; fi if [ ! -L orlanski_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_init.F orlanski_init.F; fi if [ ! -L orlanski_north.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_north.F orlanski_north.F; fi if [ ! -L orlanski_south.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_south.F orlanski_south.F; fi if [ ! -L orlanski_west.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_west.F orlanski_west.F; fi if [ ! -L get_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/get_write_global_fld.F get_write_global_fld.F; fi if [ ! -L read_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rl.F read_fld_xy_rl.F; fi if [ ! -L read_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rs.F read_fld_xy_rs.F; fi if [ ! -L read_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rl.F read_fld_xyz_rl.F; fi if [ ! -L read_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rs.F read_fld_xyz_rs.F; fi if [ ! -L read_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rl.F read_glvec_rl.F; fi if [ ! -L read_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rs.F read_glvec_rs.F; fi if [ ! -L read_mflds.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_mflds.F read_mflds.F; fi if [ ! -L read_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_rec.F read_rec.F; fi if [ ! -L rw_get_suffix.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/rw_get_suffix.F rw_get_suffix.F; fi if [ ! -L set_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/set_write_global_fld.F set_write_global_fld.F; fi if [ ! -L write_fld_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rl.F write_fld_3d_rl.F; fi if [ ! -L write_fld_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rs.F write_fld_3d_rs.F; fi if [ ! -L write_fld_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rl.F write_fld_s3d_rl.F; fi if [ ! -L write_fld_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rs.F write_fld_s3d_rs.F; fi if [ ! -L write_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rl.F write_fld_xy_rl.F; fi if [ ! -L write_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rs.F write_fld_xy_rs.F; fi if [ ! -L write_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rl.F write_fld_xyz_rl.F; fi if [ ! -L write_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rs.F write_fld_xyz_rs.F; fi if [ ! -L write_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rl.F write_glvec_rl.F; fi if [ ! -L write_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rs.F write_glvec_rs.F; fi if [ ! -L write_local_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rl.F write_local_rl.F; fi if [ ! -L write_local_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rs.F write_local_rs.F; fi if [ ! -L write_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_rec.F write_rec.F; fi if [ ! -L shelfice_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_check.F shelfice_check.F; fi if [ ! -L shelfice_cost_accumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_accumulate.F shelfice_cost_accumulate.F; fi if [ ! -L shelfice_cost_final.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_final.F shelfice_cost_final.F; fi if [ ! -L shelfice_cost_shifwflx.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_shifwflx.F shelfice_cost_shifwflx.F; fi if [ ! -L shelfice_diagnostics_drag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_diagnostics_drag.F shelfice_diagnostics_drag.F; fi if [ ! -L shelfice_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing.F shelfice_forcing.F; fi if [ ! -L shelfice_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing_surf.F shelfice_forcing_surf.F; fi if [ ! -L shelfice_init_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_depths.F shelfice_init_depths.F; fi if [ ! -L shelfice_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_fixed.F shelfice_init_fixed.F; fi if [ ! -L shelfice_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_varia.F shelfice_init_varia.F; fi if [ ! -L shelfice_mask_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mask_seaice.F shelfice_mask_seaice.F; fi if [ ! -L shelfice_mnc_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mnc_init.F shelfice_mnc_init.F; fi if [ ! -L shelfice_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_output.F shelfice_output.F; fi if [ ! -L shelfice_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_readparms.F shelfice_readparms.F; fi if [ ! -L shelfice_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_read_pickup.F shelfice_read_pickup.F; fi if [ ! -L shelfice_remesh_calc_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_calc_w.F shelfice_remesh_calc_w.F; fi if [ ! -L shelfice_remesh_c_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_c_mask.F shelfice_remesh_c_mask.F; fi if [ ! -L shelfice_remeshing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remeshing.F shelfice_remeshing.F; fi if [ ! -L shelfice_remesh_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_state.F shelfice_remesh_state.F; fi if [ ! -L shelfice_remesh_uv_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_uv_mask.F shelfice_remesh_uv_mask.F; fi if [ ! -L shelfice_step_icemass.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_step_icemass.F shelfice_step_icemass.F; fi if [ ! -L shelfice_thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_thermodynamics.F shelfice_thermodynamics.F; fi if [ ! -L shelfice_u_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_u_drag_coeff.F shelfice_u_drag_coeff.F; fi if [ ! -L shelfice_v_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_v_drag_coeff.F shelfice_v_drag_coeff.F; fi if [ ! -L shelfice_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_write_pickup.F shelfice_write_pickup.F; fi if [ ! -L timeave_cumul_1k1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1k1t.F timeave_cumul_1k1t.F; fi if [ ! -L timeave_cumul_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1t.F timeave_cumul_1t.F; fi if [ ! -L timeave_cumul_1vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1vfc.F timeave_cumul_1vfc.F; fi if [ ! -L timeave_cumul_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2v.F timeave_cumul_2v.F; fi if [ ! -L timeave_cumul_2vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2vfc.F timeave_cumul_2vfc.F; fi if [ ! -L timeave_cumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumulate.F timeave_cumulate.F; fi if [ ! -L timeave_cumul_dif_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_dif_1t.F timeave_cumul_dif_1t.F; fi if [ ! -L timeave_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_init_fixed.F timeave_init_fixed.F; fi if [ ! -L timeave_norma_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_norma_2v.F timeave_norma_2v.F; fi if [ ! -L timeave_normalize.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_normalize.F timeave_normalize.F; fi if [ ! -L timeave_reset.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_reset.F timeave_reset.F; fi if [ ! -L timeave_statvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statvars.F timeave_statvars.F; fi if [ ! -L timeave_statv_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statv_write.F timeave_statv_write.F; fi if [ ! -L timeave_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_surf_flux.F timeave_surf_flux.F; fi if [ ! -L all_proc_die.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/all_proc_die.F all_proc_die.F; fi if [ ! -L bar2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar2.F bar2.F; fi if [ ! -L bar_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar_check.F bar_check.F; fi if [ ! -L barrier.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/barrier.F barrier.F; fi if [ ! -L check_threads.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/check_threads.F check_threads.F; fi if [ ! -L comm_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/comm_stats.F comm_stats.F; fi if [ ! -L cumulsum_z_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/cumulsum_z_tile.F cumulsum_z_tile.F; fi if [ ! -L different_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/different_multiple.F different_multiple.F; fi if [ ! -L diff_phase_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/diff_phase_multiple.F diff_phase_multiple.F; fi if [ ! -L eeboot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeboot.F eeboot.F; fi if [ ! -L eedata_example.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eedata_example.F eedata_example.F; fi if [ ! -L eeintro_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeintro_msg.F eeintro_msg.F; fi if [ ! -L eeset_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeset_parms.F eeset_parms.F; fi if [ ! -L eewrite_eeenv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eewrite_eeenv.F eewrite_eeenv.F; fi if [ ! -L exch0_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r4.F exch0_r4.F; fi if [ ! -L exch0_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r8.F exch0_r8.F; fi if [ ! -L exch0_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rl.F exch0_rl.F; fi if [ ! -L exch0_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rs.F exch0_rs.F; fi if [ ! -L exch1_bg_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r4_cube.F exch1_bg_r4_cube.F; fi if [ ! -L exch1_bg_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r8_cube.F exch1_bg_r8_cube.F; fi if [ ! -L exch1_bg_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rl_cube.F exch1_bg_rl_cube.F; fi if [ ! -L exch1_bg_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rs_cube.F exch1_bg_rs_cube.F; fi if [ ! -L exch1_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4_cube.F exch1_r4_cube.F; fi if [ ! -L exch1_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4.F exch1_r4.F; fi if [ ! -L exch1_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8_cube.F exch1_r8_cube.F; fi if [ ! -L exch1_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8.F exch1_r8.F; fi if [ ! -L exch1_rl_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_ad.F exch1_rl_ad.F; fi if [ ! -L exch1_rl_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube_ad.F exch1_rl_cube_ad.F; fi if [ ! -L exch1_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube.F exch1_rl_cube.F; fi if [ ! -L exch1_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl.F exch1_rl.F; fi if [ ! -L exch1_rs_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_ad.F exch1_rs_ad.F; fi if [ ! -L exch1_rs_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube_ad.F exch1_rs_cube_ad.F; fi if [ ! -L exch1_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube.F exch1_rs_cube.F; fi if [ ! -L exch1_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs.F exch1_rs.F; fi if [ ! -L exch1_uv_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r4_cube.F exch1_uv_r4_cube.F; fi if [ ! -L exch1_uv_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r8_cube.F exch1_uv_r8_cube.F; fi if [ ! -L exch1_uv_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rl_cube.F exch1_uv_rl_cube.F; fi if [ ! -L exch1_uv_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rs_cube.F exch1_uv_rs_cube.F; fi if [ ! -L exch1_z_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r4_cube.F exch1_z_r4_cube.F; fi if [ ! -L exch1_z_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r8_cube.F exch1_z_r8_cube.F; fi if [ ! -L exch1_z_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rl_cube.F exch1_z_rl_cube.F; fi if [ ! -L exch1_z_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rs_cube.F exch1_z_rs_cube.F; fi if [ ! -L exch_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r4.F exch_3d_r4.F; fi if [ ! -L exch_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r8.F exch_3d_r8.F; fi if [ ! -L exch_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rl.F exch_3d_rl.F; fi if [ ! -L exch_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rs.F exch_3d_rs.F; fi if [ ! -L exch_cycle_ebl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_cycle_ebl.F exch_cycle_ebl.F; fi if [ ! -L exch_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_init.F exch_init.F; fi if [ ! -L exch_r4_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_x.F exch_r4_recv_get_x.F; fi if [ ! -L exch_r4_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_y.F exch_r4_recv_get_y.F; fi if [ ! -L exch_r4_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_x.F exch_r4_send_put_x.F; fi if [ ! -L exch_r4_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_y.F exch_r4_send_put_y.F; fi if [ ! -L exch_r8_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_x.F exch_r8_recv_get_x.F; fi if [ ! -L exch_r8_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_y.F exch_r8_recv_get_y.F; fi if [ ! -L exch_r8_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_x.F exch_r8_send_put_x.F; fi if [ ! -L exch_r8_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_y.F exch_r8_send_put_y.F; fi if [ ! -L exch_rl_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_x.F exch_rl_recv_get_x.F; fi if [ ! -L exch_rl_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_y.F exch_rl_recv_get_y.F; fi if [ ! -L exch_rl_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_x.F exch_rl_send_put_x.F; fi if [ ! -L exch_rl_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_y.F exch_rl_send_put_y.F; fi if [ ! -L exch_rs_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_x.F exch_rs_recv_get_x.F; fi if [ ! -L exch_rs_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_y.F exch_rs_recv_get_y.F; fi if [ ! -L exch_rs_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_x.F exch_rs_send_put_x.F; fi if [ ! -L exch_rs_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_y.F exch_rs_send_put_y.F; fi if [ ! -L exch_s3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r4.F exch_s3d_r4.F; fi if [ ! -L exch_s3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r8.F exch_s3d_r8.F; fi if [ ! -L exch_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rl.F exch_s3d_rl.F; fi if [ ! -L exch_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rs.F exch_s3d_rs.F; fi if [ ! -L exch_sm_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r4.F exch_sm_3d_r4.F; fi if [ ! -L exch_sm_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r8.F exch_sm_3d_r8.F; fi if [ ! -L exch_sm_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rl.F exch_sm_3d_rl.F; fi if [ ! -L exch_sm_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rs.F exch_sm_3d_rs.F; fi if [ ! -L exch_uv_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r4.F exch_uv_3d_r4.F; fi if [ ! -L exch_uv_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r8.F exch_uv_3d_r8.F; fi if [ ! -L exch_uv_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rl.F exch_uv_3d_rl.F; fi if [ ! -L exch_uv_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rs.F exch_uv_3d_rs.F; fi if [ ! -L exch_uv_agrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r4.F; fi if [ ! -L exch_uv_agrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_r8.F; fi if [ ! -L exch_uv_agrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rl.F; fi if [ ! -L exch_uv_agrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rs.F exch_uv_agrid_3d_rs.F; fi if [ ! -L exch_uv_bgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r4.F; fi if [ ! -L exch_uv_bgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_r8.F; fi if [ ! -L exch_uv_bgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rl.F; fi if [ ! -L exch_uv_bgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rs.F exch_uv_bgrid_3d_rs.F; fi if [ ! -L exch_uv_dgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r4.F; fi if [ ! -L exch_uv_dgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_r8.F; fi if [ ! -L exch_uv_dgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rl.F; fi if [ ! -L exch_uv_dgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rs.F exch_uv_dgrid_3d_rs.F; fi if [ ! -L exch_uv_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r4.F exch_uv_xy_r4.F; fi if [ ! -L exch_uv_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r8.F exch_uv_xy_r8.F; fi if [ ! -L exch_uv_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rl.F exch_uv_xy_rl.F; fi if [ ! -L exch_uv_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rs.F exch_uv_xy_rs.F; fi if [ ! -L exch_uv_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r4.F exch_uv_xyz_r4.F; fi if [ ! -L exch_uv_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r8.F exch_uv_xyz_r8.F; fi if [ ! -L exch_uv_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rl.F exch_uv_xyz_rl.F; fi if [ ! -L exch_uv_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rs.F exch_uv_xyz_rs.F; fi if [ ! -L exch_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r4.F exch_xy_r4.F; fi if [ ! -L exch_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r8.F exch_xy_r8.F; fi if [ ! -L exch_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rl.F exch_xy_rl.F; fi if [ ! -L exch_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rs.F exch_xy_rs.F; fi if [ ! -L exch_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r4.F exch_xyz_r4.F; fi if [ ! -L exch_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r8.F exch_xyz_r8.F; fi if [ ! -L exch_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rl.F exch_xyz_rl.F; fi if [ ! -L exch_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rs.F exch_xyz_rs.F; fi if [ ! -L exch_z_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r4.F exch_z_3d_r4.F; fi if [ ! -L exch_z_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r8.F exch_z_3d_r8.F; fi if [ ! -L exch_z_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rl.F exch_z_3d_rl.F; fi if [ ! -L exch_z_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rs.F exch_z_3d_rs.F; fi if [ ! -L fill_cs_corner_ag_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_ag_rl.F fill_cs_corner_ag_rl.F; fi if [ ! -L fill_cs_corner_tr_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_tr_rl.F fill_cs_corner_tr_rl.F; fi if [ ! -L fill_cs_corner_uv_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rl.F fill_cs_corner_uv_rl.F; fi if [ ! -L fill_cs_corner_uv_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rs.F fill_cs_corner_uv_rs.F; fi if [ ! -L fool_the_compiler.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fool_the_compiler.F fool_the_compiler.F; fi if [ ! -L gather_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r4.F gather_2d_r4.F; fi if [ ! -L gather_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r8.F gather_2d_r8.F; fi if [ ! -L gather_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r4.F gather_2d_wh_r4.F; fi if [ ! -L gather_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r8.F gather_2d_wh_r8.F; fi if [ ! -L gather_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r4.F gather_vec_r4.F; fi if [ ! -L gather_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r8.F gather_vec_r8.F; fi if [ ! -L gather_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_xz.F gather_xz.F; fi if [ ! -L gather_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_yz.F gather_yz.F; fi if [ ! -L get_periodic_interval.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/get_periodic_interval.F get_periodic_interval.F; fi if [ ! -L global_max.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_max.F global_max.F; fi if [ ! -L global_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum.F global_sum.F; fi if [ ! -L global_sum_singlecpu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_singlecpu.F global_sum_singlecpu.F; fi if [ ! -L global_sum_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_tile.F global_sum_tile.F; fi if [ ! -L global_vec_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_vec_sum.F global_vec_sum.F; fi if [ ! -L gsum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsum.F gsum.F; fi if [ ! -L ini_communication_patterns.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_communication_patterns.F ini_communication_patterns.F; fi if [ ! -L ini_procs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_procs.F ini_procs.F; fi if [ ! -L ini_threading_environment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_threading_environment.F ini_threading_environment.F; fi if [ ! -L lef_zero.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/lef_zero.F lef_zero.F; fi if [ ! -L main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/main.F main.F; fi if [ ! -L master_cpu_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_io.F master_cpu_io.F; fi if [ ! -L master_cpu_thread.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_thread.F master_cpu_thread.F; fi if [ ! -L mds_byteswapi4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapi4.F mds_byteswapi4.F; fi if [ ! -L mds_byteswapr4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr4.F mds_byteswapr4.F; fi if [ ! -L mds_byteswapr8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr8.F mds_byteswapr8.F; fi if [ ! -L mdsfindunit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mdsfindunit.F mdsfindunit.F; fi if [ ! -L mds_flush.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_flush.F mds_flush.F; fi if [ ! -L mds_reclen.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_reclen.F mds_reclen.F; fi if [ ! -L memsync.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/memsync.F memsync.F; fi if [ ! -L nml_change_syntax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_change_syntax.F nml_change_syntax.F; fi if [ ! -L nml_set_terminator.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_set_terminator.F nml_set_terminator.F; fi if [ ! -L open_copy_data_file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/open_copy_data_file.F open_copy_data_file.F; fi if [ ! -L print.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/print.F print.F; fi if [ ! -L reset_halo.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/reset_halo.F reset_halo.F; fi if [ ! -L scatter_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r4.F scatter_2d_r4.F; fi if [ ! -L scatter_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r8.F scatter_2d_r8.F; fi if [ ! -L scatter_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r4.F scatter_2d_wh_r4.F; fi if [ ! -L scatter_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r8.F scatter_2d_wh_r8.F; fi if [ ! -L scatter_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r4.F scatter_vec_r4.F; fi if [ ! -L scatter_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r8.F scatter_vec_r8.F; fi if [ ! -L scatter_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_xz.F scatter_xz.F; fi if [ ! -L scatter_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_yz.F scatter_yz.F; fi if [ ! -L stop_if_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/stop_if_error.F stop_if_error.F; fi if [ ! -L timers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timers.F timers.F; fi if [ ! -L utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/utils.F utils.F; fi if [ ! -L write_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/write_utils.F write_utils.F; fi if [ ! -L adams_bashforth2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth2.F adams_bashforth2.F; fi if [ ! -L adams_bashforth3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth3.F adams_bashforth3.F; fi if [ ! -L add_walls2masks.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/add_walls2masks.F add_walls2masks.F; fi if [ ! -L apply_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/apply_forcing.F apply_forcing.F; fi if [ ! -L calc_3d_diffusivity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_3d_diffusivity.F calc_3d_diffusivity.F; fi if [ ! -L calc_adv_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_adv_flow.F calc_adv_flow.F; fi if [ ! -L calc_div_ghat.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_div_ghat.F calc_div_ghat.F; fi if [ ! -L calc_eddy_stress.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_eddy_stress.F calc_eddy_stress.F; fi if [ ! -L calc_grad_phi_fv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_fv.F calc_grad_phi_fv.F; fi if [ ! -L calc_grad_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_hyd.F calc_grad_phi_hyd.F; fi if [ ! -L calc_grad_phi_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_surf.F calc_grad_phi_surf.F; fi if [ ! -L calc_grid_angles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grid_angles.F calc_grid_angles.F; fi if [ ! -L calc_gw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_gw.F calc_gw.F; fi if [ ! -L calc_ivdc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_ivdc.F calc_ivdc.F; fi if [ ! -L calc_oce_mxlayer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_oce_mxlayer.F calc_oce_mxlayer.F; fi if [ ! -L calc_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_phi_hyd.F calc_phi_hyd.F; fi if [ ! -L calc_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_r_star.F calc_r_star.F; fi if [ ! -L calc_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_surf_dr.F calc_surf_dr.F; fi if [ ! -L calc_viscosity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_viscosity.F calc_viscosity.F; fi if [ ! -L calc_wsurf_tr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_wsurf_tr.F calc_wsurf_tr.F; fi if [ ! -L cg2d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_ex0.F cg2d_ex0.F; fi if [ ! -L cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d.F cg2d.F; fi if [ ! -L cg2d_nsa.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_nsa.F cg2d_nsa.F; fi if [ ! -L cg2d_sr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_sr.F cg2d_sr.F; fi if [ ! -L cg3d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d_ex0.F cg3d_ex0.F; fi if [ ! -L cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d.F cg3d.F; fi if [ ! -L check_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/check_pickup.F check_pickup.F; fi if [ ! -L config_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_check.F config_check.F; fi if [ ! -L config_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_summary.F config_summary.F; fi if [ ! -L convective_adjustment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment.F convective_adjustment.F; fi if [ ! -L convective_adjustment_ini.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment_ini.F convective_adjustment_ini.F; fi if [ ! -L convectively_mixtracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convectively_mixtracer.F convectively_mixtracer.F; fi if [ ! -L convective_weights.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_weights.F convective_weights.F; fi if [ ! -L correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/correction_step.F correction_step.F; fi if [ ! -L cycle_ab_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_ab_tracer.F cycle_ab_tracer.F; fi if [ ! -L cycle_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_tracer.F cycle_tracer.F; fi if [ ! -L diags_oceanic_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_oceanic_surf_flux.F diags_oceanic_surf_flux.F; fi if [ ! -L diags_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_hyd.F diags_phi_hyd.F; fi if [ ! -L diags_phi_rlow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_rlow.F diags_phi_rlow.F; fi if [ ! -L diags_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_rho.F diags_rho.F; fi if [ ! -L diags_sound_speed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_sound_speed.F diags_sound_speed.F; fi if [ ! -L do_atmospheric_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_atmospheric_phys.F do_atmospheric_phys.F; fi if [ ! -L do_fields_blocking_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_fields_blocking_exchanges.F do_fields_blocking_exchanges.F; fi if [ ! -L do_stagger_fields_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_stagger_fields_exchanges.F do_stagger_fields_exchanges.F; fi if [ ! -L do_statevars_diags.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_diags.F do_statevars_diags.F; fi if [ ! -L do_statevars_tave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_tave.F do_statevars_tave.F; fi if [ ! -L do_the_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_the_model_io.F do_the_model_io.F; fi if [ ! -L do_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_write_pickup.F do_write_pickup.F; fi if [ ! -L dynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/dynamics.F dynamics.F; fi if [ ! -L external_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_fields_load.F external_fields_load.F; fi if [ ! -L external_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing.F external_forcing.F; fi if [ ! -L external_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing_surf.F external_forcing_surf.F; fi if [ ! -L find_alpha.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_alpha.F find_alpha.F; fi if [ ! -L find_hyd_press_1d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_hyd_press_1d.F find_hyd_press_1d.F; fi if [ ! -L find_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_rho.F find_rho.F; fi if [ ! -L forcing_surf_relax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forcing_surf_relax.F forcing_surf_relax.F; fi if [ ! -L forward_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forward_step.F forward_step.F; fi if [ ! -L freesurf_rescale_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freesurf_rescale_g.F freesurf_rescale_g.F; fi if [ ! -L freeze_surface.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freeze_surface.F freeze_surface.F; fi if [ ! -L grad_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/grad_sigma.F grad_sigma.F; fi if [ ! -L gsw_teos10.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/gsw_teos10.F gsw_teos10.F; fi if [ ! -L impldiff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/impldiff.F impldiff.F; fi if [ ! -L ini_cartesian_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cartesian_grid.F ini_cartesian_grid.F; fi if [ ! -L ini_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg2d.F ini_cg2d.F; fi if [ ! -L ini_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg3d.F ini_cg3d.F; fi if [ ! -L ini_cori.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cori.F ini_cori.F; fi if [ ! -L ini_curvilinear_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_curvilinear_grid.F ini_curvilinear_grid.F; fi if [ ! -L ini_cylinder_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cylinder_grid.F ini_cylinder_grid.F; fi if [ ! -L ini_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_depths.F ini_depths.F; fi if [ ! -L ini_dynvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_dynvars.F ini_dynvars.F; fi if [ ! -L ini_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_eos.F ini_eos.F; fi if [ ! -L ini_ffields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_ffields.F ini_ffields.F; fi if [ ! -L ini_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_fields.F ini_fields.F; fi if [ ! -L ini_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_forcing.F ini_forcing.F; fi if [ ! -L ini_global_domain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_global_domain.F ini_global_domain.F; fi if [ ! -L ini_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_grid.F ini_grid.F; fi if [ ! -L ini_linear_phisurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_linear_phisurf.F ini_linear_phisurf.F; fi if [ ! -L ini_local_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_local_grid.F ini_local_grid.F; fi if [ ! -L ini_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_masks_etc.F ini_masks_etc.F; fi if [ ! -L ini_mixing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mixing.F ini_mixing.F; fi if [ ! -L ini_mnc_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mnc_vars.F ini_mnc_vars.F; fi if [ ! -L ini_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_model_io.F ini_model_io.F; fi if [ ! -L ini_nh_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_fields.F ini_nh_fields.F; fi if [ ! -L ini_nh_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_vars.F ini_nh_vars.F; fi if [ ! -L ini_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nlfs_vars.F ini_nlfs_vars.F; fi if [ ! -L ini_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_parms.F ini_parms.F; fi if [ ! -L ini_p_ground.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_p_ground.F ini_p_ground.F; fi if [ ! -L ini_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_pressure.F ini_pressure.F; fi if [ ! -L ini_psurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_psurf.F ini_psurf.F; fi if [ ! -L ini_salt.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_salt.F ini_salt.F; fi if [ ! -L ini_sigma_hfac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_sigma_hfac.F ini_sigma_hfac.F; fi if [ ! -L ini_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_spherical_polar_grid.F ini_spherical_polar_grid.F; fi if [ ! -L ini_theta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_theta.F ini_theta.F; fi if [ ! -L initialise_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_fixed.F initialise_fixed.F; fi if [ ! -L initialise_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_varia.F initialise_varia.F; fi if [ ! -L ini_vel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vel.F ini_vel.F; fi if [ ! -L ini_vertical_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vertical_grid.F ini_vertical_grid.F; fi if [ ! -L integrate_for_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integrate_for_w.F integrate_for_w.F; fi if [ ! -L integr_continuity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integr_continuity.F integr_continuity.F; fi if [ ! -L load_fields_driver.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_fields_driver.F load_fields_driver.F; fi if [ ! -L load_grid_spacing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_grid_spacing.F load_grid_spacing.F; fi if [ ! -L load_ref_files.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_ref_files.F load_ref_files.F; fi if [ ! -L main_do_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/main_do_loop.F main_do_loop.F; fi if [ ! -L momentum_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/momentum_correction_step.F momentum_correction_step.F; fi if [ ! -L packages_boot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_boot.F packages_boot.F; fi if [ ! -L packages_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_check.F packages_check.F; fi if [ ! -L packages_error_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_error_msg.F packages_error_msg.F; fi if [ ! -L packages_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_fixed.F packages_init_fixed.F; fi if [ ! -L packages_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_variables.F packages_init_variables.F; fi if [ ! -L packages_print_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_print_msg.F packages_print_msg.F; fi if [ ! -L packages_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_readparms.F packages_readparms.F; fi if [ ! -L packages_unused_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_unused_msg.F packages_unused_msg.F; fi if [ ! -L packages_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_write_pickup.F packages_write_pickup.F; fi if [ ! -L plot_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/plot_field.F plot_field.F; fi if [ ! -L port_rand.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/port_rand.F port_rand.F; fi if [ ! -L post_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/post_cg3d.F post_cg3d.F; fi if [ ! -L pre_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pre_cg3d.F pre_cg3d.F; fi if [ ! -L pressure_for_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pressure_for_eos.F pressure_for_eos.F; fi if [ ! -L read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/read_pickup.F read_pickup.F; fi if [ ! -L remove_mean.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/remove_mean.F remove_mean.F; fi if [ ! -L reset_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/reset_nlfs_vars.F reset_nlfs_vars.F; fi if [ ! -L rotate_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_spherical_polar_grid.F rotate_spherical_polar_grid.F; fi if [ ! -L rotate_uv2en.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_uv2en.F rotate_uv2en.F; fi if [ ! -L salt_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/salt_integrate.F salt_integrate.F; fi if [ ! -L seawater.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/seawater.F seawater.F; fi if [ ! -L set_defaults.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_defaults.F set_defaults.F; fi if [ ! -L set_grid_factors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_grid_factors.F set_grid_factors.F; fi if [ ! -L set_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_parms.F set_parms.F; fi if [ ! -L set_ref_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_ref_state.F set_ref_state.F; fi if [ ! -L solve_for_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_for_pressure.F solve_for_pressure.F; fi if [ ! -L solve_pentadiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_pentadiagonal.F solve_pentadiagonal.F; fi if [ ! -L solve_tridiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_tridiagonal.F solve_tridiagonal.F; fi if [ ! -L solve_uv_tridiago.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_uv_tridiago.F solve_uv_tridiago.F; fi if [ ! -L state_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/state_summary.F state_summary.F; fi if [ ! -L swfrac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/swfrac.F swfrac.F; fi if [ ! -L taueddy_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_init_varia.F taueddy_init_varia.F; fi if [ ! -L taueddy_tendency_apply.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_tendency_apply.F taueddy_tendency_apply.F; fi if [ ! -L temp_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/temp_integrate.F temp_integrate.F; fi if [ ! -L the_main_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_main_loop.F the_main_loop.F; fi if [ ! -L the_model_main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_model_main.F the_model_main.F; fi if [ ! -L thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/thermodynamics.F thermodynamics.F; fi if [ ! -L timestep.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep.F timestep.F; fi if [ ! -L timestep_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_tracer.F timestep_tracer.F; fi if [ ! -L timestep_wvel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_wvel.F timestep_wvel.F; fi if [ ! -L tracers_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_correction_step.F tracers_correction_step.F; fi if [ ! -L tracers_iigw_correction.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_iigw_correction.F tracers_iigw_correction.F; fi if [ ! -L turnoff_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/turnoff_model_io.F turnoff_model_io.F; fi if [ ! -L update_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_cg2d.F update_cg2d.F; fi if [ ! -L update_etah.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etah.F update_etah.F; fi if [ ! -L update_etaws.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etaws.F update_etaws.F; fi if [ ! -L update_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_masks_etc.F update_masks_etc.F; fi if [ ! -L update_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_r_star.F update_r_star.F; fi if [ ! -L update_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_sigma.F update_sigma.F; fi if [ ! -L update_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_surf_dr.F update_surf_dr.F; fi if [ ! -L write_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_grid.F write_grid.F; fi if [ ! -L write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_pickup.F write_pickup.F; fi if [ ! -L write_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_state.F write_state.F; fi if [ ! -L gsl_ieee_env.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsl_ieee_env.c gsl_ieee_env.c; fi if [ ! -L ptwrapper.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ptwrapper.c ptwrapper.c; fi if [ ! -L setdir.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setdir.c setdir.c; fi if [ ! -L setrlstk.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setrlstk.c setrlstk.c; fi if [ ! -L sigreg.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/sigreg.c sigreg.c; fi if [ ! -L tim.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/tim.c tim.c; fi if [ ! -L timer_stats.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timer_stats.c timer_stats.c; fi if [ ! -L CPP_EEOPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h CPP_EEOPTIONS.h; fi if [ ! -L SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/SIZE.h SIZE.h; fi if [ ! -L DEBUG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/DEBUG_OPTIONS.h DEBUG_OPTIONS.h; fi if [ ! -L DIAGNOSTICS_CALC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_CALC.h DIAGNOSTICS_CALC.h; fi if [ ! -L DIAGNOSTICS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS.h DIAGNOSTICS.h; fi if [ ! -L DIAGNOSTICS_SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_SIZE.h DIAGNOSTICS_SIZE.h; fi if [ ! -L DIAG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAG_OPTIONS.h DIAG_OPTIONS.h; fi if [ ! -L DIAGSTATS_REGIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGSTATS_REGIONS.h DIAGSTATS_REGIONS.h; fi if [ ! -L gad_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev1_dir.h gad_ad_check_lev1_dir.h; fi if [ ! -L gad_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev2_dir.h gad_ad_check_lev2_dir.h; fi if [ ! -L gad_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev3_dir.h gad_ad_check_lev3_dir.h; fi if [ ! -L gad_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev4_dir.h gad_ad_check_lev4_dir.h; fi if [ ! -L GAD_FLUX_LIMITER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_FLUX_LIMITER.h GAD_FLUX_LIMITER.h; fi if [ ! -L GAD.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD.h GAD.h; fi if [ ! -L GAD_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_OPTIONS.h GAD_OPTIONS.h; fi if [ ! -L GAD_SOM_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_SOM_VARS.h GAD_SOM_VARS.h; fi if [ ! -L MDSIO_BUFF_3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_3D.h MDSIO_BUFF_3D.h; fi if [ ! -L MDSIO_BUFF_WH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_WH.h MDSIO_BUFF_WH.h; fi if [ ! -L MDSIO_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_OPTIONS.h MDSIO_OPTIONS.h; fi if [ ! -L MOM_COMMON_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_COMMON_OPTIONS.h MOM_COMMON_OPTIONS.h; fi if [ ! -L MOM_VISC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_VISC.h MOM_VISC.h; fi if [ ! -L MOM_FLUXFORM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM.h MOM_FLUXFORM.h; fi if [ ! -L MOM_FLUXFORM_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MOM_FLUXFORM_OPTIONS.h; fi if [ ! -L MOM_VECINV_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MOM_VECINV_OPTIONS.h; fi if [ ! -L MONITOR.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR.h MONITOR.h; fi if [ ! -L MONITOR_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR_OPTIONS.h MONITOR_OPTIONS.h; fi if [ ! -L obcs_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev1_dir.h obcs_ad_check_lev1_dir.h; fi if [ ! -L obcs_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev2_dir.h obcs_ad_check_lev2_dir.h; fi if [ ! -L obcs_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev3_dir.h obcs_ad_check_lev3_dir.h; fi if [ ! -L obcs_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev4_dir.h obcs_ad_check_lev4_dir.h; fi if [ ! -L OBCS_FIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_FIELDS.h OBCS_FIELDS.h; fi if [ ! -L OBCS_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_GRID.h OBCS_GRID.h; fi if [ ! -L OBCS_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_OPTIONS.h OBCS_OPTIONS.h; fi if [ ! -L OBCS_PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PARAMS.h OBCS_PARAMS.h; fi if [ ! -L OBCS_PTRACERS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PTRACERS.h OBCS_PTRACERS.h; fi if [ ! -L OBCS_SEAICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_SEAICE.h OBCS_SEAICE.h; fi if [ ! -L ORLANSKI.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/ORLANSKI.h ORLANSKI.h; fi if [ ! -L RW_MFLDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_MFLDS.h RW_MFLDS.h; fi if [ ! -L RW_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_OPTIONS.h RW_OPTIONS.h; fi if [ ! -L shelfice_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev1_dir.h shelfice_ad_check_lev1_dir.h; fi if [ ! -L shelfice_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev2_dir.h shelfice_ad_check_lev2_dir.h; fi if [ ! -L shelfice_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev3_dir.h shelfice_ad_check_lev3_dir.h; fi if [ ! -L shelfice_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev4_dir.h shelfice_ad_check_lev4_dir.h; fi if [ ! -L SHELFICE_COST.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_COST.h SHELFICE_COST.h; fi if [ ! -L SHELFICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE.h SHELFICE.h; fi if [ ! -L SHELFICE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_OPTIONS.h SHELFICE_OPTIONS.h; fi if [ ! -L SHELFICE_TAVE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_TAVE.h SHELFICE_TAVE.h; fi if [ ! -L TIMEAVE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_OPTIONS.h TIMEAVE_OPTIONS.h; fi if [ ! -L TIMEAVE_STATV.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_STATV.h TIMEAVE_STATV.h; fi if [ ! -L cmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_c.h cmumps_c.h; fi if [ ! -L cmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_root.h cmumps_root.h; fi if [ ! -L cmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_struc.h cmumps_struc.h; fi if [ ! -L dmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_c.h dmumps_c.h; fi if [ ! -L dmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_root.h dmumps_root.h; fi if [ ! -L dmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_struc.h dmumps_struc.h; fi if [ ! -L gklib_defs.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_defs.h gklib_defs.h; fi if [ ! -L gklib_rename.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_rename.h gklib_rename.h; fi if [ ! -L gklib_tls.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_tls.h gklib_tls.h; fi if [ ! -L metis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/metis.h metis.h; fi if [ ! -L mpicxx.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpicxx.h mpicxx.h; fi if [ ! -L mpif.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpif.h mpif.h; fi if [ ! -L mpi.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi.h mpi.h; fi if [ ! -L mpiof.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpiof.h mpiof.h; fi if [ ! -L mpio.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpio.h mpio.h; fi if [ ! -L mpi_proto.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi_proto.h mpi_proto.h; fi if [ ! -L mumps_compat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_compat.h mumps_compat.h; fi if [ ! -L mumps_c_types.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_c_types.h mumps_c_types.h; fi if [ ! -L mumps_int_def.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_int_def.h mumps_int_def.h; fi if [ ! -L parmetis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/parmetis.h parmetis.h; fi if [ ! -L petscao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscao.h petscao.h; fi if [ ! -L petscbag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbag.h petscbag.h; fi if [ ! -L petscblaslapack.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack.h petscblaslapack.h; fi if [ ! -L petscblaslapack_mangle.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack_mangle.h petscblaslapack_mangle.h; fi if [ ! -L petscbm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbm.h petscbm.h; fi if [ ! -L petscbt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbt.h petscbt.h; fi if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi if [ ! -L petscctable.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscctable.h petscctable.h; fi if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi if [ ! -L petscdmadaptortypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptortypes.h petscdmadaptortypes.h; fi if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi if [ ! -L petscsnestypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnestypes.h petscsnestypes.h; fi if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi if [ ! -L petsctao_deprecations.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao_deprecations.h petsctao_deprecations.h; fi if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi Creating FC_NAMEMANGLE.h ... echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h Creating BUILD_INFO.h ... echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h echo "#define THISDATE 'Tue Jul 22 01:10:23 AM PDT 2025'" >> BUILD_INFO.h echo "#define THISHOST 'Debian-12-VM'" >> BUILD_INFO.h make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/12/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F Appending dependencies to Makefile /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile WARNING: f90mkdepend: no source file found for module `petscdtbinomial()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `petsccalla()`. WARNING: f90mkdepend: no source file found for module `chkmema` WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()` WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser` WARNING: f90mkdepend: no source file found for module this WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()` WARNING: f90mkdepend: no source file found for module `mpiu_sf_node` WARNING: f90mkdepend: no source file found for module `petsc_null_integer` WARNING: f90mkdepend: no source file found for module `petsc_unlimited_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide_integer` WARNING: f90mkdepend: no source file found for module `petsc_determine_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide` WARNING: f90mkdepend: no source file found for module `petsc_current_integer` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module the WARNING: f90mkdepend: no source file found for module `petscclassidregister()` WARNING: f90mkdepend: no source file found for module `petsccount_fmt` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()` rm -f makedepend.out [41;37m step #6: RunUncoupledMITgcm [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END [41;37m step #7: CreateMesh [0m Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0) saving model as: Models/IceOcean.CreateMesh [41;37m step #8: MeshGeometry [0m saving model as: Models/IceOcean.MeshGeometry [41;37m step #9: ParameterizeIce [0m saving model as: Models/IceOcean.ParameterizeIce [41;37m step #10: RunUncoupledISSM [0m checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind and https://petsc.org/release/faq/ [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: Run with -malloc_debug to check if memory corruption is causing the crash. application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 loading results from cluster cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-07-22-2025-01-13-56-3250578//test4001.outbin': No such file or directory Error using loadresultsfromdisk ========================================================================= Binary file test4001.outbin not found This typically results from an error encountered during the simulation Please check for error messages above or in the outlog ========================================================================= Error in loadresultsfromcluster (line 50) md=loadresultsfromdisk(md,[md.miscellaneous.name '.outbin']); Error in solve (line 180) md=loadresultsfromcluster(md); Error in test4001 (line 556) md=solve(md,'Transient'); Error in run (line 99) evalin('caller', strcat(script, ';')); Error in runme (line 156) run(['test' num2str(id)]); Error in matlab_run2 (line 3) runme('benchmark','all','id',[4001],'output','nightly','rank',2,'numprocs',2);FAILURE difference: N/A test id: 4001 test name: IceOcean field: N/A +++ exit code: 0 +++ error: 1 ----------MATLAB exited in error!---------- < M A T L A B (R) > Copyright 1984-2023 The MathWorks, Inc. R2023b Update 8 (23.2.0.2599560) 64-bit (glnxa64) April 29, 2024 To get started, type doc. For product information, visit www.mathworks.com. ISSM development path correctly loaded MATLABEXITEDCORRECTLY < M A T L A B (R) > Copyright 1984-2023 The MathWorks, Inc. R2023b Update 8 (23.2.0.2599560) 64-bit (glnxa64) April 29, 2024 To get started, type doc. For product information, visit www.mathworks.com. ISSM development path correctly loaded ----------------starting:4001----------------------- [41;37m step #1: Parameters [0m saving data in: Models/IceOcean.Parameters [41;37m step #2: Bathymetry [0m saving data in: Models/IceOcean.Bathymetry [41;37m step #3: IceSheetGeometry [0m saving data in: Models/IceOcean.IceSheetGeometry [41;37m step #4: GetMITgcm [0m --2025-07-22 01:10:09-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz Resolving github.com (github.com)... 140.82.116.3 Connecting to github.com (github.com)|140.82.116.3|:443... connected. HTTP request sent, awaiting response... 302 Found Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following] --2025-07-22 01:10:09-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i Resolving codeload.github.com (codeload.github.com)... 140.82.116.9 Connecting to codeload.github.com (codeload.github.com)|140.82.116.9|:443... connected. 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[ <=> ] 140.75M 15.0MB/s checkpoint68i.tar.g [ <=> ] 143.75M 14.8MB/s checkpoint68i.tar.g [ <=> ] 147.17M 14.9MB/s checkpoint68i.tar.g [ <=> ] 150.42M 14.9MB/s checkpoint68i.tar.g [ <=> ] 153.66M 14.7MB/s checkpoint68i.tar.g [ <=> ] 155.50M 14.4MB/s checkpoint68i.tar.g [ <=> ] 158.50M 14.4MB/s checkpoint68i.tar.g [ <=> ] 162.50M 15.1MB/s checkpoint68i.tar.g [ <=> ] 164.87M 15.0MB/s in 10s 2025-07-22 01:10:20 (16.2 MB/s) - checkpoint68i.tar.gz saved [172875785] MITgcm-checkpoint68i/ MITgcm-checkpoint68i/.github/ MITgcm-checkpoint68i/.github/ISSUE_TEMPLATE.md MITgcm-checkpoint68i/.github/PULL_REQUEST_TEMPLATE.md MITgcm-checkpoint68i/.github/workflows/ MITgcm-checkpoint68i/.github/workflows/build_testing.yml MITgcm-checkpoint68i/.gitignore MITgcm-checkpoint68i/.readthedocs.yml MITgcm-checkpoint68i/LICENSE.txt MITgcm-checkpoint68i/README.md MITgcm-checkpoint68i/doc/ MITgcm-checkpoint68i/doc/Makefile MITgcm-checkpoint68i/doc/_extensions/ MITgcm-checkpoint68i/doc/_extensions/mitgcm.py 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MITgcm-checkpoint68i/eesupp/src/exch1_rx.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_rx_cube_ad.template MITgcm-checkpoint68i/eesupp/src/exch1_uv_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch1_z_rx_cube.template MITgcm-checkpoint68i/eesupp/src/exch_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_ad_diff.list MITgcm-checkpoint68i/eesupp/src/exch_cycle_ebl.F MITgcm-checkpoint68i/eesupp/src/exch_init.F MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_recv_get_y.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_x.template MITgcm-checkpoint68i/eesupp/src/exch_rx_send_put_y.template MITgcm-checkpoint68i/eesupp/src/exch_s3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_sm_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_agrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_uv_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xy_rx.template MITgcm-checkpoint68i/eesupp/src/exch_xyz_rx.template MITgcm-checkpoint68i/eesupp/src/exch_z_3d_rx.template MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_ag_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_tr_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rl.F MITgcm-checkpoint68i/eesupp/src/fill_cs_corner_uv_rs.F MITgcm-checkpoint68i/eesupp/src/fool_the_compiler.F MITgcm-checkpoint68i/eesupp/src/gather_2d_rx.template MITgcm-checkpoint68i/eesupp/src/gather_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/gather_vec_rx.template MITgcm-checkpoint68i/eesupp/src/gather_xz.F MITgcm-checkpoint68i/eesupp/src/gather_yz.F MITgcm-checkpoint68i/eesupp/src/get_periodic_interval.F MITgcm-checkpoint68i/eesupp/src/global_max.F MITgcm-checkpoint68i/eesupp/src/global_sum.F MITgcm-checkpoint68i/eesupp/src/global_sum_singlecpu.F MITgcm-checkpoint68i/eesupp/src/global_sum_tile.F MITgcm-checkpoint68i/eesupp/src/global_vec_sum.F MITgcm-checkpoint68i/eesupp/src/gsl_ieee_env.c MITgcm-checkpoint68i/eesupp/src/gsum.F MITgcm-checkpoint68i/eesupp/src/ini_communication_patterns.F MITgcm-checkpoint68i/eesupp/src/ini_procs.F MITgcm-checkpoint68i/eesupp/src/ini_threading_environment.F MITgcm-checkpoint68i/eesupp/src/lef_zero.F MITgcm-checkpoint68i/eesupp/src/main.F MITgcm-checkpoint68i/eesupp/src/master_cpu_io.F MITgcm-checkpoint68i/eesupp/src/master_cpu_thread.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapi4.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapr4.F MITgcm-checkpoint68i/eesupp/src/mds_byteswapr8.F MITgcm-checkpoint68i/eesupp/src/mds_flush.F MITgcm-checkpoint68i/eesupp/src/mds_reclen.F MITgcm-checkpoint68i/eesupp/src/mdsfindunit.F MITgcm-checkpoint68i/eesupp/src/memsync.F MITgcm-checkpoint68i/eesupp/src/nml_change_syntax.F MITgcm-checkpoint68i/eesupp/src/nml_set_terminator.F MITgcm-checkpoint68i/eesupp/src/open_copy_data_file.F MITgcm-checkpoint68i/eesupp/src/print.F MITgcm-checkpoint68i/eesupp/src/ptwrapper.c MITgcm-checkpoint68i/eesupp/src/reset_halo.F MITgcm-checkpoint68i/eesupp/src/scatter_2d_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_2d_wh_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_vec_rx.template MITgcm-checkpoint68i/eesupp/src/scatter_xz.F MITgcm-checkpoint68i/eesupp/src/scatter_yz.F MITgcm-checkpoint68i/eesupp/src/setdir.c MITgcm-checkpoint68i/eesupp/src/setrlstk.c MITgcm-checkpoint68i/eesupp/src/sigreg.c MITgcm-checkpoint68i/eesupp/src/stop_if_error.F MITgcm-checkpoint68i/eesupp/src/tim.c MITgcm-checkpoint68i/eesupp/src/timer_stats.c MITgcm-checkpoint68i/eesupp/src/timers.F MITgcm-checkpoint68i/eesupp/src/utils.F MITgcm-checkpoint68i/eesupp/src/write_utils.F MITgcm-checkpoint68i/jobs/ MITgcm-checkpoint68i/jobs/run_mitgcm_aer.csh MITgcm-checkpoint68i/jobs/run_mitgcm_eaps.csh MITgcm-checkpoint68i/jobs/run_mitgcm_gfdl.csh MITgcm-checkpoint68i/jobs/run_mitgcm_itrda.csh MITgcm-checkpoint68i/jobs/run_mitgcm_sp4_bluesky.csh MITgcm-checkpoint68i/jobs/run_optim.csh MITgcm-checkpoint68i/lsopt/ MITgcm-checkpoint68i/lsopt/Makefile MITgcm-checkpoint68i/lsopt/Makefile_macosx MITgcm-checkpoint68i/lsopt/README.md MITgcm-checkpoint68i/lsopt/blas1.h MITgcm-checkpoint68i/lsopt/cubic.F MITgcm-checkpoint68i/lsopt/data.ctrl MITgcm-checkpoint68i/lsopt/data.ecco MITgcm-checkpoint68i/lsopt/data.optim MITgcm-checkpoint68i/lsopt/dgscale.F MITgcm-checkpoint68i/lsopt/dostore.F MITgcm-checkpoint68i/lsopt/hessupd.F MITgcm-checkpoint68i/lsopt/instore.F MITgcm-checkpoint68i/lsopt/libblas1.a_IRIX64.gz MITgcm-checkpoint68i/lsopt/libblas1.a_SUN.gz MITgcm-checkpoint68i/lsopt/libgoto_it2-r0.95.so.gz MITgcm-checkpoint68i/lsopt/libgoto_p4_512-r0.94.so.gz MITgcm-checkpoint68i/lsopt/lsline.F MITgcm-checkpoint68i/lsopt/lsopt_doc.txt MITgcm-checkpoint68i/lsopt/lsopt_top.F MITgcm-checkpoint68i/lsopt/lsupdxx.F MITgcm-checkpoint68i/lsopt/lswri.F MITgcm-checkpoint68i/lsopt/outstore.F MITgcm-checkpoint68i/model/ MITgcm-checkpoint68i/model/inc/ MITgcm-checkpoint68i/model/inc/CG2D.h MITgcm-checkpoint68i/model/inc/CG3D.h MITgcm-checkpoint68i/model/inc/CPP_OPTIONS.h MITgcm-checkpoint68i/model/inc/DXC_MACROS.h MITgcm-checkpoint68i/model/inc/DXF_MACROS.h MITgcm-checkpoint68i/model/inc/DXG_MACROS.h MITgcm-checkpoint68i/model/inc/DXV_MACROS.h MITgcm-checkpoint68i/model/inc/DYC_MACROS.h MITgcm-checkpoint68i/model/inc/DYF_MACROS.h MITgcm-checkpoint68i/model/inc/DYG_MACROS.h MITgcm-checkpoint68i/model/inc/DYNVARS.h MITgcm-checkpoint68i/model/inc/DYU_MACROS.h MITgcm-checkpoint68i/model/inc/EOS.h MITgcm-checkpoint68i/model/inc/FCORI_MACROS.h MITgcm-checkpoint68i/model/inc/FFIELDS.h MITgcm-checkpoint68i/model/inc/GRID.h MITgcm-checkpoint68i/model/inc/GRID_MACROS.h 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MITgcm-checkpoint68i/model/inc/RESTART.h MITgcm-checkpoint68i/model/inc/SET_GRID.h MITgcm-checkpoint68i/model/inc/SIZE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE.h MITgcm-checkpoint68i/model/inc/SOLVE_FOR_PRESSURE3D.h MITgcm-checkpoint68i/model/inc/SURFACE.h MITgcm-checkpoint68i/model/inc/TANPHIATU_MACROS.h MITgcm-checkpoint68i/model/inc/TANPHIATV_MACROS.h MITgcm-checkpoint68i/model/inc/THE_MODEL_COMMON_BLOCKS.h MITgcm-checkpoint68i/model/inc/XC_MACROS.h MITgcm-checkpoint68i/model/inc/YC_MACROS.h MITgcm-checkpoint68i/model/src/ MITgcm-checkpoint68i/model/src/adams_bashforth2.F MITgcm-checkpoint68i/model/src/adams_bashforth3.F MITgcm-checkpoint68i/model/src/add_walls2masks.F MITgcm-checkpoint68i/model/src/apply_forcing.F MITgcm-checkpoint68i/model/src/calc_3d_diffusivity.F MITgcm-checkpoint68i/model/src/calc_adv_flow.F MITgcm-checkpoint68i/model/src/calc_div_ghat.F MITgcm-checkpoint68i/model/src/calc_eddy_stress.F MITgcm-checkpoint68i/model/src/calc_grad_phi_fv.F 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MITgcm-checkpoint68i/model/src/update_etah.F MITgcm-checkpoint68i/model/src/update_etaws.F MITgcm-checkpoint68i/model/src/update_masks_etc.F MITgcm-checkpoint68i/model/src/update_r_star.F MITgcm-checkpoint68i/model/src/update_sigma.F MITgcm-checkpoint68i/model/src/update_surf_dr.F MITgcm-checkpoint68i/model/src/write_grid.F MITgcm-checkpoint68i/model/src/write_pickup.F MITgcm-checkpoint68i/model/src/write_state.F MITgcm-checkpoint68i/optim/ MITgcm-checkpoint68i/optim/Makefile MITgcm-checkpoint68i/optim/Makefile_macosx MITgcm-checkpoint68i/optim/README.md MITgcm-checkpoint68i/optim/blas1.h MITgcm-checkpoint68i/optim/data.ctrl MITgcm-checkpoint68i/optim/data.ecco MITgcm-checkpoint68i/optim/data.optim MITgcm-checkpoint68i/optim/flowchart_optim.txt MITgcm-checkpoint68i/optim/minimization.h MITgcm-checkpoint68i/optim/optim.h MITgcm-checkpoint68i/optim/optim_initmod.F MITgcm-checkpoint68i/optim/optim_main.F MITgcm-checkpoint68i/optim/optim_numbmod.F MITgcm-checkpoint68i/optim/optim_readdata.F MITgcm-checkpoint68i/optim/optim_sub.F MITgcm-checkpoint68i/optim/optim_write_control.F MITgcm-checkpoint68i/optim/optim_writedata.F MITgcm-checkpoint68i/optim/simul.F MITgcm-checkpoint68i/optim/to_do.txt MITgcm-checkpoint68i/optim/utils.F MITgcm-checkpoint68i/optim/xerbla.F MITgcm-checkpoint68i/pkg/ MITgcm-checkpoint68i/pkg/admtlm/ MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h MITgcm-checkpoint68i/pkg/aim_v23/ MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F 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MITgcm-checkpoint68i/pkg/autodiff/g_dummy_in_stepping.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_max_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.F MITgcm-checkpoint68i/pkg/autodiff/global_sum_ad.flow MITgcm-checkpoint68i/pkg/autodiff/global_sum_tile_ad.F MITgcm-checkpoint68i/pkg/autodiff/initialisation.flow MITgcm-checkpoint68i/pkg/autodiff/model_ad.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.F MITgcm-checkpoint68i/pkg/autodiff/myactivefunction.flow MITgcm-checkpoint68i/pkg/autodiff/myactivefunction_ad.F MITgcm-checkpoint68i/pkg/autodiff/system.flow MITgcm-checkpoint68i/pkg/autodiff/tamc.h MITgcm-checkpoint68i/pkg/autodiff/zero_adj.F MITgcm-checkpoint68i/pkg/autodiff/zero_adj.flow MITgcm-checkpoint68i/pkg/bbl/ MITgcm-checkpoint68i/pkg/bbl/BBL.h MITgcm-checkpoint68i/pkg/bbl/BBL_OPTIONS.h MITgcm-checkpoint68i/pkg/bbl/bbl_ad.flow MITgcm-checkpoint68i/pkg/bbl/bbl_ad_diff.list MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rho.F MITgcm-checkpoint68i/pkg/bbl/bbl_calc_rhs.F MITgcm-checkpoint68i/pkg/bbl/bbl_check.F MITgcm-checkpoint68i/pkg/bbl/bbl_description.tex MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_init.F MITgcm-checkpoint68i/pkg/bbl/bbl_diagnostics_state.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_fixed.F MITgcm-checkpoint68i/pkg/bbl/bbl_init_varia.F MITgcm-checkpoint68i/pkg/bbl/bbl_read_pickup.F MITgcm-checkpoint68i/pkg/bbl/bbl_readparms.F MITgcm-checkpoint68i/pkg/bbl/bbl_tendency_apply.F MITgcm-checkpoint68i/pkg/bbl/bbl_write_pickup.F MITgcm-checkpoint68i/pkg/bling/ MITgcm-checkpoint68i/pkg/bling/BLING_LOAD.h MITgcm-checkpoint68i/pkg/bling/BLING_OPTIONS.h MITgcm-checkpoint68i/pkg/bling/BLING_VARS.h MITgcm-checkpoint68i/pkg/bling/CHANGES_TO_BLING.txt MITgcm-checkpoint68i/pkg/bling/bling_ad.flow MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/bling/bling_ad_diff.list MITgcm-checkpoint68i/pkg/bling/bling_airseaflux.F MITgcm-checkpoint68i/pkg/bling/bling_bio.F MITgcm-checkpoint68i/pkg/bling/bling_bio_nitrogen.F MITgcm-checkpoint68i/pkg/bling/bling_carbon_chem.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_init.F MITgcm-checkpoint68i/pkg/bling/bling_carbonate_sys.F MITgcm-checkpoint68i/pkg/bling/bling_description.txt MITgcm-checkpoint68i/pkg/bling/bling_diagnostics_init.F MITgcm-checkpoint68i/pkg/bling/bling_fields_load.F MITgcm-checkpoint68i/pkg/bling/bling_ini_forcing.F MITgcm-checkpoint68i/pkg/bling/bling_init_fixed.F MITgcm-checkpoint68i/pkg/bling/bling_init_varia.F MITgcm-checkpoint68i/pkg/bling/bling_light.F MITgcm-checkpoint68i/pkg/bling/bling_main.F MITgcm-checkpoint68i/pkg/bling/bling_min_val.F MITgcm-checkpoint68i/pkg/bling/bling_mixedlayer.F MITgcm-checkpoint68i/pkg/bling/bling_read_pickup.F MITgcm-checkpoint68i/pkg/bling/bling_readparms.F MITgcm-checkpoint68i/pkg/bling/bling_sgs.F MITgcm-checkpoint68i/pkg/bling/bling_solvesaphe.F MITgcm-checkpoint68i/pkg/bling/bling_tr_register.F MITgcm-checkpoint68i/pkg/bling/bling_write_pickup.F MITgcm-checkpoint68i/pkg/bulk_force/ MITgcm-checkpoint68i/pkg/bulk_force/BULKF.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_CONSERV.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_INT.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_PARAMS.h MITgcm-checkpoint68i/pkg/bulk_force/BULKF_TAVE.h MITgcm-checkpoint68i/pkg/bulk_force/BULK_FORCE_OPTIONS.h MITgcm-checkpoint68i/pkg/bulk_force/bulkf_ave.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_fields_load.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_flux_adjust.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_forcing.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_aim.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lanl.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_formula_lay.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_init_varia.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_output.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_readparms.F MITgcm-checkpoint68i/pkg/bulk_force/bulkf_sh2rh_aim.F MITgcm-checkpoint68i/pkg/cal/ MITgcm-checkpoint68i/pkg/cal/CAL_OPTIONS.h MITgcm-checkpoint68i/pkg/cal/cal.h MITgcm-checkpoint68i/pkg/cal/cal_ad_diff.list MITgcm-checkpoint68i/pkg/cal/cal_addtime.F MITgcm-checkpoint68i/pkg/cal/cal_checkdate.F MITgcm-checkpoint68i/pkg/cal/cal_compdates.F MITgcm-checkpoint68i/pkg/cal/cal_convdate.F MITgcm-checkpoint68i/pkg/cal/cal_copydate.F MITgcm-checkpoint68i/pkg/cal/cal_daysformonth.F MITgcm-checkpoint68i/pkg/cal/cal_dayspermonth.F MITgcm-checkpoint68i/pkg/cal/cal_description.tex MITgcm-checkpoint68i/pkg/cal/cal_fulldate.F MITgcm-checkpoint68i/pkg/cal/cal_getdate.F MITgcm-checkpoint68i/pkg/cal/cal_getmonthsrec.F MITgcm-checkpoint68i/pkg/cal/cal_init_fixed.F MITgcm-checkpoint68i/pkg/cal/cal_intdays.F MITgcm-checkpoint68i/pkg/cal/cal_intmonths.F MITgcm-checkpoint68i/pkg/cal/cal_intyears.F MITgcm-checkpoint68i/pkg/cal/cal_isleap.F MITgcm-checkpoint68i/pkg/cal/cal_monthsforyear.F MITgcm-checkpoint68i/pkg/cal/cal_monthsperyear.F MITgcm-checkpoint68i/pkg/cal/cal_numints.F MITgcm-checkpoint68i/pkg/cal/cal_printdate.F MITgcm-checkpoint68i/pkg/cal/cal_printerror.F MITgcm-checkpoint68i/pkg/cal/cal_readparms.F MITgcm-checkpoint68i/pkg/cal/cal_set.F MITgcm-checkpoint68i/pkg/cal/cal_stepsforday.F MITgcm-checkpoint68i/pkg/cal/cal_stepsperday.F MITgcm-checkpoint68i/pkg/cal/cal_subdates.F MITgcm-checkpoint68i/pkg/cal/cal_summary.F MITgcm-checkpoint68i/pkg/cal/cal_time2dump.F MITgcm-checkpoint68i/pkg/cal/cal_timeinterval.F MITgcm-checkpoint68i/pkg/cal/cal_timepassed.F MITgcm-checkpoint68i/pkg/cal/cal_timestamp.F MITgcm-checkpoint68i/pkg/cal/cal_toseconds.F MITgcm-checkpoint68i/pkg/cal/cal_weekday.F MITgcm-checkpoint68i/pkg/cd_code/ MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_OPTIONS.h MITgcm-checkpoint68i/pkg/cd_code/CD_CODE_VARS.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad.flow MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cd_code/cd_code_ad_diff.list MITgcm-checkpoint68i/pkg/cd_code/cd_code_ini_vars.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_init_fixed.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_read_pickup.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_scheme.F MITgcm-checkpoint68i/pkg/cd_code/cd_code_write_pickup.F MITgcm-checkpoint68i/pkg/cfc/ MITgcm-checkpoint68i/pkg/cfc/CFC.h MITgcm-checkpoint68i/pkg/cfc/CFC_ATMOS.h MITgcm-checkpoint68i/pkg/cfc/CFC_SIZE.h MITgcm-checkpoint68i/pkg/cfc/cfc11_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc11_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_forcing.F MITgcm-checkpoint68i/pkg/cfc/cfc12_surfforcing.F MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/cfc/cfc_ad_diff.list MITgcm-checkpoint68i/pkg/cfc/cfc_atmos.F MITgcm-checkpoint68i/pkg/cfc/cfc_check.F MITgcm-checkpoint68i/pkg/cfc/cfc_fields_load.F MITgcm-checkpoint68i/pkg/cfc/cfc_param.F MITgcm-checkpoint68i/pkg/cfc/cfc_readparms.F MITgcm-checkpoint68i/pkg/cfc/cfc_tr_register.F MITgcm-checkpoint68i/pkg/cheapaml/ MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML.h MITgcm-checkpoint68i/pkg/cheapaml/CHEAPAML_OPTIONS.h MITgcm-checkpoint68i/pkg/cheapaml/cheapaml.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_calc_rhs.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_coare3_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_copy_edges.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_diagnostics_init.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_fields_load.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_fixed.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_init_varia.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_lanl_flux.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_read_pickup.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_readparms.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_seaice.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_timestep.F MITgcm-checkpoint68i/pkg/cheapaml/cheapaml_write_pickup.F MITgcm-checkpoint68i/pkg/chronos/ MITgcm-checkpoint68i/pkg/chronos/chronos.F MITgcm-checkpoint68i/pkg/chronos/chronos.h MITgcm-checkpoint68i/pkg/compon_communic/ MITgcm-checkpoint68i/pkg/compon_communic/CPLR_SIG.h MITgcm-checkpoint68i/pkg/compon_communic/comprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/comprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/compsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8.F MITgcm-checkpoint68i/pkg/compon_communic/couprecv_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_i4vec.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r4tiles.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8.F MITgcm-checkpoint68i/pkg/compon_communic/coupsend_r8tiles.F MITgcm-checkpoint68i/pkg/compon_communic/generate_tag.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcomponent_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_init.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcoupler_tile_register.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_all_check.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2dbl.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2int.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_char2real.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_dbl2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init1.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2a.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_init2b.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_initcomp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_int2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_match_comp.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_real2char.F MITgcm-checkpoint68i/pkg/compon_communic/mitcplr_sortranks.F MITgcm-checkpoint68i/pkg/cost/ MITgcm-checkpoint68i/pkg/cost/COST_OPTIONS.h MITgcm-checkpoint68i/pkg/cost/adcost.h MITgcm-checkpoint68i/pkg/cost/cost.h MITgcm-checkpoint68i/pkg/cost/cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/cost/cost_ad.flow MITgcm-checkpoint68i/pkg/cost/cost_ad_diff.list MITgcm-checkpoint68i/pkg/cost/cost_atlantic_heat.F MITgcm-checkpoint68i/pkg/cost/cost_check.F MITgcm-checkpoint68i/pkg/cost/cost_dependent_init.F MITgcm-checkpoint68i/pkg/cost/cost_depth.F MITgcm-checkpoint68i/pkg/cost/cost_final.F MITgcm-checkpoint68i/pkg/cost/cost_final_restore.F MITgcm-checkpoint68i/pkg/cost/cost_final_store.F MITgcm-checkpoint68i/pkg/cost/cost_init_varia.F MITgcm-checkpoint68i/pkg/cost/cost_readparms.F MITgcm-checkpoint68i/pkg/cost/cost_state_final.F MITgcm-checkpoint68i/pkg/cost/cost_test.F MITgcm-checkpoint68i/pkg/cost/cost_tile.F MITgcm-checkpoint68i/pkg/cost/cost_tracer.F MITgcm-checkpoint68i/pkg/cost/cost_vector.F MITgcm-checkpoint68i/pkg/cost/g_cost.h MITgcm-checkpoint68i/pkg/ctrl/ MITgcm-checkpoint68i/pkg/ctrl/CTRL_FIELDS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_GENARR.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OBCS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_OPTIONS.h MITgcm-checkpoint68i/pkg/ctrl/CTRL_SIZE.h MITgcm-checkpoint68i/pkg/ctrl/adctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_ad_diff.list MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound.flow MITgcm-checkpoint68i/pkg/ctrl/ctrl_bound_tl.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_check.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_driver.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_cost_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_depth_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_description.tex MITgcm-checkpoint68i/pkg/ctrl/ctrl_dummy.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_gen_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_get_mask.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcse.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsn.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcss.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getobcsw.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_getrec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_hfacc_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_ctrlvar.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_obcs_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_rec.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_variables.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_init_wet.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_local_params.h MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_forcing.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_ecco.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gen.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_genarr.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_map_ini_gentim2d.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_mask_set_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_pack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_readparms.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_fname.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_globfld_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_pack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xy.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xyz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_xz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_set_unpack_yz.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_smooth.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_summary.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_swapffields.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_toolbox.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_unpack.F MITgcm-checkpoint68i/pkg/ctrl/ctrl_weights.h MITgcm-checkpoint68i/pkg/ctrl/optim.h MITgcm-checkpoint68i/pkg/ctrl/optim_readparms.F MITgcm-checkpoint68i/pkg/debug/ MITgcm-checkpoint68i/pkg/debug/DEBUG_OPTIONS.h MITgcm-checkpoint68i/pkg/debug/chksum_tiled.F MITgcm-checkpoint68i/pkg/debug/debug_ad.flow MITgcm-checkpoint68i/pkg/debug/debug_call.F MITgcm-checkpoint68i/pkg/debug/debug_cs_corner_uv.F MITgcm-checkpoint68i/pkg/debug/debug_enter.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_fld_stats_rs.F MITgcm-checkpoint68i/pkg/debug/debug_leave.F MITgcm-checkpoint68i/pkg/debug/debug_msg.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rl.F MITgcm-checkpoint68i/pkg/debug/debug_stats_rs.F MITgcm-checkpoint68i/pkg/debug/fill_in_corners_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rl.F MITgcm-checkpoint68i/pkg/debug/write_fullarray_rs.F MITgcm-checkpoint68i/pkg/diagnostics/ MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_CALC.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGNOSTICS_SIZE.h MITgcm-checkpoint68i/pkg/diagnostics/DIAGSTATS_REGIONS.h MITgcm-checkpoint68i/pkg/diagnostics/DIAG_OPTIONS.h MITgcm-checkpoint68i/pkg/diagnostics/diag_calc_psivel.F MITgcm-checkpoint68i/pkg/diagnostics/diag_cg2d.F MITgcm-checkpoint68i/pkg/diagnostics/diag_vegtile_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad.flow MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ad_diff.list MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_addtolist.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_calc_phivel.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_field.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fill_state.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_fract_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_early.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_fixed.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_init_varia.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_p2p.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_interp_vert.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_is_on.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_list_check.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_main_init.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_read_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_readparms.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_scale_fill_rs.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_setdiag.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_status_error.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_sum_levels.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_summary.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_switch_onoff.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_utils.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_adj.F MITgcm-checkpoint68i/pkg/diagnostics/diagnostics_write_pickup.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ascii_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_clear.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_close_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_fill.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_global.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_ini_io.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_local.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_mnc_out.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_others_calc.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_output.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_pointers.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_set_regions.F MITgcm-checkpoint68i/pkg/diagnostics/diagstats_setdiag.F MITgcm-checkpoint68i/pkg/dic/ MITgcm-checkpoint68i/pkg/dic/DIC_ATMOS.h MITgcm-checkpoint68i/pkg/dic/DIC_COST.h MITgcm-checkpoint68i/pkg/dic/DIC_CTRL.h MITgcm-checkpoint68i/pkg/dic/DIC_LOAD.h MITgcm-checkpoint68i/pkg/dic/DIC_OPTIONS.h MITgcm-checkpoint68i/pkg/dic/DIC_VARS.h MITgcm-checkpoint68i/pkg/dic/alk_surfforcing.F MITgcm-checkpoint68i/pkg/dic/bio_export.F MITgcm-checkpoint68i/pkg/dic/calcite_saturation.F MITgcm-checkpoint68i/pkg/dic/car_flux.F MITgcm-checkpoint68i/pkg/dic/car_flux_omega_top.F MITgcm-checkpoint68i/pkg/dic/carbon_chem.F MITgcm-checkpoint68i/pkg/dic/dic_ad.flow MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/dic/dic_ad_diff.list MITgcm-checkpoint68i/pkg/dic/dic_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_diags.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_biotic_init.F MITgcm-checkpoint68i/pkg/dic/dic_cost.F MITgcm-checkpoint68i/pkg/dic/dic_diagnostics_init.F MITgcm-checkpoint68i/pkg/dic/dic_fields_load.F MITgcm-checkpoint68i/pkg/dic/dic_fields_update.F MITgcm-checkpoint68i/pkg/dic/dic_ini_atmos.F MITgcm-checkpoint68i/pkg/dic/dic_ini_forcing.F MITgcm-checkpoint68i/pkg/dic/dic_init_fixed.F MITgcm-checkpoint68i/pkg/dic/dic_init_varia.F MITgcm-checkpoint68i/pkg/dic/dic_mnc_init.F MITgcm-checkpoint68i/pkg/dic/dic_read_co2_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_read_pickup.F MITgcm-checkpoint68i/pkg/dic/dic_readparms.F MITgcm-checkpoint68i/pkg/dic/dic_set_control.F MITgcm-checkpoint68i/pkg/dic/dic_solvesaphe.F MITgcm-checkpoint68i/pkg/dic/dic_store_fluxco2.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing.F MITgcm-checkpoint68i/pkg/dic/dic_surfforcing_init.F MITgcm-checkpoint68i/pkg/dic/dic_tr_register.F MITgcm-checkpoint68i/pkg/dic/dic_write_pickup.F MITgcm-checkpoint68i/pkg/dic/fe_chem.F MITgcm-checkpoint68i/pkg/dic/insol.F MITgcm-checkpoint68i/pkg/dic/o2_surfforcing.F MITgcm-checkpoint68i/pkg/dic/phos_flux.F MITgcm-checkpoint68i/pkg/down_slope/ MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_OPTIONS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_PARAMS.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_SIZE.h MITgcm-checkpoint68i/pkg/down_slope/DWNSLP_VARS.h MITgcm-checkpoint68i/pkg/down_slope/dwnslp_ad_diff.list MITgcm-checkpoint68i/pkg/down_slope/dwnslp_apply.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_flow.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_calc_rho.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_diagnostics_init.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_fixed.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_init_varia.F MITgcm-checkpoint68i/pkg/down_slope/dwnslp_readparms.F MITgcm-checkpoint68i/pkg/ebm/ MITgcm-checkpoint68i/pkg/ebm/EBM.h MITgcm-checkpoint68i/pkg/ebm/EBM_OPTIONS.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ebm/ebm_ad_diff.list MITgcm-checkpoint68i/pkg/ebm/ebm_area_t.F MITgcm-checkpoint68i/pkg/ebm/ebm_atmosphere.F MITgcm-checkpoint68i/pkg/ebm/ebm_driver.F MITgcm-checkpoint68i/pkg/ebm/ebm_ini_vars.F MITgcm-checkpoint68i/pkg/ebm/ebm_load_climatology.F MITgcm-checkpoint68i/pkg/ebm/ebm_readparms.F MITgcm-checkpoint68i/pkg/ebm/ebm_wind_perturb.F MITgcm-checkpoint68i/pkg/ebm/ebm_zonalmean.F MITgcm-checkpoint68i/pkg/ecco/ MITgcm-checkpoint68i/pkg/ecco/ECCO.h MITgcm-checkpoint68i/pkg/ecco/ECCO_OPTIONS.h MITgcm-checkpoint68i/pkg/ecco/ECCO_SIZE.h MITgcm-checkpoint68i/pkg/ecco/cost_averagesfields.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesflags.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesgeneric.F MITgcm-checkpoint68i/pkg/ecco/cost_averagesinit.F MITgcm-checkpoint68i/pkg/ecco/cost_bp_read.F MITgcm-checkpoint68i/pkg/ecco/cost_forcing.F MITgcm-checkpoint68i/pkg/ecco/cost_gencal.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_all.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_assignperiod.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_boxmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_bpv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_customize.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_glbmean.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_moc.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_seaicev4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sshv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_sstv4.F MITgcm-checkpoint68i/pkg/ecco/cost_gencost_transp.F MITgcm-checkpoint68i/pkg/ecco/cost_generic.F MITgcm-checkpoint68i/pkg/ecco/cost_genread.F MITgcm-checkpoint68i/pkg/ecco/cost_hyd.F MITgcm-checkpoint68i/pkg/ecco/cost_internal_params.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs.F MITgcm-checkpoint68i/pkg/ecco/cost_obcs_ageos.F MITgcm-checkpoint68i/pkg/ecco/cost_obcse.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsn.F MITgcm-checkpoint68i/pkg/ecco/cost_obcss.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsvol.F MITgcm-checkpoint68i/pkg/ecco/cost_obcsw.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read.F MITgcm-checkpoint68i/pkg/ecco/cost_sla_read_yd.F MITgcm-checkpoint68i/pkg/ecco/cost_ssh.F MITgcm-checkpoint68i/pkg/ecco/ecco_ad.flow MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ecco/ecco_ad_diff.list MITgcm-checkpoint68i/pkg/ecco/ecco_check.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost.h MITgcm-checkpoint68i/pkg/ecco/ecco_cost_driver.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_final.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_barfiles.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_cost_weights.F MITgcm-checkpoint68i/pkg/ecco/ecco_diagnostics_init.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_fixed.F MITgcm-checkpoint68i/pkg/ecco/ecco_init_varia.F MITgcm-checkpoint68i/pkg/ecco/ecco_local_params.h MITgcm-checkpoint68i/pkg/ecco/ecco_phys.F MITgcm-checkpoint68i/pkg/ecco/ecco_readparms.F MITgcm-checkpoint68i/pkg/ecco/ecco_summary.F MITgcm-checkpoint68i/pkg/ecco/ecco_toolbox.F MITgcm-checkpoint68i/pkg/ecco/stergloh_output.F MITgcm-checkpoint68i/pkg/embed_files/ MITgcm-checkpoint68i/pkg/embed_files/EMBED_FILES_OPTIONS.h MITgcm-checkpoint68i/pkg/embed_files/README.txt MITgcm-checkpoint68i/pkg/embed_files/decode_files.c MITgcm-checkpoint68i/pkg/embed_files/embed_files_init.F MITgcm-checkpoint68i/pkg/exch2/ MITgcm-checkpoint68i/pkg/exch2/Makefile MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_BUFFER.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_PARAMS.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_SIZE.h MITgcm-checkpoint68i/pkg/exch2/W2_EXCH2_TOPOLOGY.h MITgcm-checkpoint68i/pkg/exch2/W2_OPTIONS.h MITgcm-checkpoint68i/pkg/exch2/exch2.flow MITgcm-checkpoint68i/pkg/exch2/exch2_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_diff.list MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_ad_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_check_depths.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_get_scal_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_get_uv_bounds.F MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_put_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_recv_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx1_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube.template MITgcm-checkpoint68i/pkg/exch2/exch2_rx2_cube_ad.template MITgcm-checkpoint68i/pkg/exch2/exch2_s3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx1.template MITgcm-checkpoint68i/pkg/exch2/exch2_send_rx2.template MITgcm-checkpoint68i/pkg/exch2/exch2_sm_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_agrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_bgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_cgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_uv_dgrid_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/exch2_z_3d_rx.template MITgcm-checkpoint68i/pkg/exch2/w2_cumulsum_z_tile.F MITgcm-checkpoint68i/pkg/exch2/w2_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_eeboot.F MITgcm-checkpoint68i/pkg/exch2/w2_map_procs.F MITgcm-checkpoint68i/pkg/exch2/w2_print_comm_sequence.F MITgcm-checkpoint68i/pkg/exch2/w2_print_e2setup.F MITgcm-checkpoint68i/pkg/exch2/w2_readparms.F MITgcm-checkpoint68i/pkg/exch2/w2_set_cs6_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_f2f_index.F MITgcm-checkpoint68i/pkg/exch2/w2_set_gen_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_cumsum.F MITgcm-checkpoint68i/pkg/exch2/w2_set_map_tiles.F MITgcm-checkpoint68i/pkg/exch2/w2_set_myown_facets.F MITgcm-checkpoint68i/pkg/exch2/w2_set_single_facet.F MITgcm-checkpoint68i/pkg/exch2/w2_set_tile2tiles.F MITgcm-checkpoint68i/pkg/exf/ MITgcm-checkpoint68i/pkg/exf/EXF_CONSTANTS.h MITgcm-checkpoint68i/pkg/exf/EXF_FIELDS.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_PARAM.h MITgcm-checkpoint68i/pkg/exf/EXF_INTERP_SIZE.h MITgcm-checkpoint68i/pkg/exf/EXF_OPTIONS.h MITgcm-checkpoint68i/pkg/exf/EXF_PARAM.h MITgcm-checkpoint68i/pkg/exf/TODO.txt MITgcm-checkpoint68i/pkg/exf/exf_ad.flow MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/exf/exf_ad_diff.list MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots__g.F MITgcm-checkpoint68i/pkg/exf/exf_adjoint_snapshots_ad.F MITgcm-checkpoint68i/pkg/exf/exf_bulkformulae.F MITgcm-checkpoint68i/pkg/exf/exf_check.F MITgcm-checkpoint68i/pkg/exf/exf_check_range.F MITgcm-checkpoint68i/pkg/exf/exf_description.tex MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_fill.F MITgcm-checkpoint68i/pkg/exf/exf_diagnostics_init.F MITgcm-checkpoint68i/pkg/exf/exf_filter_rl.F MITgcm-checkpoint68i/pkg/exf/exf_getclim.F MITgcm-checkpoint68i/pkg/exf/exf_getffield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getffieldrec.F MITgcm-checkpoint68i/pkg/exf/exf_getffields.F MITgcm-checkpoint68i/pkg/exf/exf_getfield_start.F MITgcm-checkpoint68i/pkg/exf/exf_getforcing.F MITgcm-checkpoint68i/pkg/exf/exf_getmonthsrec.F MITgcm-checkpoint68i/pkg/exf/exf_getsurfacefluxes.F MITgcm-checkpoint68i/pkg/exf/exf_getyearlyfieldname.F MITgcm-checkpoint68i/pkg/exf/exf_init_fixed.F MITgcm-checkpoint68i/pkg/exf/exf_init_fld.F MITgcm-checkpoint68i/pkg/exf/exf_init_interp.F MITgcm-checkpoint68i/pkg/exf/exf_init_varia.F MITgcm-checkpoint68i/pkg/exf/exf_interp.F MITgcm-checkpoint68i/pkg/exf/exf_interp_read.F MITgcm-checkpoint68i/pkg/exf/exf_interp_uv.F MITgcm-checkpoint68i/pkg/exf/exf_interpolate.F MITgcm-checkpoint68i/pkg/exf/exf_mapfields.F MITgcm-checkpoint68i/pkg/exf/exf_monitor.F MITgcm-checkpoint68i/pkg/exf/exf_monitor_ad.F MITgcm-checkpoint68i/pkg/exf/exf_radiation.F MITgcm-checkpoint68i/pkg/exf/exf_readparms.F MITgcm-checkpoint68i/pkg/exf/exf_set_fld.F MITgcm-checkpoint68i/pkg/exf/exf_set_gen.F MITgcm-checkpoint68i/pkg/exf/exf_set_obcs.F MITgcm-checkpoint68i/pkg/exf/exf_set_uv.F MITgcm-checkpoint68i/pkg/exf/exf_summary.F MITgcm-checkpoint68i/pkg/exf/exf_swapffields.F MITgcm-checkpoint68i/pkg/exf/exf_weight_sfx_diags.F MITgcm-checkpoint68i/pkg/exf/exf_wind.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle.F MITgcm-checkpoint68i/pkg/exf/exf_zenithangle_table.F MITgcm-checkpoint68i/pkg/fizhi/ MITgcm-checkpoint68i/pkg/fizhi/AtoC.F MITgcm-checkpoint68i/pkg/fizhi/CtoA.F MITgcm-checkpoint68i/pkg/fizhi/FIZHI_OPTIONS.h MITgcm-checkpoint68i/pkg/fizhi/cah-dat.h MITgcm-checkpoint68i/pkg/fizhi/cai-dat.h MITgcm-checkpoint68i/pkg/fizhi/chronos.h MITgcm-checkpoint68i/pkg/fizhi/co2-tran3.h MITgcm-checkpoint68i/pkg/fizhi/do_fizhi.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_SHP.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_alarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_chemistry_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_clockstuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagalarms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_diagnostics_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_driver.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_earth_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_fillnegs.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_gwdrag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_chem.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_fixed.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vars.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_veg.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_init_vegsurftiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_io_comms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_SIZE.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_land_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_lsm.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_lwrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mnc_init.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_moist.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_mpistuff.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_ocean_coms.h MITgcm-checkpoint68i/pkg/fizhi/fizhi_rayleigh.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_read_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readparms.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_readwrite_vegtiles.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_step_diag.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_swrad.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_tendency_apply.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_turb.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_update_time.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_utils.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_wrapper.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_datetime.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_pickup.F MITgcm-checkpoint68i/pkg/fizhi/fizhi_write_state.F MITgcm-checkpoint68i/pkg/fizhi/getcon.F MITgcm-checkpoint68i/pkg/fizhi/getpwhere.F MITgcm-checkpoint68i/pkg/fizhi/h2o-tran3.h MITgcm-checkpoint68i/pkg/fizhi/o3-tran3.h MITgcm-checkpoint68i/pkg/fizhi/sibber.h MITgcm-checkpoint68i/pkg/fizhi/slprs.F MITgcm-checkpoint68i/pkg/fizhi/snwmid.h MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_corr.F MITgcm-checkpoint68i/pkg/fizhi/step_fizhi_fg.F MITgcm-checkpoint68i/pkg/fizhi/step_physics.F MITgcm-checkpoint68i/pkg/fizhi/update_chemistry_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_earth_exports.F MITgcm-checkpoint68i/pkg/fizhi/update_ocean_exports.F MITgcm-checkpoint68i/pkg/flt/ MITgcm-checkpoint68i/pkg/flt/FLT.h MITgcm-checkpoint68i/pkg/flt/FLT_BUFF.h MITgcm-checkpoint68i/pkg/flt/FLT_OPTIONS.h MITgcm-checkpoint68i/pkg/flt/FLT_SIZE.h MITgcm-checkpoint68i/pkg/flt/README.flt MITgcm-checkpoint68i/pkg/flt/exch2_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch2_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/exch_recv_get_vec.F MITgcm-checkpoint68i/pkg/flt/exch_send_put_vec.F MITgcm-checkpoint68i/pkg/flt/flt_down.F MITgcm-checkpoint68i/pkg/flt/flt_exch2.F MITgcm-checkpoint68i/pkg/flt/flt_exchg.F MITgcm-checkpoint68i/pkg/flt/flt_init_fixed.F MITgcm-checkpoint68i/pkg/flt/flt_init_varia.F MITgcm-checkpoint68i/pkg/flt/flt_interp_linear.F MITgcm-checkpoint68i/pkg/flt/flt_main.F MITgcm-checkpoint68i/pkg/flt/flt_mapping.F MITgcm-checkpoint68i/pkg/flt/flt_readparms.F MITgcm-checkpoint68i/pkg/flt/flt_runga2.F MITgcm-checkpoint68i/pkg/flt/flt_runga4.F MITgcm-checkpoint68i/pkg/flt/flt_traj.F MITgcm-checkpoint68i/pkg/flt/flt_up.F MITgcm-checkpoint68i/pkg/flt/flt_write_pickup.F MITgcm-checkpoint68i/pkg/frazil/ MITgcm-checkpoint68i/pkg/frazil/FRAZIL.h MITgcm-checkpoint68i/pkg/frazil/FRAZIL_OPTIONS.h MITgcm-checkpoint68i/pkg/frazil/frazil_ad.flow MITgcm-checkpoint68i/pkg/frazil/frazil_ad_diff.list MITgcm-checkpoint68i/pkg/frazil/frazil_calc_rhs.F MITgcm-checkpoint68i/pkg/frazil/frazil_description.tex MITgcm-checkpoint68i/pkg/frazil/frazil_diagnostics_init.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_fixed.F MITgcm-checkpoint68i/pkg/frazil/frazil_init_varia.F MITgcm-checkpoint68i/pkg/frazil/frazil_tendency_apply.F MITgcm-checkpoint68i/pkg/gchem/ MITgcm-checkpoint68i/pkg/gchem/GCHEM.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_FIELDS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_OPTIONS.h MITgcm-checkpoint68i/pkg/gchem/GCHEM_SIZE.h MITgcm-checkpoint68i/pkg/gchem/gchem_ad_diff.list MITgcm-checkpoint68i/pkg/gchem/gchem_add_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_calc_tendency.F MITgcm-checkpoint68i/pkg/gchem/gchem_check.F MITgcm-checkpoint68i/pkg/gchem/gchem_diagnostics_init.F MITgcm-checkpoint68i/pkg/gchem/gchem_fields_load.F MITgcm-checkpoint68i/pkg/gchem/gchem_forcing_sep.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_fixed.F MITgcm-checkpoint68i/pkg/gchem/gchem_init_vari.F MITgcm-checkpoint68i/pkg/gchem/gchem_output.F MITgcm-checkpoint68i/pkg/gchem/gchem_readparms.F MITgcm-checkpoint68i/pkg/gchem/gchem_surfmean.F MITgcm-checkpoint68i/pkg/gchem/gchem_tr_register.F MITgcm-checkpoint68i/pkg/gchem/gchem_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/ MITgcm-checkpoint68i/pkg/generic_advdiff/GAD.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_FLUX_LIMITER.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_OPTIONS.h MITgcm-checkpoint68i/pkg/generic_advdiff/GAD_SOM_VARS.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ad_diff.list MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advection.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_advscheme.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_biharm_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c2_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_c4_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_calc_rhs.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_check.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_del2.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_init.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diagnostics_state.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_diff_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst2u1_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_dst3fl_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_exch_som.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_fluxlimit_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_grad_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_implicit_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_fixed.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_init_varia.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_os7mp_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_osc_mul_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_plm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_ppm_p3e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_flx_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_fun.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_hat_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_pqm_p5e_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_read_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_advect.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_exchanges.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_fill_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_lim_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_som_prep_cs_corner.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_x.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3_adv_y.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_u3c4_impl_r.F MITgcm-checkpoint68i/pkg/generic_advdiff/gad_write_pickup.F MITgcm-checkpoint68i/pkg/generic_advdiff/generic_advdiff.tex MITgcm-checkpoint68i/pkg/generic_advdiff/salt_fill.F MITgcm-checkpoint68i/pkg/ggl90/ MITgcm-checkpoint68i/pkg/ggl90/GGL90.h MITgcm-checkpoint68i/pkg/ggl90/GGL90_OPTIONS.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ggl90/ggl90_ad_diff.list MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_diff.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_calc_visc.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_check.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_diagnostics_init.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_exchanges.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_idemix.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_fixed.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_init_varia.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_output.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_read_pickup.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_readparms.F MITgcm-checkpoint68i/pkg/ggl90/ggl90_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/ MITgcm-checkpoint68i/pkg/gmredi/GMREDI.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_OPTIONS.h MITgcm-checkpoint68i/pkg/gmredi/GMREDI_TAVE.h MITgcm-checkpoint68i/pkg/gmredi/README_ADJOINT MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad.flow MITgcm-checkpoint68i/pkg/gmredi/gmredi_ad_diff.list MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_bates_k.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_diff.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_eigs.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_b.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_psi_bvp.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_qgleith.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_tensor.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_calc_urms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_check.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_description.tex MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_fill.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_impl.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_diagnostics_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_do_exch.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_fixed.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_init_varia.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_mnc_init.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_output.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_read_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_readparms.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_residual_flow.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_rtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_limit.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_slope_psi.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_write_pickup.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_xtransport.F MITgcm-checkpoint68i/pkg/gmredi/gmredi_ytransport.F MITgcm-checkpoint68i/pkg/gmredi/submeso_calc_psi.F MITgcm-checkpoint68i/pkg/grdchk/ MITgcm-checkpoint68i/pkg/grdchk/GRDCHK_OPTIONS.h MITgcm-checkpoint68i/pkg/grdchk/grdchk.h MITgcm-checkpoint68i/pkg/grdchk/grdchk_check.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_description.tex MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_obcs_mask.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_get_position.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getadxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_getxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_init.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_loc.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_main.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_print.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_readparms.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_setxx.F MITgcm-checkpoint68i/pkg/grdchk/grdchk_summary.F MITgcm-checkpoint68i/pkg/gridalt/ MITgcm-checkpoint68i/pkg/gridalt/GRIDALT_OPTIONS.h MITgcm-checkpoint68i/pkg/gridalt/dyn2phys.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_diagnostics_init.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_initialise.F MITgcm-checkpoint68i/pkg/gridalt/gridalt_mapping.h MITgcm-checkpoint68i/pkg/gridalt/gridalt_update.F MITgcm-checkpoint68i/pkg/gridalt/make_phys_grid.F MITgcm-checkpoint68i/pkg/gridalt/phys2dyn.F MITgcm-checkpoint68i/pkg/icefront/ MITgcm-checkpoint68i/pkg/icefront/ICEFRONT.h MITgcm-checkpoint68i/pkg/icefront/ICEFRONT_OPTIONS.h MITgcm-checkpoint68i/pkg/icefront/ICFSymbol.txt MITgcm-checkpoint68i/pkg/icefront/icefront_check.F MITgcm-checkpoint68i/pkg/icefront/icefront_description.tex MITgcm-checkpoint68i/pkg/icefront/icefront_diagnostics_init.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_fixed.F MITgcm-checkpoint68i/pkg/icefront/icefront_init_varia.F MITgcm-checkpoint68i/pkg/icefront/icefront_readparms.F MITgcm-checkpoint68i/pkg/icefront/icefront_tendency_apply.F MITgcm-checkpoint68i/pkg/icefront/icefront_thermodynamics.F MITgcm-checkpoint68i/pkg/kl10/ MITgcm-checkpoint68i/pkg/kl10/KL10.h MITgcm-checkpoint68i/pkg/kl10/KL10_DIAGS.h MITgcm-checkpoint68i/pkg/kl10/KL10_OPTIONS.h MITgcm-checkpoint68i/pkg/kl10/KL10_TAVE.h MITgcm-checkpoint68i/pkg/kl10/kl10_calc.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_diff.F MITgcm-checkpoint68i/pkg/kl10/kl10_calc_visc.F MITgcm-checkpoint68i/pkg/kl10/kl10_check.F MITgcm-checkpoint68i/pkg/kl10/kl10_diagnostics_init.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_fixed.F MITgcm-checkpoint68i/pkg/kl10/kl10_init_varia.F MITgcm-checkpoint68i/pkg/kl10/kl10_output.F MITgcm-checkpoint68i/pkg/kl10/kl10_readparms.F MITgcm-checkpoint68i/pkg/kpp/ MITgcm-checkpoint68i/pkg/kpp/KPP.h MITgcm-checkpoint68i/pkg/kpp/KPP_OPTIONS.h MITgcm-checkpoint68i/pkg/kpp/KPP_PARAMS.h MITgcm-checkpoint68i/pkg/kpp/KPP_TAVE.h MITgcm-checkpoint68i/pkg/kpp/kpp_ad_diff.list MITgcm-checkpoint68i/pkg/kpp/kpp_calc.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_diff_t.F MITgcm-checkpoint68i/pkg/kpp/kpp_calc_visc.F MITgcm-checkpoint68i/pkg/kpp/kpp_check.F MITgcm-checkpoint68i/pkg/kpp/kpp_description.tex MITgcm-checkpoint68i/pkg/kpp/kpp_diagnostics_init.F MITgcm-checkpoint68i/pkg/kpp/kpp_do_exch.F MITgcm-checkpoint68i/pkg/kpp/kpp_forcing_surf.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_fixed.F MITgcm-checkpoint68i/pkg/kpp/kpp_init_varia.F MITgcm-checkpoint68i/pkg/kpp/kpp_output.F MITgcm-checkpoint68i/pkg/kpp/kpp_readparms.F MITgcm-checkpoint68i/pkg/kpp/kpp_routines.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_ptr.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_s.F MITgcm-checkpoint68i/pkg/kpp/kpp_transport_t.F MITgcm-checkpoint68i/pkg/land/ MITgcm-checkpoint68i/pkg/land/LAND_OPTIONS.h MITgcm-checkpoint68i/pkg/land/LAND_PARAMS.h MITgcm-checkpoint68i/pkg/land/LAND_SIZE.h MITgcm-checkpoint68i/pkg/land/LAND_TAVE.h MITgcm-checkpoint68i/pkg/land/LAND_VARS.h MITgcm-checkpoint68i/pkg/land/land_albedo.F MITgcm-checkpoint68i/pkg/land/land_check.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_init.F MITgcm-checkpoint68i/pkg/land/land_diagnostics_state.F MITgcm-checkpoint68i/pkg/land/land_do_diags.F MITgcm-checkpoint68i/pkg/land/land_impl_temp.F MITgcm-checkpoint68i/pkg/land/land_ini_vars.F MITgcm-checkpoint68i/pkg/land/land_init_fixed.F MITgcm-checkpoint68i/pkg/land/land_mnc_init.F MITgcm-checkpoint68i/pkg/land/land_monitor.F MITgcm-checkpoint68i/pkg/land/land_output.F MITgcm-checkpoint68i/pkg/land/land_read_pickup.F MITgcm-checkpoint68i/pkg/land/land_readparms.F MITgcm-checkpoint68i/pkg/land/land_stepfwd.F MITgcm-checkpoint68i/pkg/land/land_write_pickup.F MITgcm-checkpoint68i/pkg/layers/ MITgcm-checkpoint68i/pkg/layers/LAYERS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_OPTIONS.h MITgcm-checkpoint68i/pkg/layers/LAYERS_SIZE.h MITgcm-checkpoint68i/pkg/layers/layers_ad_diff.list MITgcm-checkpoint68i/pkg/layers/layers_calc.F MITgcm-checkpoint68i/pkg/layers/layers_check.F MITgcm-checkpoint68i/pkg/layers/layers_diagnostics_init.F MITgcm-checkpoint68i/pkg/layers/layers_fluxcalc.F MITgcm-checkpoint68i/pkg/layers/layers_init_fixed.F MITgcm-checkpoint68i/pkg/layers/layers_init_varia.F MITgcm-checkpoint68i/pkg/layers/layers_mnc_init.F MITgcm-checkpoint68i/pkg/layers/layers_output.F MITgcm-checkpoint68i/pkg/layers/layers_readparms.F MITgcm-checkpoint68i/pkg/layers/layers_save.F MITgcm-checkpoint68i/pkg/layers/layers_thermodynamics.F MITgcm-checkpoint68i/pkg/layers/layers_wsurf_tr.F MITgcm-checkpoint68i/pkg/longstep/ MITgcm-checkpoint68i/pkg/longstep/LONGSTEP.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_OPTIONS.h MITgcm-checkpoint68i/pkg/longstep/LONGSTEP_PARAMS.h MITgcm-checkpoint68i/pkg/longstep/README MITgcm-checkpoint68i/pkg/longstep/longstep_average.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_average_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_check_iters.F MITgcm-checkpoint68i/pkg/longstep/longstep_correction_step.F MITgcm-checkpoint68i/pkg/longstep/longstep_diagnostics_init.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_fac.F MITgcm-checkpoint68i/pkg/longstep/longstep_fill_3d_rs.F MITgcm-checkpoint68i/pkg/longstep/longstep_forcing_surf.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_fixed.F MITgcm-checkpoint68i/pkg/longstep/longstep_init_varia.F MITgcm-checkpoint68i/pkg/longstep/longstep_readparms.F MITgcm-checkpoint68i/pkg/longstep/longstep_reset_3d.F MITgcm-checkpoint68i/pkg/longstep/longstep_thermodynamics.F MITgcm-checkpoint68i/pkg/matrix/ MITgcm-checkpoint68i/pkg/matrix/MATRIX.h MITgcm-checkpoint68i/pkg/matrix/MATRIX_OPTIONS.h MITgcm-checkpoint68i/pkg/matrix/matrix_init_varia.F MITgcm-checkpoint68i/pkg/matrix/matrix_output.F MITgcm-checkpoint68i/pkg/matrix/matrix_readparms.F MITgcm-checkpoint68i/pkg/matrix/matrix_store_tendency.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_grid.F MITgcm-checkpoint68i/pkg/matrix/matrix_write_tendency.F MITgcm-checkpoint68i/pkg/mdsio/ MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_3D.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_BUFF_WH.h MITgcm-checkpoint68i/pkg/mdsio/MDSIO_OPTIONS.h MITgcm-checkpoint68i/pkg/mdsio/mdsio_ad.flow MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertorl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_buffertors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_check4file.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_facef_read.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_gl_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_pass_r8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rd_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_read_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_readvec_loc.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_rw_slice.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg4tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8torl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_seg8tors.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_segxtorx_2d.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_metafiles.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rl.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_wr_rec_rs.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_field.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_meta.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_section.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_tape.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_write_whalos.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writelocal.F MITgcm-checkpoint68i/pkg/mdsio/mdsio_writevec_loc.F MITgcm-checkpoint68i/pkg/mnc/ MITgcm-checkpoint68i/pkg/mnc/CPP_OPTIONS.t MITgcm-checkpoint68i/pkg/mnc/MNC_BUFF.h MITgcm-checkpoint68i/pkg/mnc/MNC_COMMON.h MITgcm-checkpoint68i/pkg/mnc/MNC_OPTIONS.h MITgcm-checkpoint68i/pkg/mnc/MNC_PARAMS.h MITgcm-checkpoint68i/pkg/mnc/MNC_SIZE.h MITgcm-checkpoint68i/pkg/mnc/Makefile MITgcm-checkpoint68i/pkg/mnc/PACKAGES_CONFIG.t MITgcm-checkpoint68i/pkg/mnc/README.txt MITgcm-checkpoint68i/pkg/mnc/SIZE.t MITgcm-checkpoint68i/pkg/mnc/TESTING_README.txt MITgcm-checkpoint68i/pkg/mnc/build_netcdf_stubs MITgcm-checkpoint68i/pkg/mnc/mnc_ad.flow MITgcm-checkpoint68i/pkg/mnc/mnc_create_dir.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_citer.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_cvars.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_fsize.c MITgcm-checkpoint68i/pkg/mnc/mnc_cw_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_missingvals.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_model_attr.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_readwrite.template MITgcm-checkpoint68i/pkg/mnc/mnc_cw_udim.F MITgcm-checkpoint68i/pkg/mnc/mnc_cw_write_grid_info.F MITgcm-checkpoint68i/pkg/mnc/mnc_cwrapper.F MITgcm-checkpoint68i/pkg/mnc/mnc_description.tex MITgcm-checkpoint68i/pkg/mnc/mnc_dim.F MITgcm-checkpoint68i/pkg/mnc/mnc_dump.F MITgcm-checkpoint68i/pkg/mnc/mnc_file.F MITgcm-checkpoint68i/pkg/mnc/mnc_grid.F MITgcm-checkpoint68i/pkg/mnc/mnc_init.F MITgcm-checkpoint68i/pkg/mnc/mnc_readparms.F MITgcm-checkpoint68i/pkg/mnc/mnc_test_001.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_002.T MITgcm-checkpoint68i/pkg/mnc/mnc_test_utils.T MITgcm-checkpoint68i/pkg/mnc/mnc_update_time.F MITgcm-checkpoint68i/pkg/mnc/mnc_utils.F MITgcm-checkpoint68i/pkg/mnc/mnc_var.F MITgcm-checkpoint68i/pkg/mnc/parse_local_info MITgcm-checkpoint68i/pkg/mnc/pre-defined_grids.txt MITgcm-checkpoint68i/pkg/mom_common/ MITgcm-checkpoint68i/pkg/mom_common/MOM_COMMON_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_common/MOM_VISC.h MITgcm-checkpoint68i/pkg/mom_common/mom_calc_3d_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_absvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hdiv.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_hfacz.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_ke.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_relvort3.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_strain.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_tension.F MITgcm-checkpoint68i/pkg/mom_common/mom_calc_visc.F MITgcm-checkpoint68i/pkg/mom_common/mom_common_ad_diff.list MITgcm-checkpoint68i/pkg/mom_common/mom_diagnostics_init.F MITgcm-checkpoint68i/pkg/mom_common/mom_hdissip.F MITgcm-checkpoint68i/pkg/mom_common/mom_init_fixed.F MITgcm-checkpoint68i/pkg/mom_common/mom_quasihydrostatic.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_u_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_uv_smag_3d.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_botdrag_coeff.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_implicit_r.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_rviscflux.F MITgcm-checkpoint68i/pkg/mom_common/mom_v_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_limit.F MITgcm-checkpoint68i/pkg/mom_common/mom_visc_qgl_stretch.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_coriolis_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_metric_nh.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_sidedrag.F MITgcm-checkpoint68i/pkg/mom_common/mom_w_smag_3d.F MITgcm-checkpoint68i/pkg/mom_fluxform/ MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM.h MITgcm-checkpoint68i/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_fluxform/mom_calc_rtrans.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_fluxform_ad_diff.list MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_uu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_vu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_adv_wu.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_del2u.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_u_yviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_uv_boundary.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_uv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_vv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_adv_wv.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_del2v.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_cylinder.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_metric_sphere.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_xviscflux.F MITgcm-checkpoint68i/pkg/mom_fluxform/mom_v_yviscflux.F MITgcm-checkpoint68i/pkg/mom_vecinv/ MITgcm-checkpoint68i/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vecinv_ad_diff.list MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_del2uv.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_hdissip.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_u_vertshear.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_grad_ke.F MITgcm-checkpoint68i/pkg/mom_vecinv/mom_vi_v_vertshear.F MITgcm-checkpoint68i/pkg/monitor/ MITgcm-checkpoint68i/pkg/monitor/MONITOR.h MITgcm-checkpoint68i/pkg/monitor/MONITOR_OPTIONS.h MITgcm-checkpoint68i/pkg/monitor/mon_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw.F MITgcm-checkpoint68i/pkg/monitor/mon_advcflw2.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_advcfl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_calc_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_description.tex MITgcm-checkpoint68i/pkg/monitor/mon_init.F MITgcm-checkpoint68i/pkg/monitor/mon_ke.F MITgcm-checkpoint68i/pkg/monitor/mon_out.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_printstats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_set_iounit.F MITgcm-checkpoint68i/pkg/monitor/mon_set_pref.F MITgcm-checkpoint68i/pkg/monitor/mon_solution.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_latbnd_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_stats_rs.F MITgcm-checkpoint68i/pkg/monitor/mon_surfcor.F MITgcm-checkpoint68i/pkg/monitor/mon_vort3.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rl.F MITgcm-checkpoint68i/pkg/monitor/mon_writestats_rs.F MITgcm-checkpoint68i/pkg/monitor/monitor.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.F MITgcm-checkpoint68i/pkg/monitor/monitor_ad.flow MITgcm-checkpoint68i/pkg/monitor/monitor_description.tex MITgcm-checkpoint68i/pkg/monitor/monitor_g.F MITgcm-checkpoint68i/pkg/my82/ MITgcm-checkpoint68i/pkg/my82/MY82.h MITgcm-checkpoint68i/pkg/my82/MY82_OPTIONS.h MITgcm-checkpoint68i/pkg/my82/my82_calc.F MITgcm-checkpoint68i/pkg/my82/my82_calc_diff.F MITgcm-checkpoint68i/pkg/my82/my82_calc_visc.F MITgcm-checkpoint68i/pkg/my82/my82_check.F MITgcm-checkpoint68i/pkg/my82/my82_diagnostics_init.F MITgcm-checkpoint68i/pkg/my82/my82_init_fixed.F MITgcm-checkpoint68i/pkg/my82/my82_init_varia.F MITgcm-checkpoint68i/pkg/my82/my82_output.F MITgcm-checkpoint68i/pkg/my82/my82_readparms.F MITgcm-checkpoint68i/pkg/my82/my82_ri_number.F MITgcm-checkpoint68i/pkg/mypackage/ MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE.h MITgcm-checkpoint68i/pkg/mypackage/MYPACKAGE_OPTIONS.h MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad.flow MITgcm-checkpoint68i/pkg/mypackage/mypackage_ad_diff.list MITgcm-checkpoint68i/pkg/mypackage/mypackage_calc_rhs.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_check.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_description.tex MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_diagnostics_state.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_fixed.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_init_varia.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_mnc_init.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_read_pickup.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_readparms.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_tendency_apply.F MITgcm-checkpoint68i/pkg/mypackage/mypackage_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/ MITgcm-checkpoint68i/pkg/obcs/OBCS_FIELDS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_GRID.h MITgcm-checkpoint68i/pkg/obcs/OBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PARAMS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_PTRACERS.h MITgcm-checkpoint68i/pkg/obcs/OBCS_SEAICE.h MITgcm-checkpoint68i/pkg/obcs/ORLANSKI.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad.flow MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/obcs/obcs_ad_diff.list MITgcm-checkpoint68i/pkg/obcs/obcs_add_tides.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust.F MITgcm-checkpoint68i/pkg/obcs/obcs_adjust_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_eta.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ptracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_r_star.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_seaice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_surf_dr.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_ts.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uv.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_uvice.F MITgcm-checkpoint68i/pkg/obcs/obcs_apply_w.F MITgcm-checkpoint68i/pkg/obcs/obcs_balance_flow.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc.F MITgcm-checkpoint68i/pkg/obcs/obcs_calc_stevens.F MITgcm-checkpoint68i/pkg/obcs/obcs_check.F MITgcm-checkpoint68i/pkg/obcs/obcs_check_depths.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_copy_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_description.tex MITgcm-checkpoint68i/pkg/obcs/obcs_diag_balance.F MITgcm-checkpoint68i/pkg/obcs/obcs_exchanges.F MITgcm-checkpoint68i/pkg/obcs/obcs_exf_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_fields_load.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_fixed.F MITgcm-checkpoint68i/pkg/obcs/obcs_init_variables.F MITgcm-checkpoint68i/pkg/obcs/obcs_mon_stats.F MITgcm-checkpoint68i/pkg/obcs/obcs_monitor.F MITgcm-checkpoint68i/pkg/obcs/obcs_output.F MITgcm-checkpoint68i/pkg/obcs/obcs_prescribe_read.F MITgcm-checkpoint68i/pkg/obcs/obcs_read_pickup.F MITgcm-checkpoint68i/pkg/obcs/obcs_readparms.F MITgcm-checkpoint68i/pkg/obcs/obcs_save_uv_n.F MITgcm-checkpoint68i/pkg/obcs/obcs_seaice_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_set_connect.F MITgcm-checkpoint68i/pkg/obcs/obcs_sponge.F MITgcm-checkpoint68i/pkg/obcs/obcs_u1_adv_tracer.F MITgcm-checkpoint68i/pkg/obcs/obcs_write_pickup.F MITgcm-checkpoint68i/pkg/obcs/orlanski_east.F MITgcm-checkpoint68i/pkg/obcs/orlanski_init.F MITgcm-checkpoint68i/pkg/obcs/orlanski_north.F MITgcm-checkpoint68i/pkg/obcs/orlanski_south.F MITgcm-checkpoint68i/pkg/obcs/orlanski_west.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_PARAMS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/CPL_TAVE.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCNCPL.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/OCN_CPL_OPTIONS.h MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_fill.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_diagnostics_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_exch_configs.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_export_import_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_import_cplparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_ini_vars.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_init_fixed.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_output.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_readparms.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_register.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/cpl_write_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_apply_import.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_check_cplconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_diags.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_cpl_read_pickup.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_data.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_export_ocnconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_atmconfig.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_import_fields.F MITgcm-checkpoint68i/pkg/ocn_compon_interf/ocn_store_my_data.F MITgcm-checkpoint68i/pkg/offline/ MITgcm-checkpoint68i/pkg/offline/OFFLINE.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_OPTIONS.h MITgcm-checkpoint68i/pkg/offline/OFFLINE_SWITCH.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/offline/offline_ad_diff.list MITgcm-checkpoint68i/pkg/offline/offline_check.F MITgcm-checkpoint68i/pkg/offline/offline_fields_load.F MITgcm-checkpoint68i/pkg/offline/offline_get_diffus.F MITgcm-checkpoint68i/pkg/offline/offline_init_varia.F MITgcm-checkpoint68i/pkg/offline/offline_readparms.F MITgcm-checkpoint68i/pkg/offline/offline_reset_parms.F MITgcm-checkpoint68i/pkg/openad/ MITgcm-checkpoint68i/pkg/openad/OPENAD_OPTIONS.h MITgcm-checkpoint68i/pkg/openad/ad_s_different_multiple.F MITgcm-checkpoint68i/pkg/openad/ad_s_ifnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_ilnblnk.F MITgcm-checkpoint68i/pkg/openad/ad_s_mds_reclen.F MITgcm-checkpoint68i/pkg/openad/externalDummies.F MITgcm-checkpoint68i/pkg/openad/findAndDiff.bash MITgcm-checkpoint68i/pkg/openad/inner_do_loop.F MITgcm-checkpoint68i/pkg/openad/openad_ad_diff.list MITgcm-checkpoint68i/pkg/openad/openad_checkpointInit.F MITgcm-checkpoint68i/pkg/openad/openad_dumpAdjoint.F MITgcm-checkpoint68i/pkg/openad/seawater.F MITgcm-checkpoint68i/pkg/openad/the_model_main.F MITgcm-checkpoint68i/pkg/opps/ MITgcm-checkpoint68i/pkg/opps/OPPS.h MITgcm-checkpoint68i/pkg/opps/OPPS_OPTIONS.h MITgcm-checkpoint68i/pkg/opps/opps_calc.F MITgcm-checkpoint68i/pkg/opps/opps_check.F MITgcm-checkpoint68i/pkg/opps/opps_init.F MITgcm-checkpoint68i/pkg/opps/opps_interface.F MITgcm-checkpoint68i/pkg/opps/opps_readparms.F MITgcm-checkpoint68i/pkg/pkg_depend MITgcm-checkpoint68i/pkg/pkg_groups MITgcm-checkpoint68i/pkg/pp81/ MITgcm-checkpoint68i/pkg/pp81/PP81.h MITgcm-checkpoint68i/pkg/pp81/PP81_OPTIONS.h MITgcm-checkpoint68i/pkg/pp81/pp81_calc.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_diff.F MITgcm-checkpoint68i/pkg/pp81/pp81_calc_visc.F MITgcm-checkpoint68i/pkg/pp81/pp81_check.F MITgcm-checkpoint68i/pkg/pp81/pp81_diagnostics_init.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_fixed.F MITgcm-checkpoint68i/pkg/pp81/pp81_init_varia.F MITgcm-checkpoint68i/pkg/pp81/pp81_output.F MITgcm-checkpoint68i/pkg/pp81/pp81_readparms.F MITgcm-checkpoint68i/pkg/pp81/pp81_ri_number.F MITgcm-checkpoint68i/pkg/profiles/ MITgcm-checkpoint68i/pkg/profiles/PROFILES_OPTIONS.h MITgcm-checkpoint68i/pkg/profiles/PROFILES_SIZE.h MITgcm-checkpoint68i/pkg/profiles/active_file_control_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles.flow MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_ad.F MITgcm-checkpoint68i/pkg/profiles/active_file_profiles_g.F MITgcm-checkpoint68i/pkg/profiles/cost_profiles.F MITgcm-checkpoint68i/pkg/profiles/profiles.flow MITgcm-checkpoint68i/pkg/profiles/profiles.h MITgcm-checkpoint68i/pkg/profiles/profiles_ad_diff.list MITgcm-checkpoint68i/pkg/profiles/profiles_findunit.F MITgcm-checkpoint68i/pkg/profiles/profiles_ini_io.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_fixed.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_ncfile.F MITgcm-checkpoint68i/pkg/profiles/profiles_init_varia.F MITgcm-checkpoint68i/pkg/profiles/profiles_inloop.F MITgcm-checkpoint68i/pkg/profiles/profiles_interp.F MITgcm-checkpoint68i/pkg/profiles/profiles_readparms.F MITgcm-checkpoint68i/pkg/profiles/profiles_readvector.F MITgcm-checkpoint68i/pkg/ptracers/ MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_FIELDS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_MOD.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_OPTIONS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_PARAMS.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_SIZE.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_START.h MITgcm-checkpoint68i/pkg/ptracers/PTRACERS_TAVE.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad.flow MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_diff.list MITgcm-checkpoint68i/pkg/ptracers/ptracers_ad_dump.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_adcommon.h MITgcm-checkpoint68i/pkg/ptracers/ptracers_apply_forcing.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_calc_wsurf_tr.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_check_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_convect.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_debug.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_diagnostics_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_data_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_dyn_state_mod.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_fields_blocking_exch.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_forcing_surf.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_fixed.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_init_varia.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_integrate.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_mnc_init.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_monitor_ad.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_output.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_read_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_readparms.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_reset.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_set_iolabel.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_switch_onoff.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_turnoff_io.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_pickup.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_state.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_write_timeave.F MITgcm-checkpoint68i/pkg/ptracers/ptracers_zonal_filt_apply.F MITgcm-checkpoint68i/pkg/rbcs/ MITgcm-checkpoint68i/pkg/rbcs/RBCS_FIELDS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_OPTIONS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_PARAMS.h MITgcm-checkpoint68i/pkg/rbcs/RBCS_SIZE.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/rbcs/rbcs_ad_diff.list MITgcm-checkpoint68i/pkg/rbcs/rbcs_add_tendency.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_fields_load.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_fixed.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_init_varia.F MITgcm-checkpoint68i/pkg/rbcs/rbcs_readparms.F MITgcm-checkpoint68i/pkg/regrid/ MITgcm-checkpoint68i/pkg/regrid/Makefile MITgcm-checkpoint68i/pkg/regrid/REGRID.h MITgcm-checkpoint68i/pkg/regrid/REGRID_OPTIONS.h MITgcm-checkpoint68i/pkg/regrid/REGRID_SIZE.h MITgcm-checkpoint68i/pkg/regrid/regrid_check.F MITgcm-checkpoint68i/pkg/regrid/regrid_description.tex MITgcm-checkpoint68i/pkg/regrid/regrid_init_fixed.F MITgcm-checkpoint68i/pkg/regrid/regrid_init_varia.F MITgcm-checkpoint68i/pkg/regrid/regrid_mnc_init.F MITgcm-checkpoint68i/pkg/regrid/regrid_readparms.F MITgcm-checkpoint68i/pkg/regrid/regrid_scalar_out.template MITgcm-checkpoint68i/pkg/runclock/ MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK.h MITgcm-checkpoint68i/pkg/runclock/RUNCLOCK_OPTIONS.h MITgcm-checkpoint68i/pkg/runclock/runclock_check.F MITgcm-checkpoint68i/pkg/runclock/runclock_continue.F MITgcm-checkpoint68i/pkg/runclock/runclock_gettime.F MITgcm-checkpoint68i/pkg/runclock/runclock_init.F MITgcm-checkpoint68i/pkg/runclock/runclock_readparms.F MITgcm-checkpoint68i/pkg/rw/ MITgcm-checkpoint68i/pkg/rw/RW_MFLDS.h MITgcm-checkpoint68i/pkg/rw/RW_OPTIONS.h MITgcm-checkpoint68i/pkg/rw/get_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/read_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/read_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/read_mflds.F MITgcm-checkpoint68i/pkg/rw/read_rec.F MITgcm-checkpoint68i/pkg/rw/rw_ad.flow MITgcm-checkpoint68i/pkg/rw/rw_ad_diff.list MITgcm-checkpoint68i/pkg/rw/rw_get_suffix.F MITgcm-checkpoint68i/pkg/rw/set_write_global_fld.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_s3d_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xy_rs.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rl.F MITgcm-checkpoint68i/pkg/rw/write_fld_xyz_rs.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rl.F MITgcm-checkpoint68i/pkg/rw/write_glvec_rs.F MITgcm-checkpoint68i/pkg/rw/write_local_rl.F MITgcm-checkpoint68i/pkg/rw/write_local_rs.F MITgcm-checkpoint68i/pkg/rw/write_rec.F MITgcm-checkpoint68i/pkg/salt_plume/ MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME.h MITgcm-checkpoint68i/pkg/salt_plume/SALT_PLUME_OPTIONS.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_ad_diff.list MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_apply.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_calc_depth.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_check.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_description.tex MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_fill.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_diagnostics_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_do_exch.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_forcing_surf.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_frac.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_fixed.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_init_varia.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_mnc_init.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_readparms.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_s.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_tendency_apply_t.F MITgcm-checkpoint68i/pkg/salt_plume/salt_plume_volfrac.F MITgcm-checkpoint68i/pkg/sbo/ MITgcm-checkpoint68i/pkg/sbo/SBO.h MITgcm-checkpoint68i/pkg/sbo/SBO_OPTIONS.h MITgcm-checkpoint68i/pkg/sbo/sbo_calc.F MITgcm-checkpoint68i/pkg/sbo/sbo_check.F MITgcm-checkpoint68i/pkg/sbo/sbo_description.tex MITgcm-checkpoint68i/pkg/sbo/sbo_output.F MITgcm-checkpoint68i/pkg/sbo/sbo_readparms.F MITgcm-checkpoint68i/pkg/sbo/sbo_rho.F MITgcm-checkpoint68i/pkg/seaice/ MITgcm-checkpoint68i/pkg/seaice/SEAICE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_COST.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_OPTIONS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_PARAMS.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_SIZE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TAVE.h MITgcm-checkpoint68i/pkg/seaice/SEAICE_TRACER.h MITgcm-checkpoint68i/pkg/seaice/advect.F MITgcm-checkpoint68i/pkg/seaice/cost_ice_test.F MITgcm-checkpoint68i/pkg/seaice/diffus.F MITgcm-checkpoint68i/pkg/seaice/dynsolver.F MITgcm-checkpoint68i/pkg/seaice/lsr.F MITgcm-checkpoint68i/pkg/seaice/ostres.F MITgcm-checkpoint68i/pkg/seaice/seaice.flow MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/seaice/seaice_ad_diff.list MITgcm-checkpoint68i/pkg/seaice/seaice_ad_dump.F MITgcm-checkpoint68i/pkg/seaice/seaice_advdiff.F MITgcm-checkpoint68i/pkg/seaice/seaice_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_bottomdrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_budget_ocean.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_ice_strength.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_lhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_residual.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_rhs.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_strainrates.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_stressdiv.F MITgcm-checkpoint68i/pkg/seaice/seaice_calc_viscosities.F MITgcm-checkpoint68i/pkg/seaice/seaice_check.F MITgcm-checkpoint68i/pkg/seaice/seaice_check_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_accumulate_mean.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_areasst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_concentration.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_driver.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_export.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_final.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sensi.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sss.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_sst.F MITgcm-checkpoint68i/pkg/seaice/seaice_cost_weights.F MITgcm-checkpoint68i/pkg/seaice/seaice_ctrl_map_ini.F MITgcm-checkpoint68i/pkg/seaice/seaice_description.tex MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_diagnostics_state.F MITgcm-checkpoint68i/pkg/seaice/seaice_diffusion.F MITgcm-checkpoint68i/pkg/seaice/seaice_do_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_dynsolver.F MITgcm-checkpoint68i/pkg/seaice/seaice_evp.F MITgcm-checkpoint68i/pkg/seaice/seaice_fake.F MITgcm-checkpoint68i/pkg/seaice/seaice_fgmres.F MITgcm-checkpoint68i/pkg/seaice/seaice_freedrift.F MITgcm-checkpoint68i/pkg/seaice/seaice_get_dynforcing.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth.F MITgcm-checkpoint68i/pkg/seaice/seaice_growth_adx.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_fixed.F MITgcm-checkpoint68i/pkg/seaice/seaice_init_varia.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_redist.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_remap.F MITgcm-checkpoint68i/pkg/seaice/seaice_itd_sum.F MITgcm-checkpoint68i/pkg/seaice/seaice_jacvec.F MITgcm-checkpoint68i/pkg/seaice/seaice_jfnk.F MITgcm-checkpoint68i/pkg/seaice/seaice_krylov.F MITgcm-checkpoint68i/pkg/seaice/seaice_lsr.F MITgcm-checkpoint68i/pkg/seaice/seaice_map_thsice.F MITgcm-checkpoint68i/pkg/seaice/seaice_mnc_init.F MITgcm-checkpoint68i/pkg/seaice/seaice_model.F MITgcm-checkpoint68i/pkg/seaice/seaice_mom_advection.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor.F MITgcm-checkpoint68i/pkg/seaice/seaice_monitor_ad.F MITgcm-checkpoint68i/pkg/seaice/seaice_obcs_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_ocean_stress.F MITgcm-checkpoint68i/pkg/seaice/seaice_oceandrag_coeffs.F MITgcm-checkpoint68i/pkg/seaice/seaice_output.F MITgcm-checkpoint68i/pkg/seaice/seaice_preconditioner.F MITgcm-checkpoint68i/pkg/seaice/seaice_prepare_ridging.F MITgcm-checkpoint68i/pkg/seaice/seaice_read_pickup.F MITgcm-checkpoint68i/pkg/seaice/seaice_readparms.F MITgcm-checkpoint68i/pkg/seaice/seaice_reg_ridge.F MITgcm-checkpoint68i/pkg/seaice/seaice_solve4temp.F MITgcm-checkpoint68i/pkg/seaice/seaice_summary.F MITgcm-checkpoint68i/pkg/seaice/seaice_tracer_phys.F MITgcm-checkpoint68i/pkg/seaice/seaice_turnoff_io.F MITgcm-checkpoint68i/pkg/seaice/seaice_write_pickup.F MITgcm-checkpoint68i/pkg/shap_filt/ MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT.h MITgcm-checkpoint68i/pkg/shap_filt/SHAP_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_ad_diff.list MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_ts.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_apply_uv.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_computvort.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_diagnostics_init.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_init_fixed.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_readparms.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_relvort3.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracer_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_tracerold.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_u.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s1.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s2c.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_uv_s4.F MITgcm-checkpoint68i/pkg/shap_filt/shap_filt_v.F MITgcm-checkpoint68i/pkg/shelfice/ MITgcm-checkpoint68i/pkg/shelfice/SHELFICE.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_COST.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_OPTIONS.h MITgcm-checkpoint68i/pkg/shelfice/SHELFICE_TAVE.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/shelfice/shelfice_ad_diff.list MITgcm-checkpoint68i/pkg/shelfice/shelfice_check.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_accumulate.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_final.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_cost_shifwflx.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_diagnostics_drag.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_forcing_surf.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_depths.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_fixed.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_init_varia.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mask_seaice.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_mnc_init.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_output.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_read_pickup.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_readparms.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_c_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_calc_w.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_state.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remesh_uv_mask.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_remeshing.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_step_icemass.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_thermodynamics.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_u_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_v_drag_coeff.F MITgcm-checkpoint68i/pkg/shelfice/shelfice_write_pickup.F MITgcm-checkpoint68i/pkg/showflops/ MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_INIT.h MITgcm-checkpoint68i/pkg/showflops/SHOWFLOPS_OPTIONS.h MITgcm-checkpoint68i/pkg/showflops/showflops_ad.flow MITgcm-checkpoint68i/pkg/showflops/showflops_init.F MITgcm-checkpoint68i/pkg/showflops/showflops_inloop.F MITgcm-checkpoint68i/pkg/showflops/showflops_insolve.F MITgcm-checkpoint68i/pkg/smooth/ MITgcm-checkpoint68i/pkg/smooth/SMOOTH.h MITgcm-checkpoint68i/pkg/smooth/SMOOTH_OPTIONS.h MITgcm-checkpoint68i/pkg/smooth/smooth2d.F MITgcm-checkpoint68i/pkg/smooth/smooth3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_ad_diff.list MITgcm-checkpoint68i/pkg/smooth/smooth_basic2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_check.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl2dw.F MITgcm-checkpoint68i/pkg/smooth/smooth_correl3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_description.tex MITgcm-checkpoint68i/pkg/smooth/smooth_diff2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_diff3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_filtervar3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_hetero2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_impldiff.F MITgcm-checkpoint68i/pkg/smooth/smooth_init2d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init3d.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_fixed.F MITgcm-checkpoint68i/pkg/smooth/smooth_init_varia.F MITgcm-checkpoint68i/pkg/smooth/smooth_readparms.F MITgcm-checkpoint68i/pkg/smooth/smooth_rhs.F MITgcm-checkpoint68i/pkg/sphere/ MITgcm-checkpoint68i/pkg/sphere/exch_all_2d_rl.F MITgcm-checkpoint68i/pkg/sphere/sphere.F MITgcm-checkpoint68i/pkg/sphere/sphere.h MITgcm-checkpoint68i/pkg/sphere/sphere_ad.flow MITgcm-checkpoint68i/pkg/sphere/sphere_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/ MITgcm-checkpoint68i/pkg/streamice/STREAMICE.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_ADV.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_BDRY.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CG.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_CTRL_FLUX.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_OPTIONS.h MITgcm-checkpoint68i/pkg/streamice/STREAMICE_PETSC.h MITgcm-checkpoint68i/pkg/streamice/adstreamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/adstreamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_prime_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/eta_gl_streamice_prime.F MITgcm-checkpoint68i/pkg/streamice/phi_gl_streamice.F MITgcm-checkpoint68i/pkg/streamice/slope_limiter.F MITgcm-checkpoint68i/pkg/streamice/streamice.flow MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/streamice/streamice_ad_diff.list MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_x.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_flux_fl_y.F MITgcm-checkpoint68i/pkg/streamice/streamice_adv_front.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_2dtracer.F MITgcm-checkpoint68i/pkg/streamice/streamice_advect_thickness.F MITgcm-checkpoint68i/pkg/streamice/streamice_apply_flux_ctrl.F MITgcm-checkpoint68i/pkg/streamice/streamice_bstress_exponent.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_functions.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_matfree.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_solve_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_cg_wrapper.F MITgcm-checkpoint68i/pkg/streamice/streamice_check.F MITgcm-checkpoint68i/pkg/streamice/streamice_cost_surf_accum.F MITgcm-checkpoint68i/pkg/streamice/streamice_diagnostics_state.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_fd.F MITgcm-checkpoint68i/pkg/streamice/streamice_driving_stress_ppm.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump.F MITgcm-checkpoint68i/pkg/streamice/streamice_dump_ad.F MITgcm-checkpoint68i/pkg/streamice/streamice_fields_load.F MITgcm-checkpoint68i/pkg/streamice/streamice_finalize_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_forced_buttress.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_fp_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_fp_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err.F MITgcm-checkpoint68i/pkg/streamice/streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_diagnostics.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_fixed.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_init_varia.F MITgcm-checkpoint68i/pkg/streamice/streamice_initialise_petsc.F MITgcm-checkpoint68i/pkg/streamice/streamice_invert_surf_forthick.F MITgcm-checkpoint68i/pkg/streamice/streamice_petsc_numerate.F MITgcm-checkpoint68i/pkg/streamice/streamice_petscmatdestroy.F MITgcm-checkpoint68i/pkg/streamice/streamice_read_pickup.F MITgcm-checkpoint68i/pkg/streamice/streamice_readparms.F MITgcm-checkpoint68i/pkg/streamice/streamice_taub.F MITgcm-checkpoint68i/pkg/streamice/streamice_timestep.F MITgcm-checkpoint68i/pkg/streamice/streamice_tridiag_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_upd_ffrac_uncoupled.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phi.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_phistage.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve.F MITgcm-checkpoint68i/pkg/streamice/streamice_vel_solve_openad.F MITgcm-checkpoint68i/pkg/streamice/streamice_velmask_upd.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta.F MITgcm-checkpoint68i/pkg/streamice/streamice_visc_beta_hybrid.F MITgcm-checkpoint68i/pkg/streamice/streamice_write_pickup.F MITgcm-checkpoint68i/pkg/thsice/ MITgcm-checkpoint68i/pkg/thsice/THSICE_COST.h MITgcm-checkpoint68i/pkg/thsice/THSICE_DEBUG.h MITgcm-checkpoint68i/pkg/thsice/THSICE_OPTIONS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_PARAMS.h MITgcm-checkpoint68i/pkg/thsice/THSICE_SIZE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_TAVE.h MITgcm-checkpoint68i/pkg/thsice/THSICE_VARS.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad.flow MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev1_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev2_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev3_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_check_lev4_dir.h MITgcm-checkpoint68i/pkg/thsice/thsice_ad_diff.list MITgcm-checkpoint68i/pkg/thsice/thsice_advdiff.F MITgcm-checkpoint68i/pkg/thsice/thsice_advection.F MITgcm-checkpoint68i/pkg/thsice/thsice_albedo.F MITgcm-checkpoint68i/pkg/thsice/thsice_ave.F MITgcm-checkpoint68i/pkg/thsice/thsice_balance_frw.F MITgcm-checkpoint68i/pkg/thsice/thsice_calc_thickn.F MITgcm-checkpoint68i/pkg/thsice/thsice_check.F MITgcm-checkpoint68i/pkg/thsice/thsice_check_conserv.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_driver.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_final.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_init_varia.F MITgcm-checkpoint68i/pkg/thsice/thsice_cost_test.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_diagnostics_state.F MITgcm-checkpoint68i/pkg/thsice/thsice_diffusion.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_advect.F MITgcm-checkpoint68i/pkg/thsice/thsice_do_exch.F MITgcm-checkpoint68i/pkg/thsice/thsice_extend.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_bulkf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_precip.F MITgcm-checkpoint68i/pkg/thsice/thsice_get_velocity.F MITgcm-checkpoint68i/pkg/thsice/thsice_impl_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_ini_vars.F MITgcm-checkpoint68i/pkg/thsice/thsice_init_fixed.F MITgcm-checkpoint68i/pkg/thsice/thsice_main.F MITgcm-checkpoint68i/pkg/thsice/thsice_map_exf.F MITgcm-checkpoint68i/pkg/thsice/thsice_mnc_init.F MITgcm-checkpoint68i/pkg/thsice/thsice_monitor.F MITgcm-checkpoint68i/pkg/thsice/thsice_output.F MITgcm-checkpoint68i/pkg/thsice/thsice_read_pickup.F MITgcm-checkpoint68i/pkg/thsice/thsice_readparms.F MITgcm-checkpoint68i/pkg/thsice/thsice_reshape_layers.F MITgcm-checkpoint68i/pkg/thsice/thsice_salt_plume.F MITgcm-checkpoint68i/pkg/thsice/thsice_slab_ocean.F MITgcm-checkpoint68i/pkg/thsice/thsice_solve4temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_fwd.F MITgcm-checkpoint68i/pkg/thsice/thsice_step_temp.F MITgcm-checkpoint68i/pkg/thsice/thsice_test_addfluid.h MITgcm-checkpoint68i/pkg/thsice/thsice_turnoff_io.F MITgcm-checkpoint68i/pkg/thsice/thsice_write_pickup.F MITgcm-checkpoint68i/pkg/timeave/ MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_OPTIONS.h MITgcm-checkpoint68i/pkg/timeave/TIMEAVE_STATV.h MITgcm-checkpoint68i/pkg/timeave/timeave_ad_diff.list MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1k1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_1vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_2vfc.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumul_dif_1t.F MITgcm-checkpoint68i/pkg/timeave/timeave_cumulate.F MITgcm-checkpoint68i/pkg/timeave/timeave_description.tex MITgcm-checkpoint68i/pkg/timeave/timeave_init_fixed.F MITgcm-checkpoint68i/pkg/timeave/timeave_norma_2v.F MITgcm-checkpoint68i/pkg/timeave/timeave_normalize.F MITgcm-checkpoint68i/pkg/timeave/timeave_reset.F MITgcm-checkpoint68i/pkg/timeave/timeave_statv_write.F MITgcm-checkpoint68i/pkg/timeave/timeave_statvars.F MITgcm-checkpoint68i/pkg/timeave/timeave_surf_flux.F MITgcm-checkpoint68i/pkg/zonal_filt/ MITgcm-checkpoint68i/pkg/zonal_filt/FFTPACK.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT.h MITgcm-checkpoint68i/pkg/zonal_filt/ZONAL_FILT_OPTIONS.h MITgcm-checkpoint68i/pkg/zonal_filt/fftpack.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_ts.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_apply_uv.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_init.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_nofill.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_postsmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_presmooth.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filt_readparms.F MITgcm-checkpoint68i/pkg/zonal_filt/zonal_filter.F MITgcm-checkpoint68i/tools/ MITgcm-checkpoint68i/tools/OAD_support/ MITgcm-checkpoint68i/tools/OAD_support/OAD_active.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_regular_cp.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_rev.F90 MITgcm-checkpoint68i/tools/OAD_support/OAD_tape.F90 MITgcm-checkpoint68i/tools/OAD_support/ad_inline.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_read_xyz.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.active_write_xy.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.dummy_in_stepping.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.exch1_rs.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_max_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_r8.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.global_sum_tile_rl.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.regular.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.revolve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.sa_cg2d.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.split_non_anonymous.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_cg_solve.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_fp_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_get_vel_resid_err_oad.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_invert_surf_forthick.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_smooth_adjoint_field.F MITgcm-checkpoint68i/tools/OAD_support/ad_template.streamice_vel_phistage.F MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetHeaders.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.awk MITgcm-checkpoint68i/tools/OAD_support/cb2mGetModules.csh MITgcm-checkpoint68i/tools/OAD_support/cb2mUseModules.bash MITgcm-checkpoint68i/tools/OAD_support/dontCompile MITgcm-checkpoint68i/tools/OAD_support/dontTransform MITgcm-checkpoint68i/tools/OAD_support/fixData.sed MITgcm-checkpoint68i/tools/OAD_support/iaddr.c MITgcm-checkpoint68i/tools/OAD_support/insertTemplateDir.bash MITgcm-checkpoint68i/tools/OAD_support/keepOriginal MITgcm-checkpoint68i/tools/OAD_support/revolve.F90 MITgcm-checkpoint68i/tools/OAD_support/stop2print.sed MITgcm-checkpoint68i/tools/OAD_support/strip.sed MITgcm-checkpoint68i/tools/OAD_support/timeRatio.c MITgcm-checkpoint68i/tools/OAD_support/w2f__types.F90 MITgcm-checkpoint68i/tools/ad_taf_output.f.adtrick.diff MITgcm-checkpoint68i/tools/ad_taf_output.f.diva.diff_del1 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MITgcm-checkpoint68i/verification/vermix/results/output.ggl90.txt MITgcm-checkpoint68i/verification/vermix/results/output.my82.txt MITgcm-checkpoint68i/verification/vermix/results/output.opps.txt MITgcm-checkpoint68i/verification/vermix/results/output.pp81.txt MITgcm-checkpoint68i/verification/vermix/results/output.txt MITgcm-checkpoint68i/verification/vermix/run/ MITgcm-checkpoint68i/verification/vermix/run/.gitignore [41;37m step #5: BuildMITgcm [0m GENMAKE : A program for GENerating MAKEfiles for the MITgcm project. For a quick list of options, use "genmake2 -h" or for more detail see the documentation, section "Building the model" (under "Getting Started") at: https://mitgcm.readthedocs.io/ === Processing options files and arguments === getting local config information: none found getting OPTFILE information: Warning: no OPTFILE specified so we'll look for possible settings === Searching for possible settings for OPTFILE === The platform appears to be: linux_amd64 The possible FORTRAN compilers found in your path are: gfortran f77 f95 mpif77 Setting OPTFILE to: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran using OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/build_options/linux_amd64_gfortran" get Compiler-version: '12' getting AD_OPTFILE information: using AD_OPTFILE="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/adjoint_options/adjoint_default" check Fortran Compiler... pass (set FC_CHECK=5/5) check makedepend (local: 0, system: 1, 1) Turning on MPI cpp macros === Checking system libraries === Do we have the system() command using mpif77... yes Do we have the fdate() command using mpif77... yes Do we have the etime() command using mpif77... c,r: yes (SbR) Can we call simple C routines (here, "cloc()") using mpif77... yes Can we unlimit the stack size using mpif77... yes Can we register a signal handler using mpif77... yes Can we use stat() through C calls... yes Can we create NetCDF-enabled binaries... no skip check for LAPACK Libs Can we call FLUSH intrinsic subroutine... yes === Setting defaults === Adding MODS directories: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code Making source files in eesupp from templates Making source files in pkg/exch2 from templates Making source files in pkg/regrid from templates === Determining package settings === getting package dependency info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_depend getting package groups info from /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/pkg_groups checking list of packages to compile: using PKG_LIST="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/packages.conf" before group expansion packages are: gfd obcs shelfice diagnostics timeave replacing "gfd" with: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor after group expansion packages are: mom_common mom_fluxform mom_vecinv generic_advdiff debug mdsio rw monitor obcs shelfice diagnostics timeave applying DISABLE settings applying ENABLE settings packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave applying package dependency rules packages are: debug diagnostics generic_advdiff mdsio mom_common mom_fluxform mom_vecinv monitor obcs rw shelfice timeave Adding STANDARDDIRS='eesupp model' Searching for *OPTIONS.h files in order to warn about the presence of "#define "-type statements that are no longer allowed: found CPP_EEOPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h" found CPP_OPTIONS="/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h" Creating the list of files for the adjoint compiler. === Creating the Makefile === setting INCLUDES Determining the list of source and include files Writing makefile: Makefile Add the source list for AD code generation Making list of "exceptions" that need ".p" files Making list of NOOPTFILES Add rules for links Adding makedepend marker === Done === original 'Makefile' generated successfully => next steps: > make depend > make (<-- to generate executable) make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' if [ ! -L cpl_issm.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/cpl_issm.F cpl_issm.F; fi if [ ! -L do_oceanic_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/do_oceanic_phys.F do_oceanic_phys.F; fi if [ ! -L eeboot_minimal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eeboot_minimal.F eeboot_minimal.F; fi if [ ! -L eedie.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/eedie.F eedie.F; fi if [ ! -L chksum_tiled.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/chksum_tiled.F chksum_tiled.F; fi if [ ! -L debug_call.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_call.F debug_call.F; fi if [ ! -L debug_cs_corner_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_cs_corner_uv.F debug_cs_corner_uv.F; fi if [ ! -L debug_enter.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_enter.F debug_enter.F; fi if [ ! -L debug_fld_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rl.F debug_fld_stats_rl.F; fi if [ ! -L debug_fld_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_fld_stats_rs.F debug_fld_stats_rs.F; fi if [ ! -L debug_leave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_leave.F debug_leave.F; fi if [ ! -L debug_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_msg.F debug_msg.F; fi if [ ! -L debug_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rl.F debug_stats_rl.F; fi if [ ! -L debug_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/debug_stats_rs.F debug_stats_rs.F; fi if [ ! -L fill_in_corners_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/fill_in_corners_rl.F fill_in_corners_rl.F; fi if [ ! -L write_fullarray_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rl.F write_fullarray_rl.F; fi if [ ! -L write_fullarray_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/write_fullarray_rs.F write_fullarray_rs.F; fi if [ ! -L diag_calc_psivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_calc_psivel.F diag_calc_psivel.F; fi if [ ! -L diag_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_cg2d.F diag_cg2d.F; fi if [ ! -L diagnostics_addtolist.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_addtolist.F diagnostics_addtolist.F; fi if [ ! -L diagnostics_calc_phivel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_calc_phivel.F diagnostics_calc_phivel.F; fi if [ ! -L diagnostics_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_check.F diagnostics_check.F; fi if [ ! -L diagnostics_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_clear.F diagnostics_clear.F; fi if [ ! -L diagnostics_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill.F diagnostics_fill.F; fi if [ ! -L diagnostics_fill_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_field.F diagnostics_fill_field.F; fi if [ ! -L diagnostics_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_rs.F diagnostics_fill_rs.F; fi if [ ! -L diagnostics_fill_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fill_state.F diagnostics_fill_state.F; fi if [ ! -L diagnostics_fract_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_fract_fill.F diagnostics_fract_fill.F; fi if [ ! -L diagnostics_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_ini_io.F diagnostics_ini_io.F; fi if [ ! -L diagnostics_init_early.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_early.F diagnostics_init_early.F; fi if [ ! -L diagnostics_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_fixed.F diagnostics_init_fixed.F; fi if [ ! -L diagnostics_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_init_varia.F diagnostics_init_varia.F; fi if [ ! -L diagnostics_interp_p2p.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_p2p.F diagnostics_interp_p2p.F; fi if [ ! -L diagnostics_interp_vert.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_interp_vert.F diagnostics_interp_vert.F; fi if [ ! -L diagnostics_is_on.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_is_on.F diagnostics_is_on.F; fi if [ ! -L diagnostics_list_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_list_check.F diagnostics_list_check.F; fi if [ ! -L diagnostics_main_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_main_init.F diagnostics_main_init.F; fi if [ ! -L diagnostics_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_mnc_out.F diagnostics_mnc_out.F; fi if [ ! -L diagnostics_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_out.F diagnostics_out.F; fi if [ ! -L diagnostics_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_readparms.F diagnostics_readparms.F; fi if [ ! -L diagnostics_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_read_pickup.F diagnostics_read_pickup.F; fi if [ ! -L diagnostics_scale_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill.F diagnostics_scale_fill.F; fi if [ ! -L diagnostics_scale_fill_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_scale_fill_rs.F diagnostics_scale_fill_rs.F; fi if [ ! -L diagnostics_set_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_calc.F diagnostics_set_calc.F; fi if [ ! -L diagnostics_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_setdiag.F diagnostics_setdiag.F; fi if [ ! -L diagnostics_set_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_levels.F diagnostics_set_levels.F; fi if [ ! -L diagnostics_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_set_pointers.F diagnostics_set_pointers.F; fi if [ ! -L diagnostics_status_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_status_error.F diagnostics_status_error.F; fi if [ ! -L diagnostics_sum_levels.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_sum_levels.F diagnostics_sum_levels.F; fi if [ ! -L diagnostics_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_summary.F diagnostics_summary.F; fi if [ ! -L diagnostics_switch_onoff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_switch_onoff.F diagnostics_switch_onoff.F; fi if [ ! -L diagnostics_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_utils.F diagnostics_utils.F; fi if [ ! -L diagnostics_write_adj.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_adj.F diagnostics_write_adj.F; fi if [ ! -L diagnostics_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write.F diagnostics_write.F; fi if [ ! -L diagnostics_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagnostics_write_pickup.F diagnostics_write_pickup.F; fi if [ ! -L diagstats_ascii_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ascii_out.F diagstats_ascii_out.F; fi if [ ! -L diagstats_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_calc.F diagstats_calc.F; fi if [ ! -L diagstats_clear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_clear.F diagstats_clear.F; fi if [ ! -L diagstats_close_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_close_io.F diagstats_close_io.F; fi if [ ! -L diagstats_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_fill.F diagstats_fill.F; fi if [ ! -L diagstats_global.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_global.F diagstats_global.F; fi if [ ! -L diagstats_ini_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_ini_io.F diagstats_ini_io.F; fi if [ ! -L diagstats_local.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_local.F diagstats_local.F; fi if [ ! -L diagstats_mnc_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_mnc_out.F diagstats_mnc_out.F; fi if [ ! -L diagstats_others_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_others_calc.F diagstats_others_calc.F; fi if [ ! -L diagstats_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_output.F diagstats_output.F; fi if [ ! -L diagstats_setdiag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_setdiag.F diagstats_setdiag.F; fi if [ ! -L diagstats_set_pointers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_pointers.F diagstats_set_pointers.F; fi if [ ! -L diagstats_set_regions.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diagstats_set_regions.F diagstats_set_regions.F; fi if [ ! -L diag_vegtile_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/diag_vegtile_fill.F diag_vegtile_fill.F; fi if [ ! -L gad_advection.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advection.F gad_advection.F; fi if [ ! -L gad_advscheme.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_advscheme.F gad_advscheme.F; fi if [ ! -L gad_biharm_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_r.F gad_biharm_r.F; fi if [ ! -L gad_biharm_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_x.F gad_biharm_x.F; fi if [ ! -L gad_biharm_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_biharm_y.F gad_biharm_y.F; fi if [ ! -L gad_c2_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_r.F gad_c2_adv_r.F; fi if [ ! -L gad_c2_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_x.F gad_c2_adv_x.F; fi if [ ! -L gad_c2_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_adv_y.F gad_c2_adv_y.F; fi if [ ! -L gad_c2_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c2_impl_r.F gad_c2_impl_r.F; fi if [ ! -L gad_c4_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_r.F gad_c4_adv_r.F; fi if [ ! -L gad_c4_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_x.F gad_c4_adv_x.F; fi if [ ! -L gad_c4_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_c4_adv_y.F gad_c4_adv_y.F; fi if [ ! -L gad_calc_rhs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_calc_rhs.F gad_calc_rhs.F; fi if [ ! -L gad_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_check.F gad_check.F; fi if [ ! -L gad_del2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_del2.F gad_del2.F; fi if [ ! -L gad_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_init.F gad_diagnostics_init.F; fi if [ ! -L gad_diagnostics_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diagnostics_state.F gad_diagnostics_state.F; fi if [ ! -L gad_diff_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_r.F gad_diff_r.F; fi if [ ! -L gad_diff_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_x.F gad_diff_x.F; fi if [ ! -L gad_diff_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_diff_y.F gad_diff_y.F; fi if [ ! -L gad_dst2u1_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_r.F gad_dst2u1_adv_r.F; fi if [ ! -L gad_dst2u1_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_x.F gad_dst2u1_adv_x.F; fi if [ ! -L gad_dst2u1_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_adv_y.F gad_dst2u1_adv_y.F; fi if [ ! -L gad_dst2u1_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst2u1_impl_r.F gad_dst2u1_impl_r.F; fi if [ ! -L gad_dst3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_r.F gad_dst3_adv_r.F; fi if [ ! -L gad_dst3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_x.F gad_dst3_adv_x.F; fi if [ ! -L gad_dst3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3_adv_y.F gad_dst3_adv_y.F; fi if [ ! -L gad_dst3fl_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_r.F gad_dst3fl_adv_r.F; fi if [ ! -L gad_dst3fl_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_x.F gad_dst3fl_adv_x.F; fi if [ ! -L gad_dst3fl_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_adv_y.F gad_dst3fl_adv_y.F; fi if [ ! -L gad_dst3fl_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_dst3fl_impl_r.F gad_dst3fl_impl_r.F; fi if [ ! -L gad_exch_som.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_exch_som.F gad_exch_som.F; fi if [ ! -L gad_fluxlimit_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_r.F gad_fluxlimit_adv_r.F; fi if [ ! -L gad_fluxlimit_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_x.F gad_fluxlimit_adv_x.F; fi if [ ! -L gad_fluxlimit_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_adv_y.F gad_fluxlimit_adv_y.F; fi if [ ! -L gad_fluxlimit_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_fluxlimit_impl_r.F gad_fluxlimit_impl_r.F; fi if [ ! -L gad_grad_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_x.F gad_grad_x.F; fi if [ ! -L gad_grad_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_grad_y.F gad_grad_y.F; fi if [ ! -L gad_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_implicit_r.F gad_implicit_r.F; fi if [ ! -L gad_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_fixed.F gad_init_fixed.F; fi if [ ! -L gad_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_init_varia.F gad_init_varia.F; fi if [ ! -L gad_os7mp_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_r.F gad_os7mp_adv_r.F; fi if [ ! -L gad_os7mp_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_x.F gad_os7mp_adv_x.F; fi if [ ! -L gad_os7mp_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_os7mp_adv_y.F gad_os7mp_adv_y.F; fi if [ ! -L gad_osc_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_r.F gad_osc_hat_r.F; fi if [ ! -L gad_osc_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_x.F gad_osc_hat_x.F; fi if [ ! -L gad_osc_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_hat_y.F gad_osc_hat_y.F; fi if [ ! -L gad_osc_mul_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_r.F gad_osc_mul_r.F; fi if [ ! -L gad_osc_mul_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_x.F gad_osc_mul_x.F; fi if [ ! -L gad_osc_mul_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_osc_mul_y.F gad_osc_mul_y.F; fi if [ ! -L gad_plm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_plm_fun.F gad_plm_fun.F; fi if [ ! -L gad_ppm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_r.F gad_ppm_adv_r.F; fi if [ ! -L gad_ppm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_x.F gad_ppm_adv_x.F; fi if [ ! -L gad_ppm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_adv_y.F gad_ppm_adv_y.F; fi if [ ! -L gad_ppm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_r.F gad_ppm_flx_r.F; fi if [ ! -L gad_ppm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_x.F gad_ppm_flx_x.F; fi if [ ! -L gad_ppm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_flx_y.F gad_ppm_flx_y.F; fi if [ ! -L gad_ppm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_fun.F gad_ppm_fun.F; fi if [ ! -L gad_ppm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_r.F gad_ppm_hat_r.F; fi if [ ! -L gad_ppm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_x.F gad_ppm_hat_x.F; fi if [ ! -L gad_ppm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_hat_y.F gad_ppm_hat_y.F; fi if [ ! -L gad_ppm_p3e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_r.F gad_ppm_p3e_r.F; fi if [ ! -L gad_ppm_p3e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_x.F gad_ppm_p3e_x.F; fi if [ ! -L gad_ppm_p3e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ppm_p3e_y.F gad_ppm_p3e_y.F; fi if [ ! -L gad_pqm_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_r.F gad_pqm_adv_r.F; fi if [ ! -L gad_pqm_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_x.F gad_pqm_adv_x.F; fi if [ ! -L gad_pqm_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_adv_y.F gad_pqm_adv_y.F; fi if [ ! -L gad_pqm_flx_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_r.F gad_pqm_flx_r.F; fi if [ ! -L gad_pqm_flx_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_x.F gad_pqm_flx_x.F; fi if [ ! -L gad_pqm_flx_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_flx_y.F gad_pqm_flx_y.F; fi if [ ! -L gad_pqm_fun.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_fun.F gad_pqm_fun.F; fi if [ ! -L gad_pqm_hat_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_r.F gad_pqm_hat_r.F; fi if [ ! -L gad_pqm_hat_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_x.F gad_pqm_hat_x.F; fi if [ ! -L gad_pqm_hat_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_hat_y.F gad_pqm_hat_y.F; fi if [ ! -L gad_pqm_p5e_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_r.F gad_pqm_p5e_r.F; fi if [ ! -L gad_pqm_p5e_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_x.F gad_pqm_p5e_x.F; fi if [ ! -L gad_pqm_p5e_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_pqm_p5e_y.F gad_pqm_p5e_y.F; fi if [ ! -L gad_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_read_pickup.F gad_read_pickup.F; fi if [ ! -L gad_som_advect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_advect.F gad_som_advect.F; fi if [ ! -L gad_som_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_r.F gad_som_adv_r.F; fi if [ ! -L gad_som_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_x.F gad_som_adv_x.F; fi if [ ! -L gad_som_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_adv_y.F gad_som_adv_y.F; fi if [ ! -L gad_som_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_exchanges.F gad_som_exchanges.F; fi if [ ! -L gad_som_fill_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_fill_cs_corner.F gad_som_fill_cs_corner.F; fi if [ ! -L gad_som_lim_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_lim_r.F gad_som_lim_r.F; fi if [ ! -L gad_som_prep_cs_corner.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_som_prep_cs_corner.F gad_som_prep_cs_corner.F; fi if [ ! -L gad_u3_adv_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_r.F gad_u3_adv_r.F; fi if [ ! -L gad_u3_adv_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_x.F gad_u3_adv_x.F; fi if [ ! -L gad_u3_adv_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3_adv_y.F gad_u3_adv_y.F; fi if [ ! -L gad_u3c4_impl_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_u3c4_impl_r.F gad_u3c4_impl_r.F; fi if [ ! -L gad_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_write_pickup.F gad_write_pickup.F; fi if [ ! -L salt_fill.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/salt_fill.F salt_fill.F; fi if [ ! -L mdsio_buffertorl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertorl.F mdsio_buffertorl.F; fi if [ ! -L mdsio_buffertors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_buffertors.F mdsio_buffertors.F; fi if [ ! -L mdsio_check4file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_check4file.F mdsio_check4file.F; fi if [ ! -L mdsio_facef_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_facef_read.F mdsio_facef_read.F; fi if [ ! -L mdsio_gl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl.F mdsio_gl.F; fi if [ ! -L mdsio_gl_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_gl_slice.F mdsio_gl_slice.F; fi if [ ! -L mdsio_pass_r4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4torl.F mdsio_pass_r4torl.F; fi if [ ! -L mdsio_pass_r4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r4tors.F mdsio_pass_r4tors.F; fi if [ ! -L mdsio_pass_r8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8torl.F mdsio_pass_r8torl.F; fi if [ ! -L mdsio_pass_r8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_pass_r8tors.F mdsio_pass_r8tors.F; fi if [ ! -L mdsio_rd_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rl.F mdsio_rd_rec_rl.F; fi if [ ! -L mdsio_rd_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rd_rec_rs.F mdsio_rd_rec_rs.F; fi if [ ! -L mdsio_read_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_field.F mdsio_read_field.F; fi if [ ! -L mdsio_read_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_meta.F mdsio_read_meta.F; fi if [ ! -L mdsio_read_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_section.F mdsio_read_section.F; fi if [ ! -L mdsio_read_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_tape.F mdsio_read_tape.F; fi if [ ! -L mdsio_readvec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_readvec_loc.F mdsio_readvec_loc.F; fi if [ ! -L mdsio_read_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_read_whalos.F mdsio_read_whalos.F; fi if [ ! -L mdsio_rw_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_field.F mdsio_rw_field.F; fi if [ ! -L mdsio_rw_slice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_rw_slice.F mdsio_rw_slice.F; fi if [ ! -L mdsio_seg4torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4torl.F mdsio_seg4torl.F; fi if [ ! -L mdsio_seg4tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg4tors.F mdsio_seg4tors.F; fi if [ ! -L mdsio_seg8torl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8torl.F mdsio_seg8torl.F; fi if [ ! -L mdsio_seg8tors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_seg8tors.F mdsio_seg8tors.F; fi if [ ! -L mdsio_segxtorx_2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_segxtorx_2d.F mdsio_segxtorx_2d.F; fi if [ ! -L mdsio_write_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_field.F mdsio_write_field.F; fi if [ ! -L mdsio_writelocal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writelocal.F mdsio_writelocal.F; fi if [ ! -L mdsio_write_meta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_meta.F mdsio_write_meta.F; fi if [ ! -L mdsio_write_section.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_section.F mdsio_write_section.F; fi if [ ! -L mdsio_write_tape.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_tape.F mdsio_write_tape.F; fi if [ ! -L mdsio_writevec_loc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_writevec_loc.F mdsio_writevec_loc.F; fi if [ ! -L mdsio_write_whalos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_write_whalos.F mdsio_write_whalos.F; fi if [ ! -L mdsio_wr_metafiles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_metafiles.F mdsio_wr_metafiles.F; fi if [ ! -L mdsio_wr_rec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rl.F mdsio_wr_rec_rl.F; fi if [ ! -L mdsio_wr_rec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/mdsio_wr_rec_rs.F mdsio_wr_rec_rs.F; fi if [ ! -L mom_calc_3d_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_3d_strain.F mom_calc_3d_strain.F; fi if [ ! -L mom_calc_absvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_absvort3.F mom_calc_absvort3.F; fi if [ ! -L mom_calc_hdiv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hdiv.F mom_calc_hdiv.F; fi if [ ! -L mom_calc_hfacz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_hfacz.F mom_calc_hfacz.F; fi if [ ! -L mom_calc_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_ke.F mom_calc_ke.F; fi if [ ! -L mom_calc_relvort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_relvort3.F mom_calc_relvort3.F; fi if [ ! -L mom_calc_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_smag_3d.F mom_calc_smag_3d.F; fi if [ ! -L mom_calc_strain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_strain.F mom_calc_strain.F; fi if [ ! -L mom_calc_tension.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_tension.F mom_calc_tension.F; fi if [ ! -L mom_calc_visc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_calc_visc.F mom_calc_visc.F; fi if [ ! -L mom_diagnostics_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_diagnostics_init.F mom_diagnostics_init.F; fi if [ ! -L mom_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_hdissip.F mom_hdissip.F; fi if [ ! -L mom_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_init_fixed.F mom_init_fixed.F; fi if [ ! -L mom_quasihydrostatic.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_quasihydrostatic.F mom_quasihydrostatic.F; fi if [ ! -L mom_u_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_botdrag_coeff.F mom_u_botdrag_coeff.F; fi if [ ! -L mom_u_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_coriolis_nh.F mom_u_coriolis_nh.F; fi if [ ! -L mom_u_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_implicit_r.F mom_u_implicit_r.F; fi if [ ! -L mom_u_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_metric_nh.F mom_u_metric_nh.F; fi if [ ! -L mom_u_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_rviscflux.F mom_u_rviscflux.F; fi if [ ! -L mom_u_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_u_sidedrag.F mom_u_sidedrag.F; fi if [ ! -L mom_uv_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_uv_smag_3d.F mom_uv_smag_3d.F; fi if [ ! -L mom_v_botdrag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_botdrag_coeff.F mom_v_botdrag_coeff.F; fi if [ ! -L mom_v_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_coriolis_nh.F mom_v_coriolis_nh.F; fi if [ ! -L mom_v_implicit_r.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_implicit_r.F mom_v_implicit_r.F; fi if [ ! -L mom_visc_qgl_limit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_limit.F mom_visc_qgl_limit.F; fi if [ ! -L mom_visc_qgl_stretch.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_visc_qgl_stretch.F mom_visc_qgl_stretch.F; fi if [ ! -L mom_v_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_metric_nh.F mom_v_metric_nh.F; fi if [ ! -L mom_v_rviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_rviscflux.F mom_v_rviscflux.F; fi if [ ! -L mom_v_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_v_sidedrag.F mom_v_sidedrag.F; fi if [ ! -L mom_w_coriolis_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_coriolis_nh.F mom_w_coriolis_nh.F; fi if [ ! -L mom_w_metric_nh.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_metric_nh.F mom_w_metric_nh.F; fi if [ ! -L mom_w_sidedrag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_sidedrag.F mom_w_sidedrag.F; fi if [ ! -L mom_w_smag_3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/mom_w_smag_3d.F mom_w_smag_3d.F; fi if [ ! -L mom_calc_rtrans.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_calc_rtrans.F mom_calc_rtrans.F; fi if [ ! -L mom_fluxform.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_fluxform.F mom_fluxform.F; fi if [ ! -L mom_u_adv_uu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_uu.F mom_u_adv_uu.F; fi if [ ! -L mom_u_adv_vu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_vu.F mom_u_adv_vu.F; fi if [ ! -L mom_u_adv_wu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_adv_wu.F mom_u_adv_wu.F; fi if [ ! -L mom_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_coriolis.F mom_u_coriolis.F; fi if [ ! -L mom_u_del2u.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_del2u.F mom_u_del2u.F; fi if [ ! -L mom_u_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_cylinder.F mom_u_metric_cylinder.F; fi if [ ! -L mom_u_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_metric_sphere.F mom_u_metric_sphere.F; fi if [ ! -L mom_uv_boundary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_uv_boundary.F mom_uv_boundary.F; fi if [ ! -L mom_u_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_xviscflux.F mom_u_xviscflux.F; fi if [ ! -L mom_u_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_u_yviscflux.F mom_u_yviscflux.F; fi if [ ! -L mom_v_adv_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_uv.F mom_v_adv_uv.F; fi if [ ! -L mom_v_adv_vv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_vv.F mom_v_adv_vv.F; fi if [ ! -L mom_v_adv_wv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_adv_wv.F mom_v_adv_wv.F; fi if [ ! -L mom_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_coriolis.F mom_v_coriolis.F; fi if [ ! -L mom_v_del2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_del2v.F mom_v_del2v.F; fi if [ ! -L mom_v_metric_cylinder.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_cylinder.F mom_v_metric_cylinder.F; fi if [ ! -L mom_v_metric_sphere.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_metric_sphere.F mom_v_metric_sphere.F; fi if [ ! -L mom_v_xviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_xviscflux.F mom_v_xviscflux.F; fi if [ ! -L mom_v_yviscflux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/mom_v_yviscflux.F mom_v_yviscflux.F; fi if [ ! -L mom_vecinv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vecinv.F mom_vecinv.F; fi if [ ! -L mom_vi_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_coriolis.F mom_vi_coriolis.F; fi if [ ! -L mom_vi_del2uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_del2uv.F mom_vi_del2uv.F; fi if [ ! -L mom_vi_hdissip.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_hdissip.F mom_vi_hdissip.F; fi if [ ! -L mom_vi_u_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis_c4.F mom_vi_u_coriolis_c4.F; fi if [ ! -L mom_vi_u_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_coriolis.F mom_vi_u_coriolis.F; fi if [ ! -L mom_vi_u_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_grad_ke.F mom_vi_u_grad_ke.F; fi if [ ! -L mom_vi_u_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_u_vertshear.F mom_vi_u_vertshear.F; fi if [ ! -L mom_vi_v_coriolis_c4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis_c4.F mom_vi_v_coriolis_c4.F; fi if [ ! -L mom_vi_v_coriolis.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_coriolis.F mom_vi_v_coriolis.F; fi if [ ! -L mom_vi_v_grad_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_grad_ke.F mom_vi_v_grad_ke.F; fi if [ ! -L mom_vi_v_vertshear.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/mom_vi_v_vertshear.F mom_vi_v_vertshear.F; fi if [ ! -L mon_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcfl.F mon_advcfl.F; fi if [ ! -L mon_advcflw2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw2.F mon_advcflw2.F; fi if [ ! -L mon_advcflw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_advcflw.F mon_advcflw.F; fi if [ ! -L mon_calc_advcfl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_advcfl.F mon_calc_advcfl.F; fi if [ ! -L mon_calc_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rl.F mon_calc_stats_rl.F; fi if [ ! -L mon_calc_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_calc_stats_rs.F mon_calc_stats_rs.F; fi if [ ! -L mon_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_init.F mon_init.F; fi if [ ! -L monitor_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_ad.F monitor_ad.F; fi if [ ! -L monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor.F monitor.F; fi if [ ! -L monitor_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/monitor_g.F monitor_g.F; fi if [ ! -L mon_ke.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_ke.F mon_ke.F; fi if [ ! -L mon_out.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_out.F mon_out.F; fi if [ ! -L mon_printstats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rl.F mon_printstats_rl.F; fi if [ ! -L mon_printstats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_printstats_rs.F mon_printstats_rs.F; fi if [ ! -L mon_set_iounit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_iounit.F mon_set_iounit.F; fi if [ ! -L mon_set_pref.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_set_pref.F mon_set_pref.F; fi if [ ! -L mon_solution.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_solution.F mon_solution.F; fi if [ ! -L mon_stats_latbnd_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_latbnd_rl.F mon_stats_latbnd_rl.F; fi if [ ! -L mon_stats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rl.F mon_stats_rl.F; fi if [ ! -L mon_stats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_stats_rs.F mon_stats_rs.F; fi if [ ! -L mon_surfcor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_surfcor.F mon_surfcor.F; fi if [ ! -L mon_vort3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_vort3.F mon_vort3.F; fi if [ ! -L mon_writestats_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rl.F mon_writestats_rl.F; fi if [ ! -L mon_writestats_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/mon_writestats_rs.F mon_writestats_rs.F; fi if [ ! -L obcs_add_tides.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_add_tides.F obcs_add_tides.F; fi if [ ! -L obcs_adjust.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust.F obcs_adjust.F; fi if [ ! -L obcs_adjust_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_adjust_uvice.F obcs_adjust_uvice.F; fi if [ ! -L obcs_apply_eta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_eta.F obcs_apply_eta.F; fi if [ ! -L obcs_apply_ptracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ptracer.F obcs_apply_ptracer.F; fi if [ ! -L obcs_apply_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_r_star.F obcs_apply_r_star.F; fi if [ ! -L obcs_apply_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_seaice.F obcs_apply_seaice.F; fi if [ ! -L obcs_apply_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_surf_dr.F obcs_apply_surf_dr.F; fi if [ ! -L obcs_apply_ts.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_ts.F obcs_apply_ts.F; fi if [ ! -L obcs_apply_uv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uv.F obcs_apply_uv.F; fi if [ ! -L obcs_apply_uvice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_uvice.F obcs_apply_uvice.F; fi if [ ! -L obcs_apply_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_apply_w.F obcs_apply_w.F; fi if [ ! -L obcs_balance_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_balance_flow.F obcs_balance_flow.F; fi if [ ! -L obcs_calc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc.F obcs_calc.F; fi if [ ! -L obcs_calc_stevens.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_calc_stevens.F obcs_calc_stevens.F; fi if [ ! -L obcs_check_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check_depths.F obcs_check_depths.F; fi if [ ! -L obcs_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_check.F obcs_check.F; fi if [ ! -L obcs_copy_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_tracer.F obcs_copy_tracer.F; fi if [ ! -L obcs_copy_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_copy_uv_n.F obcs_copy_uv_n.F; fi if [ ! -L obcs_diag_balance.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_diag_balance.F obcs_diag_balance.F; fi if [ ! -L obcs_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exchanges.F obcs_exchanges.F; fi if [ ! -L obcs_exf_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_exf_load.F obcs_exf_load.F; fi if [ ! -L obcs_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_fields_load.F obcs_fields_load.F; fi if [ ! -L obcs_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_fixed.F obcs_init_fixed.F; fi if [ ! -L obcs_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_init_variables.F obcs_init_variables.F; fi if [ ! -L obcs_monitor.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_monitor.F obcs_monitor.F; fi if [ ! -L obcs_mon_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_mon_stats.F obcs_mon_stats.F; fi if [ ! -L obcs_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_output.F obcs_output.F; fi if [ ! -L obcs_prescribe_read.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_prescribe_read.F obcs_prescribe_read.F; fi if [ ! -L obcs_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_readparms.F obcs_readparms.F; fi if [ ! -L obcs_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_read_pickup.F obcs_read_pickup.F; fi if [ ! -L obcs_save_uv_n.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_save_uv_n.F obcs_save_uv_n.F; fi if [ ! -L obcs_seaice_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_seaice_sponge.F obcs_seaice_sponge.F; fi if [ ! -L obcs_set_connect.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_set_connect.F obcs_set_connect.F; fi if [ ! -L obcs_sponge.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_sponge.F obcs_sponge.F; fi if [ ! -L obcs_u1_adv_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_u1_adv_tracer.F obcs_u1_adv_tracer.F; fi if [ ! -L obcs_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_write_pickup.F obcs_write_pickup.F; fi if [ ! -L orlanski_east.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_east.F orlanski_east.F; fi if [ ! -L orlanski_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_init.F orlanski_init.F; fi if [ ! -L orlanski_north.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_north.F orlanski_north.F; fi if [ ! -L orlanski_south.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_south.F orlanski_south.F; fi if [ ! -L orlanski_west.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/orlanski_west.F orlanski_west.F; fi if [ ! -L get_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/get_write_global_fld.F get_write_global_fld.F; fi if [ ! -L read_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rl.F read_fld_xy_rl.F; fi if [ ! -L read_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xy_rs.F read_fld_xy_rs.F; fi if [ ! -L read_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rl.F read_fld_xyz_rl.F; fi if [ ! -L read_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_fld_xyz_rs.F read_fld_xyz_rs.F; fi if [ ! -L read_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rl.F read_glvec_rl.F; fi if [ ! -L read_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_glvec_rs.F read_glvec_rs.F; fi if [ ! -L read_mflds.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_mflds.F read_mflds.F; fi if [ ! -L read_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/read_rec.F read_rec.F; fi if [ ! -L rw_get_suffix.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/rw_get_suffix.F rw_get_suffix.F; fi if [ ! -L set_write_global_fld.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/set_write_global_fld.F set_write_global_fld.F; fi if [ ! -L write_fld_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rl.F write_fld_3d_rl.F; fi if [ ! -L write_fld_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_3d_rs.F write_fld_3d_rs.F; fi if [ ! -L write_fld_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rl.F write_fld_s3d_rl.F; fi if [ ! -L write_fld_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_s3d_rs.F write_fld_s3d_rs.F; fi if [ ! -L write_fld_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rl.F write_fld_xy_rl.F; fi if [ ! -L write_fld_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xy_rs.F write_fld_xy_rs.F; fi if [ ! -L write_fld_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rl.F write_fld_xyz_rl.F; fi if [ ! -L write_fld_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_fld_xyz_rs.F write_fld_xyz_rs.F; fi if [ ! -L write_glvec_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rl.F write_glvec_rl.F; fi if [ ! -L write_glvec_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_glvec_rs.F write_glvec_rs.F; fi if [ ! -L write_local_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rl.F write_local_rl.F; fi if [ ! -L write_local_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_local_rs.F write_local_rs.F; fi if [ ! -L write_rec.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/write_rec.F write_rec.F; fi if [ ! -L shelfice_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_check.F shelfice_check.F; fi if [ ! -L shelfice_cost_accumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_accumulate.F shelfice_cost_accumulate.F; fi if [ ! -L shelfice_cost_final.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_final.F shelfice_cost_final.F; fi if [ ! -L shelfice_cost_shifwflx.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_cost_shifwflx.F shelfice_cost_shifwflx.F; fi if [ ! -L shelfice_diagnostics_drag.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_diagnostics_drag.F shelfice_diagnostics_drag.F; fi if [ ! -L shelfice_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing.F shelfice_forcing.F; fi if [ ! -L shelfice_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_forcing_surf.F shelfice_forcing_surf.F; fi if [ ! -L shelfice_init_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_depths.F shelfice_init_depths.F; fi if [ ! -L shelfice_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_fixed.F shelfice_init_fixed.F; fi if [ ! -L shelfice_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_init_varia.F shelfice_init_varia.F; fi if [ ! -L shelfice_mask_seaice.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mask_seaice.F shelfice_mask_seaice.F; fi if [ ! -L shelfice_mnc_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_mnc_init.F shelfice_mnc_init.F; fi if [ ! -L shelfice_output.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_output.F shelfice_output.F; fi if [ ! -L shelfice_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_readparms.F shelfice_readparms.F; fi if [ ! -L shelfice_read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_read_pickup.F shelfice_read_pickup.F; fi if [ ! -L shelfice_remesh_calc_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_calc_w.F shelfice_remesh_calc_w.F; fi if [ ! -L shelfice_remesh_c_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_c_mask.F shelfice_remesh_c_mask.F; fi if [ ! -L shelfice_remeshing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remeshing.F shelfice_remeshing.F; fi if [ ! -L shelfice_remesh_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_state.F shelfice_remesh_state.F; fi if [ ! -L shelfice_remesh_uv_mask.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_remesh_uv_mask.F shelfice_remesh_uv_mask.F; fi if [ ! -L shelfice_step_icemass.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_step_icemass.F shelfice_step_icemass.F; fi if [ ! -L shelfice_thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_thermodynamics.F shelfice_thermodynamics.F; fi if [ ! -L shelfice_u_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_u_drag_coeff.F shelfice_u_drag_coeff.F; fi if [ ! -L shelfice_v_drag_coeff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_v_drag_coeff.F shelfice_v_drag_coeff.F; fi if [ ! -L shelfice_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_write_pickup.F shelfice_write_pickup.F; fi if [ ! -L timeave_cumul_1k1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1k1t.F timeave_cumul_1k1t.F; fi if [ ! -L timeave_cumul_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1t.F timeave_cumul_1t.F; fi if [ ! -L timeave_cumul_1vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_1vfc.F timeave_cumul_1vfc.F; fi if [ ! -L timeave_cumul_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2v.F timeave_cumul_2v.F; fi if [ ! -L timeave_cumul_2vfc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_2vfc.F timeave_cumul_2vfc.F; fi if [ ! -L timeave_cumulate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumulate.F timeave_cumulate.F; fi if [ ! -L timeave_cumul_dif_1t.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_cumul_dif_1t.F timeave_cumul_dif_1t.F; fi if [ ! -L timeave_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_init_fixed.F timeave_init_fixed.F; fi if [ ! -L timeave_norma_2v.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_norma_2v.F timeave_norma_2v.F; fi if [ ! -L timeave_normalize.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_normalize.F timeave_normalize.F; fi if [ ! -L timeave_reset.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_reset.F timeave_reset.F; fi if [ ! -L timeave_statvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statvars.F timeave_statvars.F; fi if [ ! -L timeave_statv_write.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_statv_write.F timeave_statv_write.F; fi if [ ! -L timeave_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/timeave_surf_flux.F timeave_surf_flux.F; fi if [ ! -L all_proc_die.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/all_proc_die.F all_proc_die.F; fi if [ ! -L bar2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar2.F bar2.F; fi if [ ! -L bar_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/bar_check.F bar_check.F; fi if [ ! -L barrier.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/barrier.F barrier.F; fi if [ ! -L check_threads.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/check_threads.F check_threads.F; fi if [ ! -L comm_stats.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/comm_stats.F comm_stats.F; fi if [ ! -L cumulsum_z_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/cumulsum_z_tile.F cumulsum_z_tile.F; fi if [ ! -L different_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/different_multiple.F different_multiple.F; fi if [ ! -L diff_phase_multiple.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/diff_phase_multiple.F diff_phase_multiple.F; fi if [ ! -L eeboot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeboot.F eeboot.F; fi if [ ! -L eedata_example.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eedata_example.F eedata_example.F; fi if [ ! -L eeintro_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeintro_msg.F eeintro_msg.F; fi if [ ! -L eeset_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eeset_parms.F eeset_parms.F; fi if [ ! -L eewrite_eeenv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/eewrite_eeenv.F eewrite_eeenv.F; fi if [ ! -L exch0_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r4.F exch0_r4.F; fi if [ ! -L exch0_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_r8.F exch0_r8.F; fi if [ ! -L exch0_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rl.F exch0_rl.F; fi if [ ! -L exch0_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch0_rs.F exch0_rs.F; fi if [ ! -L exch1_bg_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r4_cube.F exch1_bg_r4_cube.F; fi if [ ! -L exch1_bg_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_r8_cube.F exch1_bg_r8_cube.F; fi if [ ! -L exch1_bg_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rl_cube.F exch1_bg_rl_cube.F; fi if [ ! -L exch1_bg_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_bg_rs_cube.F exch1_bg_rs_cube.F; fi if [ ! -L exch1_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4_cube.F exch1_r4_cube.F; fi if [ ! -L exch1_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r4.F exch1_r4.F; fi if [ ! -L exch1_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8_cube.F exch1_r8_cube.F; fi if [ ! -L exch1_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_r8.F exch1_r8.F; fi if [ ! -L exch1_rl_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_ad.F exch1_rl_ad.F; fi if [ ! -L exch1_rl_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube_ad.F exch1_rl_cube_ad.F; fi if [ ! -L exch1_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl_cube.F exch1_rl_cube.F; fi if [ ! -L exch1_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rl.F exch1_rl.F; fi if [ ! -L exch1_rs_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_ad.F exch1_rs_ad.F; fi if [ ! -L exch1_rs_cube_ad.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube_ad.F exch1_rs_cube_ad.F; fi if [ ! -L exch1_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs_cube.F exch1_rs_cube.F; fi if [ ! -L exch1_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_rs.F exch1_rs.F; fi if [ ! -L exch1_uv_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r4_cube.F exch1_uv_r4_cube.F; fi if [ ! -L exch1_uv_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_r8_cube.F exch1_uv_r8_cube.F; fi if [ ! -L exch1_uv_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rl_cube.F exch1_uv_rl_cube.F; fi if [ ! -L exch1_uv_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_uv_rs_cube.F exch1_uv_rs_cube.F; fi if [ ! -L exch1_z_r4_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r4_cube.F exch1_z_r4_cube.F; fi if [ ! -L exch1_z_r8_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_r8_cube.F exch1_z_r8_cube.F; fi if [ ! -L exch1_z_rl_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rl_cube.F exch1_z_rl_cube.F; fi if [ ! -L exch1_z_rs_cube.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch1_z_rs_cube.F exch1_z_rs_cube.F; fi if [ ! -L exch_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r4.F exch_3d_r4.F; fi if [ ! -L exch_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_r8.F exch_3d_r8.F; fi if [ ! -L exch_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rl.F exch_3d_rl.F; fi if [ ! -L exch_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_3d_rs.F exch_3d_rs.F; fi if [ ! -L exch_cycle_ebl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_cycle_ebl.F exch_cycle_ebl.F; fi if [ ! -L exch_init.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_init.F exch_init.F; fi if [ ! -L exch_r4_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_x.F exch_r4_recv_get_x.F; fi if [ ! -L exch_r4_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_recv_get_y.F exch_r4_recv_get_y.F; fi if [ ! -L exch_r4_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_x.F exch_r4_send_put_x.F; fi if [ ! -L exch_r4_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r4_send_put_y.F exch_r4_send_put_y.F; fi if [ ! -L exch_r8_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_x.F exch_r8_recv_get_x.F; fi if [ ! -L exch_r8_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_recv_get_y.F exch_r8_recv_get_y.F; fi if [ ! -L exch_r8_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_x.F exch_r8_send_put_x.F; fi if [ ! -L exch_r8_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_r8_send_put_y.F exch_r8_send_put_y.F; fi if [ ! -L exch_rl_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_x.F exch_rl_recv_get_x.F; fi if [ ! -L exch_rl_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_recv_get_y.F exch_rl_recv_get_y.F; fi if [ ! -L exch_rl_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_x.F exch_rl_send_put_x.F; fi if [ ! -L exch_rl_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rl_send_put_y.F exch_rl_send_put_y.F; fi if [ ! -L exch_rs_recv_get_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_x.F exch_rs_recv_get_x.F; fi if [ ! -L exch_rs_recv_get_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_recv_get_y.F exch_rs_recv_get_y.F; fi if [ ! -L exch_rs_send_put_x.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_x.F exch_rs_send_put_x.F; fi if [ ! -L exch_rs_send_put_y.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_rs_send_put_y.F exch_rs_send_put_y.F; fi if [ ! -L exch_s3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r4.F exch_s3d_r4.F; fi if [ ! -L exch_s3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_r8.F exch_s3d_r8.F; fi if [ ! -L exch_s3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rl.F exch_s3d_rl.F; fi if [ ! -L exch_s3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_s3d_rs.F exch_s3d_rs.F; fi if [ ! -L exch_sm_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r4.F exch_sm_3d_r4.F; fi if [ ! -L exch_sm_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_r8.F exch_sm_3d_r8.F; fi if [ ! -L exch_sm_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rl.F exch_sm_3d_rl.F; fi if [ ! -L exch_sm_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_sm_3d_rs.F exch_sm_3d_rs.F; fi if [ ! -L exch_uv_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r4.F exch_uv_3d_r4.F; fi if [ ! -L exch_uv_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_r8.F exch_uv_3d_r8.F; fi if [ ! -L exch_uv_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rl.F exch_uv_3d_rl.F; fi if [ ! -L exch_uv_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_3d_rs.F exch_uv_3d_rs.F; fi if [ ! -L exch_uv_agrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r4.F; fi if [ ! -L exch_uv_agrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_r8.F; fi if [ ! -L exch_uv_agrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rl.F; fi if [ ! -L exch_uv_agrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_agrid_3d_rs.F exch_uv_agrid_3d_rs.F; fi if [ ! -L exch_uv_bgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r4.F; fi if [ ! -L exch_uv_bgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_r8.F; fi if [ ! -L exch_uv_bgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rl.F; fi if [ ! -L exch_uv_bgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_bgrid_3d_rs.F exch_uv_bgrid_3d_rs.F; fi if [ ! -L exch_uv_dgrid_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r4.F; fi if [ ! -L exch_uv_dgrid_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_r8.F; fi if [ ! -L exch_uv_dgrid_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rl.F; fi if [ ! -L exch_uv_dgrid_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_dgrid_3d_rs.F exch_uv_dgrid_3d_rs.F; fi if [ ! -L exch_uv_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r4.F exch_uv_xy_r4.F; fi if [ ! -L exch_uv_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_r8.F exch_uv_xy_r8.F; fi if [ ! -L exch_uv_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rl.F exch_uv_xy_rl.F; fi if [ ! -L exch_uv_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xy_rs.F exch_uv_xy_rs.F; fi if [ ! -L exch_uv_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r4.F exch_uv_xyz_r4.F; fi if [ ! -L exch_uv_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_r8.F exch_uv_xyz_r8.F; fi if [ ! -L exch_uv_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rl.F exch_uv_xyz_rl.F; fi if [ ! -L exch_uv_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_uv_xyz_rs.F exch_uv_xyz_rs.F; fi if [ ! -L exch_xy_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r4.F exch_xy_r4.F; fi if [ ! -L exch_xy_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_r8.F exch_xy_r8.F; fi if [ ! -L exch_xy_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rl.F exch_xy_rl.F; fi if [ ! -L exch_xy_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xy_rs.F exch_xy_rs.F; fi if [ ! -L exch_xyz_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r4.F exch_xyz_r4.F; fi if [ ! -L exch_xyz_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_r8.F exch_xyz_r8.F; fi if [ ! -L exch_xyz_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rl.F exch_xyz_rl.F; fi if [ ! -L exch_xyz_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_xyz_rs.F exch_xyz_rs.F; fi if [ ! -L exch_z_3d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r4.F exch_z_3d_r4.F; fi if [ ! -L exch_z_3d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_r8.F exch_z_3d_r8.F; fi if [ ! -L exch_z_3d_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rl.F exch_z_3d_rl.F; fi if [ ! -L exch_z_3d_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/exch_z_3d_rs.F exch_z_3d_rs.F; fi if [ ! -L fill_cs_corner_ag_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_ag_rl.F fill_cs_corner_ag_rl.F; fi if [ ! -L fill_cs_corner_tr_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_tr_rl.F fill_cs_corner_tr_rl.F; fi if [ ! -L fill_cs_corner_uv_rl.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rl.F fill_cs_corner_uv_rl.F; fi if [ ! -L fill_cs_corner_uv_rs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fill_cs_corner_uv_rs.F fill_cs_corner_uv_rs.F; fi if [ ! -L fool_the_compiler.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/fool_the_compiler.F fool_the_compiler.F; fi if [ ! -L gather_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r4.F gather_2d_r4.F; fi if [ ! -L gather_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_r8.F gather_2d_r8.F; fi if [ ! -L gather_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r4.F gather_2d_wh_r4.F; fi if [ ! -L gather_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_2d_wh_r8.F gather_2d_wh_r8.F; fi if [ ! -L gather_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r4.F gather_vec_r4.F; fi if [ ! -L gather_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_vec_r8.F gather_vec_r8.F; fi if [ ! -L gather_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_xz.F gather_xz.F; fi if [ ! -L gather_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gather_yz.F gather_yz.F; fi if [ ! -L get_periodic_interval.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/get_periodic_interval.F get_periodic_interval.F; fi if [ ! -L global_max.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_max.F global_max.F; fi if [ ! -L global_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum.F global_sum.F; fi if [ ! -L global_sum_singlecpu.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_singlecpu.F global_sum_singlecpu.F; fi if [ ! -L global_sum_tile.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_sum_tile.F global_sum_tile.F; fi if [ ! -L global_vec_sum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/global_vec_sum.F global_vec_sum.F; fi if [ ! -L gsum.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsum.F gsum.F; fi if [ ! -L ini_communication_patterns.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_communication_patterns.F ini_communication_patterns.F; fi if [ ! -L ini_procs.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_procs.F ini_procs.F; fi if [ ! -L ini_threading_environment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ini_threading_environment.F ini_threading_environment.F; fi if [ ! -L lef_zero.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/lef_zero.F lef_zero.F; fi if [ ! -L main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/main.F main.F; fi if [ ! -L master_cpu_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_io.F master_cpu_io.F; fi if [ ! -L master_cpu_thread.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/master_cpu_thread.F master_cpu_thread.F; fi if [ ! -L mds_byteswapi4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapi4.F mds_byteswapi4.F; fi if [ ! -L mds_byteswapr4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr4.F mds_byteswapr4.F; fi if [ ! -L mds_byteswapr8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_byteswapr8.F mds_byteswapr8.F; fi if [ ! -L mdsfindunit.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mdsfindunit.F mdsfindunit.F; fi if [ ! -L mds_flush.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_flush.F mds_flush.F; fi if [ ! -L mds_reclen.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/mds_reclen.F mds_reclen.F; fi if [ ! -L memsync.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/memsync.F memsync.F; fi if [ ! -L nml_change_syntax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_change_syntax.F nml_change_syntax.F; fi if [ ! -L nml_set_terminator.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/nml_set_terminator.F nml_set_terminator.F; fi if [ ! -L open_copy_data_file.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/open_copy_data_file.F open_copy_data_file.F; fi if [ ! -L print.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/print.F print.F; fi if [ ! -L reset_halo.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/reset_halo.F reset_halo.F; fi if [ ! -L scatter_2d_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r4.F scatter_2d_r4.F; fi if [ ! -L scatter_2d_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_r8.F scatter_2d_r8.F; fi if [ ! -L scatter_2d_wh_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r4.F scatter_2d_wh_r4.F; fi if [ ! -L scatter_2d_wh_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_2d_wh_r8.F scatter_2d_wh_r8.F; fi if [ ! -L scatter_vec_r4.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r4.F scatter_vec_r4.F; fi if [ ! -L scatter_vec_r8.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_vec_r8.F scatter_vec_r8.F; fi if [ ! -L scatter_xz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_xz.F scatter_xz.F; fi if [ ! -L scatter_yz.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/scatter_yz.F scatter_yz.F; fi if [ ! -L stop_if_error.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/stop_if_error.F stop_if_error.F; fi if [ ! -L timers.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timers.F timers.F; fi if [ ! -L utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/utils.F utils.F; fi if [ ! -L write_utils.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/write_utils.F write_utils.F; fi if [ ! -L adams_bashforth2.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth2.F adams_bashforth2.F; fi if [ ! -L adams_bashforth3.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/adams_bashforth3.F adams_bashforth3.F; fi if [ ! -L add_walls2masks.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/add_walls2masks.F add_walls2masks.F; fi if [ ! -L apply_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/apply_forcing.F apply_forcing.F; fi if [ ! -L calc_3d_diffusivity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_3d_diffusivity.F calc_3d_diffusivity.F; fi if [ ! -L calc_adv_flow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_adv_flow.F calc_adv_flow.F; fi if [ ! -L calc_div_ghat.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_div_ghat.F calc_div_ghat.F; fi if [ ! -L calc_eddy_stress.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_eddy_stress.F calc_eddy_stress.F; fi if [ ! -L calc_grad_phi_fv.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_fv.F calc_grad_phi_fv.F; fi if [ ! -L calc_grad_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_hyd.F calc_grad_phi_hyd.F; fi if [ ! -L calc_grad_phi_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grad_phi_surf.F calc_grad_phi_surf.F; fi if [ ! -L calc_grid_angles.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_grid_angles.F calc_grid_angles.F; fi if [ ! -L calc_gw.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_gw.F calc_gw.F; fi if [ ! -L calc_ivdc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_ivdc.F calc_ivdc.F; fi if [ ! -L calc_oce_mxlayer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_oce_mxlayer.F calc_oce_mxlayer.F; fi if [ ! -L calc_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_phi_hyd.F calc_phi_hyd.F; fi if [ ! -L calc_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_r_star.F calc_r_star.F; fi if [ ! -L calc_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_surf_dr.F calc_surf_dr.F; fi if [ ! -L calc_viscosity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_viscosity.F calc_viscosity.F; fi if [ ! -L calc_wsurf_tr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/calc_wsurf_tr.F calc_wsurf_tr.F; fi if [ ! -L cg2d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_ex0.F cg2d_ex0.F; fi if [ ! -L cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d.F cg2d.F; fi if [ ! -L cg2d_nsa.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_nsa.F cg2d_nsa.F; fi if [ ! -L cg2d_sr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg2d_sr.F cg2d_sr.F; fi if [ ! -L cg3d_ex0.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d_ex0.F cg3d_ex0.F; fi if [ ! -L cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cg3d.F cg3d.F; fi if [ ! -L check_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/check_pickup.F check_pickup.F; fi if [ ! -L config_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_check.F config_check.F; fi if [ ! -L config_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/config_summary.F config_summary.F; fi if [ ! -L convective_adjustment.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment.F convective_adjustment.F; fi if [ ! -L convective_adjustment_ini.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_adjustment_ini.F convective_adjustment_ini.F; fi if [ ! -L convectively_mixtracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convectively_mixtracer.F convectively_mixtracer.F; fi if [ ! -L convective_weights.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/convective_weights.F convective_weights.F; fi if [ ! -L correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/correction_step.F correction_step.F; fi if [ ! -L cycle_ab_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_ab_tracer.F cycle_ab_tracer.F; fi if [ ! -L cycle_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/cycle_tracer.F cycle_tracer.F; fi if [ ! -L diags_oceanic_surf_flux.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_oceanic_surf_flux.F diags_oceanic_surf_flux.F; fi if [ ! -L diags_phi_hyd.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_hyd.F diags_phi_hyd.F; fi if [ ! -L diags_phi_rlow.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_phi_rlow.F diags_phi_rlow.F; fi if [ ! -L diags_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_rho.F diags_rho.F; fi if [ ! -L diags_sound_speed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/diags_sound_speed.F diags_sound_speed.F; fi if [ ! -L do_atmospheric_phys.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_atmospheric_phys.F do_atmospheric_phys.F; fi if [ ! -L do_fields_blocking_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_fields_blocking_exchanges.F do_fields_blocking_exchanges.F; fi if [ ! -L do_stagger_fields_exchanges.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_stagger_fields_exchanges.F do_stagger_fields_exchanges.F; fi if [ ! -L do_statevars_diags.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_diags.F do_statevars_diags.F; fi if [ ! -L do_statevars_tave.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_statevars_tave.F do_statevars_tave.F; fi if [ ! -L do_the_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_the_model_io.F do_the_model_io.F; fi if [ ! -L do_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/do_write_pickup.F do_write_pickup.F; fi if [ ! -L dynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/dynamics.F dynamics.F; fi if [ ! -L external_fields_load.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_fields_load.F external_fields_load.F; fi if [ ! -L external_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing.F external_forcing.F; fi if [ ! -L external_forcing_surf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/external_forcing_surf.F external_forcing_surf.F; fi if [ ! -L find_alpha.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_alpha.F find_alpha.F; fi if [ ! -L find_hyd_press_1d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_hyd_press_1d.F find_hyd_press_1d.F; fi if [ ! -L find_rho.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/find_rho.F find_rho.F; fi if [ ! -L forcing_surf_relax.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forcing_surf_relax.F forcing_surf_relax.F; fi if [ ! -L forward_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/forward_step.F forward_step.F; fi if [ ! -L freesurf_rescale_g.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freesurf_rescale_g.F freesurf_rescale_g.F; fi if [ ! -L freeze_surface.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/freeze_surface.F freeze_surface.F; fi if [ ! -L grad_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/grad_sigma.F grad_sigma.F; fi if [ ! -L gsw_teos10.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/gsw_teos10.F gsw_teos10.F; fi if [ ! -L impldiff.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/impldiff.F impldiff.F; fi if [ ! -L ini_cartesian_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cartesian_grid.F ini_cartesian_grid.F; fi if [ ! -L ini_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg2d.F ini_cg2d.F; fi if [ ! -L ini_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cg3d.F ini_cg3d.F; fi if [ ! -L ini_cori.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cori.F ini_cori.F; fi if [ ! -L ini_curvilinear_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_curvilinear_grid.F ini_curvilinear_grid.F; fi if [ ! -L ini_cylinder_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_cylinder_grid.F ini_cylinder_grid.F; fi if [ ! -L ini_depths.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_depths.F ini_depths.F; fi if [ ! -L ini_dynvars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_dynvars.F ini_dynvars.F; fi if [ ! -L ini_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_eos.F ini_eos.F; fi if [ ! -L ini_ffields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_ffields.F ini_ffields.F; fi if [ ! -L ini_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_fields.F ini_fields.F; fi if [ ! -L ini_forcing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_forcing.F ini_forcing.F; fi if [ ! -L ini_global_domain.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_global_domain.F ini_global_domain.F; fi if [ ! -L ini_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_grid.F ini_grid.F; fi if [ ! -L ini_linear_phisurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_linear_phisurf.F ini_linear_phisurf.F; fi if [ ! -L ini_local_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_local_grid.F ini_local_grid.F; fi if [ ! -L ini_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_masks_etc.F ini_masks_etc.F; fi if [ ! -L ini_mixing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mixing.F ini_mixing.F; fi if [ ! -L ini_mnc_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_mnc_vars.F ini_mnc_vars.F; fi if [ ! -L ini_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_model_io.F ini_model_io.F; fi if [ ! -L ini_nh_fields.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_fields.F ini_nh_fields.F; fi if [ ! -L ini_nh_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nh_vars.F ini_nh_vars.F; fi if [ ! -L ini_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_nlfs_vars.F ini_nlfs_vars.F; fi if [ ! -L ini_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_parms.F ini_parms.F; fi if [ ! -L ini_p_ground.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_p_ground.F ini_p_ground.F; fi if [ ! -L ini_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_pressure.F ini_pressure.F; fi if [ ! -L ini_psurf.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_psurf.F ini_psurf.F; fi if [ ! -L ini_salt.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_salt.F ini_salt.F; fi if [ ! -L ini_sigma_hfac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_sigma_hfac.F ini_sigma_hfac.F; fi if [ ! -L ini_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_spherical_polar_grid.F ini_spherical_polar_grid.F; fi if [ ! -L ini_theta.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_theta.F ini_theta.F; fi if [ ! -L initialise_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_fixed.F initialise_fixed.F; fi if [ ! -L initialise_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/initialise_varia.F initialise_varia.F; fi if [ ! -L ini_vel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vel.F ini_vel.F; fi if [ ! -L ini_vertical_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/ini_vertical_grid.F ini_vertical_grid.F; fi if [ ! -L integrate_for_w.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integrate_for_w.F integrate_for_w.F; fi if [ ! -L integr_continuity.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/integr_continuity.F integr_continuity.F; fi if [ ! -L load_fields_driver.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_fields_driver.F load_fields_driver.F; fi if [ ! -L load_grid_spacing.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_grid_spacing.F load_grid_spacing.F; fi if [ ! -L load_ref_files.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/load_ref_files.F load_ref_files.F; fi if [ ! -L main_do_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/main_do_loop.F main_do_loop.F; fi if [ ! -L momentum_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/momentum_correction_step.F momentum_correction_step.F; fi if [ ! -L packages_boot.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_boot.F packages_boot.F; fi if [ ! -L packages_check.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_check.F packages_check.F; fi if [ ! -L packages_error_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_error_msg.F packages_error_msg.F; fi if [ ! -L packages_init_fixed.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_fixed.F packages_init_fixed.F; fi if [ ! -L packages_init_variables.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_init_variables.F packages_init_variables.F; fi if [ ! -L packages_print_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_print_msg.F packages_print_msg.F; fi if [ ! -L packages_readparms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_readparms.F packages_readparms.F; fi if [ ! -L packages_unused_msg.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_unused_msg.F packages_unused_msg.F; fi if [ ! -L packages_write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/packages_write_pickup.F packages_write_pickup.F; fi if [ ! -L plot_field.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/plot_field.F plot_field.F; fi if [ ! -L port_rand.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/port_rand.F port_rand.F; fi if [ ! -L post_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/post_cg3d.F post_cg3d.F; fi if [ ! -L pre_cg3d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pre_cg3d.F pre_cg3d.F; fi if [ ! -L pressure_for_eos.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/pressure_for_eos.F pressure_for_eos.F; fi if [ ! -L read_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/read_pickup.F read_pickup.F; fi if [ ! -L remove_mean.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/remove_mean.F remove_mean.F; fi if [ ! -L reset_nlfs_vars.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/reset_nlfs_vars.F reset_nlfs_vars.F; fi if [ ! -L rotate_spherical_polar_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_spherical_polar_grid.F rotate_spherical_polar_grid.F; fi if [ ! -L rotate_uv2en.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/rotate_uv2en.F rotate_uv2en.F; fi if [ ! -L salt_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/salt_integrate.F salt_integrate.F; fi if [ ! -L seawater.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/seawater.F seawater.F; fi if [ ! -L set_defaults.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_defaults.F set_defaults.F; fi if [ ! -L set_grid_factors.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_grid_factors.F set_grid_factors.F; fi if [ ! -L set_parms.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_parms.F set_parms.F; fi if [ ! -L set_ref_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/set_ref_state.F set_ref_state.F; fi if [ ! -L solve_for_pressure.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_for_pressure.F solve_for_pressure.F; fi if [ ! -L solve_pentadiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_pentadiagonal.F solve_pentadiagonal.F; fi if [ ! -L solve_tridiagonal.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_tridiagonal.F solve_tridiagonal.F; fi if [ ! -L solve_uv_tridiago.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/solve_uv_tridiago.F solve_uv_tridiago.F; fi if [ ! -L state_summary.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/state_summary.F state_summary.F; fi if [ ! -L swfrac.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/swfrac.F swfrac.F; fi if [ ! -L taueddy_init_varia.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_init_varia.F taueddy_init_varia.F; fi if [ ! -L taueddy_tendency_apply.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/taueddy_tendency_apply.F taueddy_tendency_apply.F; fi if [ ! -L temp_integrate.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/temp_integrate.F temp_integrate.F; fi if [ ! -L the_main_loop.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_main_loop.F the_main_loop.F; fi if [ ! -L the_model_main.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/the_model_main.F the_model_main.F; fi if [ ! -L thermodynamics.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/thermodynamics.F thermodynamics.F; fi if [ ! -L timestep.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep.F timestep.F; fi if [ ! -L timestep_tracer.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_tracer.F timestep_tracer.F; fi if [ ! -L timestep_wvel.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/timestep_wvel.F timestep_wvel.F; fi if [ ! -L tracers_correction_step.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_correction_step.F tracers_correction_step.F; fi if [ ! -L tracers_iigw_correction.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/tracers_iigw_correction.F tracers_iigw_correction.F; fi if [ ! -L turnoff_model_io.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/turnoff_model_io.F turnoff_model_io.F; fi if [ ! -L update_cg2d.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_cg2d.F update_cg2d.F; fi if [ ! -L update_etah.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etah.F update_etah.F; fi if [ ! -L update_etaws.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_etaws.F update_etaws.F; fi if [ ! -L update_masks_etc.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_masks_etc.F update_masks_etc.F; fi if [ ! -L update_r_star.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_r_star.F update_r_star.F; fi if [ ! -L update_sigma.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_sigma.F update_sigma.F; fi if [ ! -L update_surf_dr.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/update_surf_dr.F update_surf_dr.F; fi if [ ! -L write_grid.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_grid.F write_grid.F; fi if [ ! -L write_pickup.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_pickup.F write_pickup.F; fi if [ ! -L write_state.F ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/src/write_state.F write_state.F; fi if [ ! -L gsl_ieee_env.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/gsl_ieee_env.c gsl_ieee_env.c; fi if [ ! -L ptwrapper.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/ptwrapper.c ptwrapper.c; fi if [ ! -L setdir.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setdir.c setdir.c; fi if [ ! -L setrlstk.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/setrlstk.c setrlstk.c; fi if [ ! -L sigreg.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/sigreg.c sigreg.c; fi if [ ! -L tim.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/tim.c tim.c; fi if [ ! -L timer_stats.c ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/src/timer_stats.c timer_stats.c; fi if [ ! -L CPP_EEOPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/CPP_EEOPTIONS.h CPP_EEOPTIONS.h; fi if [ ! -L SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/code/SIZE.h SIZE.h; fi if [ ! -L DEBUG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/debug/DEBUG_OPTIONS.h DEBUG_OPTIONS.h; fi if [ ! -L DIAGNOSTICS_CALC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_CALC.h DIAGNOSTICS_CALC.h; fi if [ ! -L DIAGNOSTICS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS.h DIAGNOSTICS.h; fi if [ ! -L DIAGNOSTICS_SIZE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGNOSTICS_SIZE.h DIAGNOSTICS_SIZE.h; fi if [ ! -L DIAG_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAG_OPTIONS.h DIAG_OPTIONS.h; fi if [ ! -L DIAGSTATS_REGIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/diagnostics/DIAGSTATS_REGIONS.h DIAGSTATS_REGIONS.h; fi if [ ! -L gad_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev1_dir.h gad_ad_check_lev1_dir.h; fi if [ ! -L gad_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev2_dir.h gad_ad_check_lev2_dir.h; fi if [ ! -L gad_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev3_dir.h gad_ad_check_lev3_dir.h; fi if [ ! -L gad_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/gad_ad_check_lev4_dir.h gad_ad_check_lev4_dir.h; fi if [ ! -L GAD_FLUX_LIMITER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_FLUX_LIMITER.h GAD_FLUX_LIMITER.h; fi if [ ! -L GAD.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD.h GAD.h; fi if [ ! -L GAD_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_OPTIONS.h GAD_OPTIONS.h; fi if [ ! -L GAD_SOM_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/generic_advdiff/GAD_SOM_VARS.h GAD_SOM_VARS.h; fi if [ ! -L MDSIO_BUFF_3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_3D.h MDSIO_BUFF_3D.h; fi if [ ! -L MDSIO_BUFF_WH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_BUFF_WH.h MDSIO_BUFF_WH.h; fi if [ ! -L MDSIO_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mdsio/MDSIO_OPTIONS.h MDSIO_OPTIONS.h; fi if [ ! -L MOM_COMMON_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_COMMON_OPTIONS.h MOM_COMMON_OPTIONS.h; fi if [ ! -L MOM_VISC.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_common/MOM_VISC.h MOM_VISC.h; fi if [ ! -L MOM_FLUXFORM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM.h MOM_FLUXFORM.h; fi if [ ! -L MOM_FLUXFORM_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_fluxform/MOM_FLUXFORM_OPTIONS.h MOM_FLUXFORM_OPTIONS.h; fi if [ ! -L MOM_VECINV_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/mom_vecinv/MOM_VECINV_OPTIONS.h MOM_VECINV_OPTIONS.h; fi if [ ! -L MONITOR.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR.h MONITOR.h; fi if [ ! -L MONITOR_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/monitor/MONITOR_OPTIONS.h MONITOR_OPTIONS.h; fi if [ ! -L obcs_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev1_dir.h obcs_ad_check_lev1_dir.h; fi if [ ! -L obcs_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev2_dir.h obcs_ad_check_lev2_dir.h; fi if [ ! -L obcs_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev3_dir.h obcs_ad_check_lev3_dir.h; fi if [ ! -L obcs_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/obcs_ad_check_lev4_dir.h obcs_ad_check_lev4_dir.h; fi if [ ! -L OBCS_FIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_FIELDS.h OBCS_FIELDS.h; fi if [ ! -L OBCS_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_GRID.h OBCS_GRID.h; fi if [ ! -L OBCS_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_OPTIONS.h OBCS_OPTIONS.h; fi if [ ! -L OBCS_PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PARAMS.h OBCS_PARAMS.h; fi if [ ! -L OBCS_PTRACERS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_PTRACERS.h OBCS_PTRACERS.h; fi if [ ! -L OBCS_SEAICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/OBCS_SEAICE.h OBCS_SEAICE.h; fi if [ ! -L ORLANSKI.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/obcs/ORLANSKI.h ORLANSKI.h; fi if [ ! -L RW_MFLDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_MFLDS.h RW_MFLDS.h; fi if [ ! -L RW_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/rw/RW_OPTIONS.h RW_OPTIONS.h; fi if [ ! -L shelfice_ad_check_lev1_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev1_dir.h shelfice_ad_check_lev1_dir.h; fi if [ ! -L shelfice_ad_check_lev2_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev2_dir.h shelfice_ad_check_lev2_dir.h; fi if [ ! -L shelfice_ad_check_lev3_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev3_dir.h shelfice_ad_check_lev3_dir.h; fi if [ ! -L shelfice_ad_check_lev4_dir.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/shelfice_ad_check_lev4_dir.h shelfice_ad_check_lev4_dir.h; fi if [ ! -L SHELFICE_COST.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_COST.h SHELFICE_COST.h; fi if [ ! -L SHELFICE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE.h SHELFICE.h; fi if [ ! -L SHELFICE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_OPTIONS.h SHELFICE_OPTIONS.h; fi if [ ! -L SHELFICE_TAVE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/shelfice/SHELFICE_TAVE.h SHELFICE_TAVE.h; fi if [ ! -L TIMEAVE_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_OPTIONS.h TIMEAVE_OPTIONS.h; fi if [ ! -L TIMEAVE_STATV.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/pkg/timeave/TIMEAVE_STATV.h TIMEAVE_STATV.h; fi if [ ! -L cmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_c.h cmumps_c.h; fi if [ ! -L cmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_root.h cmumps_root.h; fi if [ ! -L cmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/cmumps_struc.h cmumps_struc.h; fi if [ ! -L dmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_c.h dmumps_c.h; fi if [ ! -L dmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_root.h dmumps_root.h; fi if [ ! -L dmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/dmumps_struc.h dmumps_struc.h; fi if [ ! -L gklib_defs.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_defs.h gklib_defs.h; fi if [ ! -L gklib_rename.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_rename.h gklib_rename.h; fi if [ ! -L gklib_tls.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/gklib_tls.h gklib_tls.h; fi if [ ! -L metis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/metis.h metis.h; fi if [ ! -L mpicxx.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpicxx.h mpicxx.h; fi if [ ! -L mpif.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpif.h mpif.h; fi if [ ! -L mpi.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi.h mpi.h; fi if [ ! -L mpiof.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpiof.h mpiof.h; fi if [ ! -L mpio.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpio.h mpio.h; fi if [ ! -L mpi_proto.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mpi_proto.h mpi_proto.h; fi if [ ! -L mumps_compat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_compat.h mumps_compat.h; fi if [ ! -L mumps_c_types.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_c_types.h mumps_c_types.h; fi if [ ! -L mumps_int_def.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/mumps_int_def.h mumps_int_def.h; fi if [ ! -L parmetis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/parmetis.h parmetis.h; fi if [ ! -L petscao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscao.h petscao.h; fi if [ ! -L petscbag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbag.h petscbag.h; fi if [ ! -L petscblaslapack.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack.h petscblaslapack.h; fi if [ ! -L petscblaslapack_mangle.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscblaslapack_mangle.h petscblaslapack_mangle.h; fi if [ ! -L petscbm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbm.h petscbm.h; fi if [ ! -L petscbt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscbt.h petscbt.h; fi if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi if [ ! -L petscctable.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscctable.h petscctable.h; fi if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi if [ ! -L petscdmadaptortypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptortypes.h petscdmadaptortypes.h; fi if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi if [ ! -L petscsnestypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnestypes.h petscsnestypes.h; fi if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi if [ ! -L petsctao_deprecations.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao_deprecations.h petsctao_deprecations.h; fi if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi Creating FC_NAMEMANGLE.h ... echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h Creating BUILD_INFO.h ... echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h echo "#define THISDATE 'Tue Jul 22 01:10:23 AM PDT 2025'" >> BUILD_INFO.h echo "#define THISHOST 'Debian-12-VM'" >> BUILD_INFO.h make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build' /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/12/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F Appending dependencies to Makefile /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile WARNING: f90mkdepend: no source file found for module `petscdtbinomial()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `seterra()` WARNING: f90mkdepend: no source file found for module `petsccalla()`. WARNING: f90mkdepend: no source file found for module `chkmema` WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()` WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser` WARNING: f90mkdepend: no source file found for module this WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()` WARNING: f90mkdepend: no source file found for module `mpiu_sf_node` WARNING: f90mkdepend: no source file found for module `petsc_null_integer` WARNING: f90mkdepend: no source file found for module `petsc_unlimited_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide_integer` WARNING: f90mkdepend: no source file found for module `petsc_determine_integer` WARNING: f90mkdepend: no source file found for module `petsc_decide` WARNING: f90mkdepend: no source file found for module `petsc_current_integer` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscintmulterror()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module `petscint64mult()` WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()` WARNING: f90mkdepend: no source file found for module the WARNING: f90mkdepend: no source file found for module `petscclassidregister()` WARNING: f90mkdepend: no source file found for module `petsccount_fmt` WARNING: f90mkdepend: no source file found for module of WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()` rm -f makedepend.out [41;37m step #6: RunUncoupledMITgcm [0m Year: 0 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.083333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.16667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.25 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.33333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.41667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.5 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.58333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.66667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.75 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.83333 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 0.91667 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END Year: 1 STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END STOP NORMAL END [41;37m step #7: CreateMesh [0m Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0) saving model as: Models/IceOcean.CreateMesh [41;37m step #8: MeshGeometry [0m saving model as: Models/IceOcean.MeshGeometry [41;37m step #9: ParameterizeIce [0m saving model as: Models/IceOcean.ParameterizeIce [41;37m step #10: RunUncoupledISSM [0m checking model consistency marshalling file test4001.bin uploading input file and queuing script launching solution sequence on remote cluster Ice-sheet and Sea-level System Model (ISSM) version 4.24 (website: http://issm.jpl.nasa.gov forum: https://issm.ess.uci.edu/forum/) [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind and https://petsc.org/release/faq/ [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: Run with -malloc_debug to check if memory corruption is causing the crash. application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 loading results from cluster cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-07-22-2025-01-13-56-3250578//test4001.outbin': No such file or directory Error using loadresultsfromdisk ========================================================================= Binary file test4001.outbin not found This typically results from an error encountered during the simulation Please check for error messages above or in the outlog ========================================================================= Error in loadresultsfromcluster (line 50) md=loadresultsfromdisk(md,[md.miscellaneous.name '.outbin']); Error in solve (line 180) md=loadresultsfromcluster(md); Error in test4001 (line 556) md=solve(md,'Transient'); Error in run (line 99) evalin('caller', strcat(script, ';')); Error in runme (line 156) run(['test' num2str(id)]); Error in matlab_run2 (line 3) runme('benchmark','all','id',[4001],'output','nightly','rank',2,'numprocs',2);FAILURE difference: N/A test id: 4001 test name: IceOcean field: N/A ----------------finished:4001----------------------- MATLABEXITEDCORRECTLY -----------End of matlab_log.log----------- Build step 'Execute shell' marked build as failure Recording test results Finished: FAILURE