Standard Output
+++ Running case: MATLAB-4001
+++ working dir: /home/jenkins/workspace/Debian_Linux-Ice-Ocean/nightlylog
| [41;37m step #1: Parameters [0m
| saving data in: Models/IceOcean.Parameters
| [41;37m step #2: Bathymetry [0m
| saving data in: Models/IceOcean.Bathymetry
| [41;37m step #3: IceSheetGeometry [0m
| saving data in: Models/IceOcean.IceSheetGeometry
| [41;37m step #4: GetMITgcm [0m
| --2025-09-03 10:43:07-- https://github.com/MITgcm/MITgcm/archive/refs/tags/checkpoint68i.tar.gz
| Resolving github.com (github.com)... 140.82.116.3
| Connecting to github.com (github.com)|140.82.116.3|:443... connected.
| HTTP request sent, awaiting response... 302 Found
| Location: https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i [following]
| --2025-09-03 10:43:08-- https://codeload.github.com/MITgcm/MITgcm/tar.gz/refs/tags/checkpoint68i
| Resolving codeload.github.com (codeload.github.com)... 140.82.116.9
| Connecting to codeload.github.com (codeload.github.com)|140.82.116.9|:443... connected.
| HTTP request sent, awaiting response... 200 OK
| Length: unspecified [application/x-gzip]
| Saving to: checkpoint68i.tar.gz
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| 2025-09-03 10:43:19 (14.9 MB/s) - checkpoint68i.tar.gz saved [172875785]
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| MITgcm-checkpoint68i/model/src/ini_cartesian_grid.F
| MITgcm-checkpoint68i/model/src/ini_cg2d.F
| MITgcm-checkpoint68i/model/src/ini_cg3d.F
| MITgcm-checkpoint68i/model/src/ini_cori.F
| MITgcm-checkpoint68i/model/src/ini_curvilinear_grid.F
| MITgcm-checkpoint68i/model/src/ini_cylinder_grid.F
| MITgcm-checkpoint68i/model/src/ini_depths.F
| MITgcm-checkpoint68i/model/src/ini_dynvars.F
| MITgcm-checkpoint68i/model/src/ini_eos.F
| MITgcm-checkpoint68i/model/src/ini_ffields.F
| MITgcm-checkpoint68i/model/src/ini_fields.F
| MITgcm-checkpoint68i/model/src/ini_forcing.F
| MITgcm-checkpoint68i/model/src/ini_global_domain.F
| MITgcm-checkpoint68i/model/src/ini_grid.F
| MITgcm-checkpoint68i/model/src/ini_linear_phisurf.F
| MITgcm-checkpoint68i/model/src/ini_local_grid.F
| MITgcm-checkpoint68i/model/src/ini_masks_etc.F
| MITgcm-checkpoint68i/model/src/ini_mixing.F
| MITgcm-checkpoint68i/model/src/ini_mnc_vars.F
| MITgcm-checkpoint68i/model/src/ini_model_io.F
| MITgcm-checkpoint68i/model/src/ini_nh_fields.F
| MITgcm-checkpoint68i/model/src/ini_nh_vars.F
| MITgcm-checkpoint68i/model/src/ini_nlfs_vars.F
| MITgcm-checkpoint68i/model/src/ini_p_ground.F
| MITgcm-checkpoint68i/model/src/ini_parms.F
| MITgcm-checkpoint68i/model/src/ini_pressure.F
| MITgcm-checkpoint68i/model/src/ini_psurf.F
| MITgcm-checkpoint68i/model/src/ini_salt.F
| MITgcm-checkpoint68i/model/src/ini_sigma_hfac.F
| MITgcm-checkpoint68i/model/src/ini_spherical_polar_grid.F
| MITgcm-checkpoint68i/model/src/ini_theta.F
| MITgcm-checkpoint68i/model/src/ini_vel.F
| MITgcm-checkpoint68i/model/src/ini_vertical_grid.F
| MITgcm-checkpoint68i/model/src/initialise_fixed.F
| MITgcm-checkpoint68i/model/src/initialise_varia.F
| MITgcm-checkpoint68i/model/src/integr_continuity.F
| MITgcm-checkpoint68i/model/src/integrate_for_w.F
| MITgcm-checkpoint68i/model/src/load_fields_driver.F
| MITgcm-checkpoint68i/model/src/load_grid_spacing.F
| MITgcm-checkpoint68i/model/src/load_ref_files.F
| MITgcm-checkpoint68i/model/src/main_do_loop.F
| MITgcm-checkpoint68i/model/src/model_ad_diff.list
| MITgcm-checkpoint68i/model/src/momentum_correction_step.F
| MITgcm-checkpoint68i/model/src/packages_boot.F
| MITgcm-checkpoint68i/model/src/packages_check.F
| MITgcm-checkpoint68i/model/src/packages_error_msg.F
| MITgcm-checkpoint68i/model/src/packages_init_fixed.F
| MITgcm-checkpoint68i/model/src/packages_init_variables.F
| MITgcm-checkpoint68i/model/src/packages_print_msg.F
| MITgcm-checkpoint68i/model/src/packages_readparms.F
| MITgcm-checkpoint68i/model/src/packages_unused_msg.F
| MITgcm-checkpoint68i/model/src/packages_write_pickup.F
| MITgcm-checkpoint68i/model/src/plot_field.F
| MITgcm-checkpoint68i/model/src/port_rand.F
| MITgcm-checkpoint68i/model/src/post_cg3d.F
| MITgcm-checkpoint68i/model/src/pre_cg3d.F
| MITgcm-checkpoint68i/model/src/pressure_for_eos.F
| MITgcm-checkpoint68i/model/src/read_pickup.F
| MITgcm-checkpoint68i/model/src/remove_mean.F
| MITgcm-checkpoint68i/model/src/reset_nlfs_vars.F
| MITgcm-checkpoint68i/model/src/rotate_spherical_polar_grid.F
| MITgcm-checkpoint68i/model/src/rotate_uv2en.F
| MITgcm-checkpoint68i/model/src/salt_integrate.F
| MITgcm-checkpoint68i/model/src/seawater.F
| MITgcm-checkpoint68i/model/src/set_defaults.F
| MITgcm-checkpoint68i/model/src/set_grid_factors.F
| MITgcm-checkpoint68i/model/src/set_parms.F
| MITgcm-checkpoint68i/model/src/set_ref_state.F
| MITgcm-checkpoint68i/model/src/solve_for_pressure.F
| MITgcm-checkpoint68i/model/src/solve_pentadiagonal.F
| MITgcm-checkpoint68i/model/src/solve_tridiagonal.F
| MITgcm-checkpoint68i/model/src/solve_uv_tridiago.F
| MITgcm-checkpoint68i/model/src/state_summary.F
| MITgcm-checkpoint68i/model/src/swfrac.F
| MITgcm-checkpoint68i/model/src/taueddy_init_varia.F
| MITgcm-checkpoint68i/model/src/taueddy_tendency_apply.F
| MITgcm-checkpoint68i/model/src/temp_integrate.F
| MITgcm-checkpoint68i/model/src/the_main_loop.F
| MITgcm-checkpoint68i/model/src/the_model_main.F
| MITgcm-checkpoint68i/model/src/thermodynamics.F
| MITgcm-checkpoint68i/model/src/timestep.F
| MITgcm-checkpoint68i/model/src/timestep_tracer.F
| MITgcm-checkpoint68i/model/src/timestep_wvel.F
| MITgcm-checkpoint68i/model/src/tracers_correction_step.F
| MITgcm-checkpoint68i/model/src/tracers_iigw_correction.F
| MITgcm-checkpoint68i/model/src/turnoff_model_io.F
| MITgcm-checkpoint68i/model/src/update_cg2d.F
| MITgcm-checkpoint68i/model/src/update_etah.F
| MITgcm-checkpoint68i/model/src/update_etaws.F
| MITgcm-checkpoint68i/model/src/update_masks_etc.F
| MITgcm-checkpoint68i/model/src/update_r_star.F
| MITgcm-checkpoint68i/model/src/update_sigma.F
| MITgcm-checkpoint68i/model/src/update_surf_dr.F
| MITgcm-checkpoint68i/model/src/write_grid.F
| MITgcm-checkpoint68i/model/src/write_pickup.F
| MITgcm-checkpoint68i/model/src/write_state.F
| MITgcm-checkpoint68i/optim/
| MITgcm-checkpoint68i/optim/Makefile
| MITgcm-checkpoint68i/optim/Makefile_macosx
| MITgcm-checkpoint68i/optim/README.md
| MITgcm-checkpoint68i/optim/blas1.h
| MITgcm-checkpoint68i/optim/data.ctrl
| MITgcm-checkpoint68i/optim/data.ecco
| MITgcm-checkpoint68i/optim/data.optim
| MITgcm-checkpoint68i/optim/flowchart_optim.txt
| MITgcm-checkpoint68i/optim/minimization.h
| MITgcm-checkpoint68i/optim/optim.h
| MITgcm-checkpoint68i/optim/optim_initmod.F
| MITgcm-checkpoint68i/optim/optim_main.F
| MITgcm-checkpoint68i/optim/optim_numbmod.F
| MITgcm-checkpoint68i/optim/optim_readdata.F
| MITgcm-checkpoint68i/optim/optim_sub.F
| MITgcm-checkpoint68i/optim/optim_write_control.F
| MITgcm-checkpoint68i/optim/optim_writedata.F
| MITgcm-checkpoint68i/optim/simul.F
| MITgcm-checkpoint68i/optim/to_do.txt
| MITgcm-checkpoint68i/optim/utils.F
| MITgcm-checkpoint68i/optim/xerbla.F
| MITgcm-checkpoint68i/pkg/
| MITgcm-checkpoint68i/pkg/admtlm/
| MITgcm-checkpoint68i/pkg/admtlm/ADMTLM_OPTIONS.h
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_bypassad.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_driver.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_dsvd2model.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_init_fixed.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_map.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_metric.F
| MITgcm-checkpoint68i/pkg/admtlm/admtlm_model2dsvd.F
| MITgcm-checkpoint68i/pkg/admtlm/arpack_debug.h
| MITgcm-checkpoint68i/pkg/aim_v23/
| MITgcm-checkpoint68i/pkg/aim_v23/AIM2DYN.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_CO2.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_FFIELDS.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_GRID.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_OPTIONS.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_PARAMS.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_SIZE.h
| MITgcm-checkpoint68i/pkg/aim_v23/AIM_TAVE.h
| MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2dyn.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2land.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_aim2sioce.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_diagnostics_init.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_do_co2.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_do_physics.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_dyn2aim.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_fields_load.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_initialise.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_land2aim.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_land_impl.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_mnc_init.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_readparms.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_sice2aim.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_sice_impl.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_surf_bc.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_tendency_apply.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_v23_description.tex
| MITgcm-checkpoint68i/pkg/aim_v23/aim_write_local.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_write_phys.F
| MITgcm-checkpoint68i/pkg/aim_v23/aim_write_tave.F
| MITgcm-checkpoint68i/pkg/aim_v23/com_cnvcon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_forcing.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_forcon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_lsccon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_physcon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_physvar.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_radcon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_radvar.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_sflcon.h
| MITgcm-checkpoint68i/pkg/aim_v23/com_vdicon.h
| MITgcm-checkpoint68i/pkg/aim_v23/phy_const.h
| MITgcm-checkpoint68i/pkg/aim_v23/phy_convmf.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_driver.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_inphys.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_lscond.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_radiat.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_shtorh.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_snow_precip.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_land.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_ocean.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_post.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_prep.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_suflux_sice.F
| MITgcm-checkpoint68i/pkg/aim_v23/phy_vdifsc.F
| MITgcm-checkpoint68i/pkg/atm2d/
| MITgcm-checkpoint68i/pkg/atm2d/AGRID.h
| MITgcm-checkpoint68i/pkg/atm2d/ATM2D_OPTIONS.h
| MITgcm-checkpoint68i/pkg/atm2d/ATM2D_VARS.h
| MITgcm-checkpoint68i/pkg/atm2d/ATMSIZE.h
| MITgcm-checkpoint68i/pkg/atm2d/CPLIDS.h
| MITgcm-checkpoint68i/pkg/atm2d/DRIVER.h
| MITgcm-checkpoint68i/pkg/atm2d/OCNIDS.h
| MITgcm-checkpoint68i/pkg/atm2d/OCNSIZE.h
| MITgcm-checkpoint68i/pkg/atm2d/OCNVARS.h
| MITgcm-checkpoint68i/pkg/atm2d/accept_component_registrations.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_finish.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_init_fixed.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_init_vars.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_read_pickup.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_readparms.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2d_write_pickup.F
| MITgcm-checkpoint68i/pkg/atm2d/atm2ocn_main.F
| MITgcm-checkpoint68i/pkg/atm2d/calc_1dto2d.F
| MITgcm-checkpoint68i/pkg/atm2d/calc_fileload.F
| MITgcm-checkpoint68i/pkg/atm2d/calc_zonal_means.F
| MITgcm-checkpoint68i/pkg/atm2d/cpl_recv_ocn_fields.F
| MITgcm-checkpoint68i/pkg/atm2d/cpl_recv_ocn_ocnconfig.F
| MITgcm-checkpoint68i/pkg/atm2d/cpl_register_ocn.F
| MITgcm-checkpoint68i/pkg/atm2d/cpl_send_ocn_atmconfig.F
| MITgcm-checkpoint68i/pkg/atm2d/cpl_send_ocn_fields.F
| MITgcm-checkpoint68i/pkg/atm2d/ctrparam.h
| MITgcm-checkpoint68i/pkg/atm2d/exch_component_configs.F
| MITgcm-checkpoint68i/pkg/atm2d/fixed_flux_add.F
| MITgcm-checkpoint68i/pkg/atm2d/forward_step_atm2d.F
| MITgcm-checkpoint68i/pkg/atm2d/get_ocnvars.F
| MITgcm-checkpoint68i/pkg/atm2d/init_atm2d.F
| MITgcm-checkpoint68i/pkg/atm2d/init_sumvars.F
| MITgcm-checkpoint68i/pkg/atm2d/initialise.F
| MITgcm-checkpoint68i/pkg/atm2d/month_end_diags.F
| MITgcm-checkpoint68i/pkg/atm2d/norm_ocn_fluxes.F
| MITgcm-checkpoint68i/pkg/atm2d/pass_thsice_fluxes.F
| MITgcm-checkpoint68i/pkg/atm2d/put_ocnvars.F
| MITgcm-checkpoint68i/pkg/atm2d/read_atmos.F
| MITgcm-checkpoint68i/pkg/atm2d/relax_add.F
| MITgcm-checkpoint68i/pkg/atm2d/subtract_means.F
| MITgcm-checkpoint68i/pkg/atm2d/sum_ocn_fluxes.F
| MITgcm-checkpoint68i/pkg/atm2d/sum_thsice_out.F
| MITgcm-checkpoint68i/pkg/atm2d/sum_yr_end_diags.F
| MITgcm-checkpoint68i/pkg/atm2d/tave_end_diags.F
| MITgcm-checkpoint68i/pkg/atm2d/yr_end_diags.F
| MITgcm-checkpoint68i/pkg/atm_common/
| MITgcm-checkpoint68i/pkg/atm_common/ATM_COMMON_OPTIONS.h
| MITgcm-checkpoint68i/pkg/atm_common/atm_diagnostics_init.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/
| MITgcm-checkpoint68i/pkg/atm_compon_interf/ATMCPL.h
| MITgcm-checkpoint68i/pkg/atm_compon_interf/ATM_CPL_OPTIONS.h
| MITgcm-checkpoint68i/pkg/atm_compon_interf/CPL_PARAMS.h
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_apply_import.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_check_cplconfig.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_cpl_read_pickup.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_atmconfig.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_fields.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_export_fld.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_get_atmconfig.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_import_fields.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_import_ocnconfig.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_aim_fields.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_aim_wndstr.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_dynvars.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_land.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_my_data.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_surfflux.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/atm_store_thsice.F
| MITgcm-checkpoint68i/pkg/atm_compon_interf/cpl_diagnosti
...[truncated 557484 chars]...
xternalpackages/petsc/install/include/petscbt.h petscbt.h; fi
| if [ ! -L petsccharacteristic.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccharacteristic.h petsccharacteristic.h; fi
| if [ ! -L petscconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf.h petscconf.h; fi
| if [ ! -L petscconfiginfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconfiginfo.h petscconfiginfo.h; fi
| if [ ! -L petscconf_poison.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconf_poison.h petscconf_poison.h; fi
| if [ ! -L petscconvest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscconvest.h petscconvest.h; fi
| if [ ! -L petsccxxcomplexfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsccxxcomplexfix.h petsccxxcomplexfix.h; fi
| if [ ! -L petscdevice_cuda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cuda.h petscdevice_cuda.h; fi
| if [ ! -L petscdevice_cupm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_cupm.h petscdevice_cupm.h; fi
| if [ ! -L petscdevice.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice.h petscdevice.h; fi
| if [ ! -L petscdevice_hip.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevice_hip.h petscdevice_hip.h; fi
| if [ ! -L petscdevicetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdevicetypes.h petscdevicetypes.h; fi
| if [ ! -L petscdmadaptor.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptor.h petscdmadaptor.h; fi
| if [ ! -L petscdmadaptortypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmadaptortypes.h petscdmadaptortypes.h; fi
| if [ ! -L petscdmceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmceed.h petscdmceed.h; fi
| if [ ! -L petscdmcomposite.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmcomposite.h petscdmcomposite.h; fi
| if [ ! -L petscdmda.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmda.h petscdmda.h; fi
| if [ ! -L petscdmdatypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmdatypes.h petscdmdatypes.h; fi
| if [ ! -L petscdmfield.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmfield.h petscdmfield.h; fi
| if [ ! -L petscdmforest.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmforest.h petscdmforest.h; fi
| if [ ! -L petscdm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdm.h petscdm.h; fi
| if [ ! -L petscdmlabelephemeral.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabelephemeral.h petscdmlabelephemeral.h; fi
| if [ ! -L petscdmlabel.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabel.h petscdmlabel.h; fi
| if [ ! -L petscdmlabeltypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmlabeltypes.h petscdmlabeltypes.h; fi
| if [ ! -L petscdmmoab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmmoab.h petscdmmoab.h; fi
| if [ ! -L petscdmnetwork.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmnetwork.h petscdmnetwork.h; fi
| if [ ! -L petscdmpatch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmpatch.h petscdmpatch.h; fi
| if [ ! -L petscdmplexceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexceed.h petscdmplexceed.h; fi
| if [ ! -L petscdmplexegads.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplexegads.h petscdmplexegads.h; fi
| if [ ! -L petscdmplex.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplex.h petscdmplex.h; fi
| if [ ! -L petscdmplextransform.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransform.h petscdmplextransform.h; fi
| if [ ! -L petscdmplextransformtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextransformtypes.h petscdmplextransformtypes.h; fi
| if [ ! -L petscdmplextypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmplextypes.h petscdmplextypes.h; fi
| if [ ! -L petscdmproduct.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmproduct.h petscdmproduct.h; fi
| if [ ! -L petscdmredundant.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmredundant.h petscdmredundant.h; fi
| if [ ! -L petscdmshell.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmshell.h petscdmshell.h; fi
| if [ ! -L petscdmsliced.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmsliced.h petscdmsliced.h; fi
| if [ ! -L petscdmstag.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmstag.h petscdmstag.h; fi
| if [ ! -L petscdmswarm.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmswarm.h petscdmswarm.h; fi
| if [ ! -L petscdmtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdmtypes.h petscdmtypes.h; fi
| if [ ! -L petscdraw.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdraw.h petscdraw.h; fi
| if [ ! -L petscdrawtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdrawtypes.h petscdrawtypes.h; fi
| if [ ! -L petscds.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscds.h petscds.h; fi
| if [ ! -L petscdstypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdstypes.h petscdstypes.h; fi
| if [ ! -L petscdt.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdt.h petscdt.h; fi
| if [ ! -L petscdualspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscdualspace.h petscdualspace.h; fi
| if [ ! -L petscerror.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscerror.h petscerror.h; fi
| if [ ! -L petscfeceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfeceed.h petscfeceed.h; fi
| if [ ! -L petscfe.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfe.h petscfe.h; fi
| if [ ! -L petscfetypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfetypes.h petscfetypes.h; fi
| if [ ! -L petscfix.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfix.h petscfix.h; fi
| if [ ! -L petscfvceed.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvceed.h petscfvceed.h; fi
| if [ ! -L petscfv.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfv.h petscfv.h; fi
| if [ ! -L petscfvtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscfvtypes.h petscfvtypes.h; fi
| if [ ! -L petsc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsc.h petsc.h; fi
| if [ ! -L petscis.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscis.h petscis.h; fi
| if [ ! -L petscistypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscistypes.h petscistypes.h; fi
| if [ ! -L petscksp.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscksp.h petscksp.h; fi
| if [ ! -L petsclandau.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclandau.h petsclandau.h; fi
| if [ ! -L petsclayouthdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclayouthdf5.h petsclayouthdf5.h; fi
| if [ ! -L petsclogdeprecated.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogdeprecated.h petsclogdeprecated.h; fi
| if [ ! -L petsclog.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclog.h petsclog.h; fi
| if [ ! -L petsclogtypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsclogtypes.h petsclogtypes.h; fi
| if [ ! -L petscmachineinfo.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmachineinfo.h petscmachineinfo.h; fi
| if [ ! -L petscmacros.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmacros.h petscmacros.h; fi
| if [ ! -L petscmatcoarsen.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatcoarsen.h petscmatcoarsen.h; fi
| if [ ! -L petscmatelemental.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatelemental.h petscmatelemental.h; fi
| if [ ! -L petscmat.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmat.h petscmat.h; fi
| if [ ! -L petscmath.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmath.h petscmath.h; fi
| if [ ! -L petscmathtool.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathtool.h petscmathtool.h; fi
| if [ ! -L petscmathypre.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmathypre.h petscmathypre.h; fi
| if [ ! -L petscmatlab.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscmatlab.h petscmatlab.h; fi
| if [ ! -L petscoptions.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscoptions.h petscoptions.h; fi
| if [ ! -L petscpartitioner.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpartitioner.h petscpartitioner.h; fi
| if [ ! -L petscpc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpc.h petscpc.h; fi
| if [ ! -L petscpctypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpctypes.h petscpctypes.h; fi
| if [ ! -L petscpf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpf.h petscpf.h; fi
| if [ ! -L petscpkg_version.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscpkg_version.h petscpkg_version.h; fi
| if [ ! -L petscsection.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsection.h petscsection.h; fi
| if [ ! -L petscsectiontypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsectiontypes.h petscsectiontypes.h; fi
| if [ ! -L petscsf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsf.h petscsf.h; fi
| if [ ! -L petscsftypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsftypes.h petscsftypes.h; fi
| if [ ! -L petscsnes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnes.h petscsnes.h; fi
| if [ ! -L petscsnestypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsnestypes.h petscsnestypes.h; fi
| if [ ! -L petscspace.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscspace.h petscspace.h; fi
| if [ ! -L petscstring.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscstring.h petscstring.h; fi
| if [ ! -L petscsys.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsys.h petscsys.h; fi
| if [ ! -L petscsystypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscsystypes.h petscsystypes.h; fi
| if [ ! -L petsctao_deprecations.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao_deprecations.h petsctao_deprecations.h; fi
| if [ ! -L petsctao.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctao.h petsctao.h; fi
| if [ ! -L petsctaolinesearch.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctaolinesearch.h petsctaolinesearch.h; fi
| if [ ! -L petsctime.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petsctime.h petsctime.h; fi
| if [ ! -L petscts.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscts.h petscts.h; fi
| if [ ! -L petscvec.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscvec.h petscvec.h; fi
| if [ ! -L petscversion.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscversion.h petscversion.h; fi
| if [ ! -L petscviennacl.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviennacl.h petscviennacl.h; fi
| if [ ! -L petscviewerexodusii.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerexodusii.h petscviewerexodusii.h; fi
| if [ ! -L petscviewer.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewer.h petscviewer.h; fi
| if [ ! -L petscviewerhdf5.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewerhdf5.h petscviewerhdf5.h; fi
| if [ ! -L petscviewersaws.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewersaws.h petscviewersaws.h; fi
| if [ ! -L petscviewertypes.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscviewertypes.h petscviewertypes.h; fi
| if [ ! -L petscwebclient.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/petscwebclient.h petscwebclient.h; fi
| if [ ! -L smumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_c.h smumps_c.h; fi
| if [ ! -L smumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_root.h smumps_root.h; fi
| if [ ! -L smumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/smumps_struc.h smumps_struc.h; fi
| if [ ! -L zconf.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zconf.h zconf.h; fi
| if [ ! -L zlib.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zlib.h zlib.h; fi
| if [ ! -L zmumps_c.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_c.h zmumps_c.h; fi
| if [ ! -L zmumps_root.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_root.h zmumps_root.h; fi
| if [ ! -L zmumps_struc.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include/zmumps_struc.h zmumps_struc.h; fi
| if [ ! -L BAR2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BAR2.h BAR2.h; fi
| if [ ! -L BARRIER.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/BARRIER.h BARRIER.h; fi
| if [ ! -L CPP_EEMACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CPP_EEMACROS.h CPP_EEMACROS.h; fi
| if [ ! -L CUMULSUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/CUMULSUM.h CUMULSUM.h; fi
| if [ ! -L DEF_IN_MAKEFILE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/DEF_IN_MAKEFILE.h DEF_IN_MAKEFILE.h; fi
| if [ ! -L EEBUFF_SCPU.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEBUFF_SCPU.h EEBUFF_SCPU.h; fi
| if [ ! -L EEPARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EEPARAMS.h EEPARAMS.h; fi
| if [ ! -L EESUPPORT.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EESUPPORT.h EESUPPORT.h; fi
| if [ ! -L EXCH.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/EXCH.h EXCH.h; fi
| if [ ! -L GLOBAL_MAX.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_MAX.h GLOBAL_MAX.h; fi
| if [ ! -L GLOBAL_SUM.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/GLOBAL_SUM.h GLOBAL_SUM.h; fi
| if [ ! -L MAIN_PDIRECTIVES1.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES1.h MAIN_PDIRECTIVES1.h; fi
| if [ ! -L MAIN_PDIRECTIVES2.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MAIN_PDIRECTIVES2.h MAIN_PDIRECTIVES2.h; fi
| if [ ! -L MPI_INFO.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/MPI_INFO.h MPI_INFO.h; fi
| if [ ! -L SIGREG.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/eesupp/inc/SIGREG.h SIGREG.h; fi
| if [ ! -L CG2D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG2D.h CG2D.h; fi
| if [ ! -L CG3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CG3D.h CG3D.h; fi
| if [ ! -L CPP_OPTIONS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/CPP_OPTIONS.h CPP_OPTIONS.h; fi
| if [ ! -L DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXC_MACROS.h DXC_MACROS.h; fi
| if [ ! -L DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXF_MACROS.h DXF_MACROS.h; fi
| if [ ! -L DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXG_MACROS.h DXG_MACROS.h; fi
| if [ ! -L DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DXV_MACROS.h DXV_MACROS.h; fi
| if [ ! -L DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYC_MACROS.h DYC_MACROS.h; fi
| if [ ! -L DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYF_MACROS.h DYF_MACROS.h; fi
| if [ ! -L DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYG_MACROS.h DYG_MACROS.h; fi
| if [ ! -L DYNVARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYNVARS.h DYNVARS.h; fi
| if [ ! -L DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/DYU_MACROS.h DYU_MACROS.h; fi
| if [ ! -L EOS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/EOS.h EOS.h; fi
| if [ ! -L FCORI_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FCORI_MACROS.h FCORI_MACROS.h; fi
| if [ ! -L FFIELDS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/FFIELDS.h FFIELDS.h; fi
| if [ ! -L GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID.h GRID.h; fi
| if [ ! -L GRID_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/GRID_MACROS.h GRID_MACROS.h; fi
| if [ ! -L HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACC_MACROS.h HFACC_MACROS.h; fi
| if [ ! -L HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACS_MACROS.h HFACS_MACROS.h; fi
| if [ ! -L HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/HFACW_MACROS.h HFACW_MACROS.h; fi
| if [ ! -L MASKS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKS_MACROS.h MASKS_MACROS.h; fi
| if [ ! -L MASKW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/MASKW_MACROS.h MASKW_MACROS.h; fi
| if [ ! -L NH_VARS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/NH_VARS.h NH_VARS.h; fi
| if [ ! -L PARAMS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/PARAMS.h PARAMS.h; fi
| if [ ! -L RA_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RA_MACROS.h RA_MACROS.h; fi
| if [ ! -L RAS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAS_MACROS.h RAS_MACROS.h; fi
| if [ ! -L RAW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RAW_MACROS.h RAW_MACROS.h; fi
| if [ ! -L RECIP_DXC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXC_MACROS.h RECIP_DXC_MACROS.h; fi
| if [ ! -L RECIP_DXF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXF_MACROS.h RECIP_DXF_MACROS.h; fi
| if [ ! -L RECIP_DXG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXG_MACROS.h RECIP_DXG_MACROS.h; fi
| if [ ! -L RECIP_DXV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DXV_MACROS.h RECIP_DXV_MACROS.h; fi
| if [ ! -L RECIP_DYC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYC_MACROS.h RECIP_DYC_MACROS.h; fi
| if [ ! -L RECIP_DYF_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYF_MACROS.h RECIP_DYF_MACROS.h; fi
| if [ ! -L RECIP_DYG_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYG_MACROS.h RECIP_DYG_MACROS.h; fi
| if [ ! -L RECIP_DYU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_DYU_MACROS.h RECIP_DYU_MACROS.h; fi
| if [ ! -L RECIP_HFACC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACC_MACROS.h RECIP_HFACC_MACROS.h; fi
| if [ ! -L RECIP_HFACS_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACS_MACROS.h RECIP_HFACS_MACROS.h; fi
| if [ ! -L RECIP_HFACW_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RECIP_HFACW_MACROS.h RECIP_HFACW_MACROS.h; fi
| if [ ! -L RESTART.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/RESTART.h RESTART.h; fi
| if [ ! -L SET_GRID.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SET_GRID.h SET_GRID.h; fi
| if [ ! -L SOLVE_FOR_PRESSURE3D.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE3D.h SOLVE_FOR_PRESSURE3D.h; fi
| if [ ! -L SOLVE_FOR_PRESSURE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SOLVE_FOR_PRESSURE.h SOLVE_FOR_PRESSURE.h; fi
| if [ ! -L SURFACE.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/SURFACE.h SURFACE.h; fi
| if [ ! -L TANPHIATU_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATU_MACROS.h TANPHIATU_MACROS.h; fi
| if [ ! -L TANPHIATV_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/TANPHIATV_MACROS.h TANPHIATV_MACROS.h; fi
| if [ ! -L THE_MODEL_COMMON_BLOCKS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/THE_MODEL_COMMON_BLOCKS.h THE_MODEL_COMMON_BLOCKS.h; fi
| if [ ! -L XC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/XC_MACROS.h XC_MACROS.h; fi
| if [ ! -L YC_MACROS.h ]; then ln -s /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/model/inc/YC_MACROS.h YC_MACROS.h; fi
| Creating FC_NAMEMANGLE.h ...
| echo "#define FC_NAMEMANGLE(X) X ## _" > FC_NAMEMANGLE.h
| Creating BUILD_INFO.h ...
| echo "#define THISVER 'checkpoint68i'" > BUILD_INFO.h
| echo "#define THISUSER 'jenkins'" >> BUILD_INFO.h
| echo "#define THISDATE 'Wed Sep 3 10:43:26 AM PDT 2025'" >> BUILD_INFO.h
| echo "#define THISHOST 'Debian-12-VM'" >> BUILD_INFO.h
| make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/MITgcm/build'
| /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/xmakedepend -f Makefile -o .f -DWORDLENGTH=4 -DNML_TERMINATOR -DALLOW_USE_MPI -DHAVE_SYSTEM -DHAVE_FDATE -DHAVE_ETIME_SBR -DHAVE_CLOC -DHAVE_SETRLSTK -DHAVE_SIGREG -DHAVE_STAT -DHAVE_FLUSH -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/home/jenkins/workspace/Debian_Linux-Ice-Ocean/externalpackages/petsc/install/include -I/usr/lib/gcc/x86_64-linux-gnu/12/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cpl_issm.F do_oceanic_phys.F eeboot_minimal.F eedie.F chksum_tiled.F debug_call.F debug_cs_corner_uv.F debug_enter.F debug_fld_stats_rl.F debug_fld_stats_rs.F debug_leave.F debug_msg.F debug_stats_rl.F debug_stats_rs.F fill_in_corners_rl.F write_fullarray_rl.F write_fullarray_rs.F diag_calc_psivel.F diag_cg2d.F diagnostics_addtolist.F diagnostics_calc_phivel.F diagnostics_check.F diagnostics_clear.F diagnostics_fill.F diagnostics_fill_field.F diagnostics_fill_rs.F diagnostics_fill_state.F diagnostics_fract_fill.F diagnostics_ini_io.F diagnostics_init_early.F diagnostics_init_fixed.F diagnostics_init_varia.F diagnostics_interp_p2p.F diagnostics_interp_vert.F diagnostics_is_on.F diagnostics_list_check.F diagnostics_main_init.F diagnostics_mnc_out.F diagnostics_out.F diagnostics_readparms.F diagnostics_read_pickup.F diagnostics_scale_fill.F diagnostics_scale_fill_rs.F diagnostics_set_calc.F diagnostics_setdiag.F diagnostics_set_levels.F diagnostics_set_pointers.F diagnostics_status_error.F diagnostics_sum_levels.F diagnostics_summary.F diagnostics_switch_onoff.F diagnostics_utils.F diagnostics_write_adj.F diagnostics_write.F diagnostics_write_pickup.F diagstats_ascii_out.F diagstats_calc.F diagstats_clear.F diagstats_close_io.F diagstats_fill.F diagstats_global.F diagstats_ini_io.F diagstats_local.F diagstats_mnc_out.F diagstats_others_calc.F diagstats_output.F diagstats_setdiag.F diagstats_set_pointers.F diagstats_set_regions.F diag_vegtile_fill.F gad_advection.F gad_advscheme.F gad_biharm_r.F gad_biharm_x.F gad_biharm_y.F gad_c2_adv_r.F gad_c2_adv_x.F gad_c2_adv_y.F gad_c2_impl_r.F gad_c4_adv_r.F gad_c4_adv_x.F gad_c4_adv_y.F gad_calc_rhs.F gad_check.F gad_del2.F gad_diagnostics_init.F gad_diagnostics_state.F gad_diff_r.F gad_diff_x.F gad_diff_y.F gad_dst2u1_adv_r.F gad_dst2u1_adv_x.F gad_dst2u1_adv_y.F gad_dst2u1_impl_r.F gad_dst3_adv_r.F gad_dst3_adv_x.F gad_dst3_adv_y.F gad_dst3fl_adv_r.F gad_dst3fl_adv_x.F gad_dst3fl_adv_y.F gad_dst3fl_impl_r.F gad_exch_som.F gad_fluxlimit_adv_r.F gad_fluxlimit_adv_x.F gad_fluxlimit_adv_y.F gad_fluxlimit_impl_r.F gad_grad_x.F gad_grad_y.F gad_implicit_r.F gad_init_fixed.F gad_init_varia.F gad_os7mp_adv_r.F gad_os7mp_adv_x.F gad_os7mp_adv_y.F gad_osc_hat_r.F gad_osc_hat_x.F gad_osc_hat_y.F gad_osc_mul_r.F gad_osc_mul_x.F gad_osc_mul_y.F gad_plm_fun.F gad_ppm_adv_r.F gad_ppm_adv_x.F gad_ppm_adv_y.F gad_ppm_flx_r.F gad_ppm_flx_x.F gad_ppm_flx_y.F gad_ppm_fun.F gad_ppm_hat_r.F gad_ppm_hat_x.F gad_ppm_hat_y.F gad_ppm_p3e_r.F gad_ppm_p3e_x.F gad_ppm_p3e_y.F gad_pqm_adv_r.F gad_pqm_adv_x.F gad_pqm_adv_y.F gad_pqm_flx_r.F gad_pqm_flx_x.F gad_pqm_flx_y.F gad_pqm_fun.F gad_pqm_hat_r.F gad_pqm_hat_x.F gad_pqm_hat_y.F gad_pqm_p5e_r.F gad_pqm_p5e_x.F gad_pqm_p5e_y.F gad_read_pickup.F gad_som_advect.F gad_som_adv_r.F gad_som_adv_x.F gad_som_adv_y.F gad_som_exchanges.F gad_som_fill_cs_corner.F gad_som_lim_r.F gad_som_prep_cs_corner.F gad_u3_adv_r.F gad_u3_adv_x.F gad_u3_adv_y.F gad_u3c4_impl_r.F gad_write_pickup.F salt_fill.F mdsio_buffertorl.F mdsio_buffertors.F mdsio_check4file.F mdsio_facef_read.F mdsio_gl.F mdsio_gl_slice.F mdsio_pass_r4torl.F mdsio_pass_r4tors.F mdsio_pass_r8torl.F mdsio_pass_r8tors.F mdsio_rd_rec_rl.F mdsio_rd_rec_rs.F mdsio_read_field.F mdsio_read_meta.F mdsio_read_section.F mdsio_read_tape.F mdsio_readvec_loc.F mdsio_read_whalos.F mdsio_rw_field.F mdsio_rw_slice.F mdsio_seg4torl.F mdsio_seg4tors.F mdsio_seg8torl.F mdsio_seg8tors.F mdsio_segxtorx_2d.F mdsio_write_field.F mdsio_writelocal.F mdsio_write_meta.F mdsio_write_section.F mdsio_write_tape.F mdsio_writevec_loc.F mdsio_write_whalos.F mdsio_wr_metafiles.F mdsio_wr_rec_rl.F mdsio_wr_rec_rs.F mom_calc_3d_strain.F mom_calc_absvort3.F mom_calc_hdiv.F mom_calc_hfacz.F mom_calc_ke.F mom_calc_relvort3.F mom_calc_smag_3d.F mom_calc_strain.F mom_calc_tension.F mom_calc_visc.F mom_diagnostics_init.F mom_hdissip.F mom_init_fixed.F mom_quasihydrostatic.F mom_u_botdrag_coeff.F mom_u_coriolis_nh.F mom_u_implicit_r.F mom_u_metric_nh.F mom_u_rviscflux.F mom_u_sidedrag.F mom_uv_smag_3d.F mom_v_botdrag_coeff.F mom_v_coriolis_nh.F mom_v_implicit_r.F mom_visc_qgl_limit.F mom_visc_qgl_stretch.F mom_v_metric_nh.F mom_v_rviscflux.F mom_v_sidedrag.F mom_w_coriolis_nh.F mom_w_metric_nh.F mom_w_sidedrag.F mom_w_smag_3d.F mom_calc_rtrans.F mom_fluxform.F mom_u_adv_uu.F mom_u_adv_vu.F mom_u_adv_wu.F mom_u_coriolis.F mom_u_del2u.F mom_u_metric_cylinder.F mom_u_metric_sphere.F mom_uv_boundary.F mom_u_xviscflux.F mom_u_yviscflux.F mom_v_adv_uv.F mom_v_adv_vv.F mom_v_adv_wv.F mom_v_coriolis.F mom_v_del2v.F mom_v_metric_cylinder.F mom_v_metric_sphere.F mom_v_xviscflux.F mom_v_yviscflux.F mom_vecinv.F mom_vi_coriolis.F mom_vi_del2uv.F mom_vi_hdissip.F mom_vi_u_coriolis_c4.F mom_vi_u_coriolis.F mom_vi_u_grad_ke.F mom_vi_u_vertshear.F mom_vi_v_coriolis_c4.F mom_vi_v_coriolis.F mom_vi_v_grad_ke.F mom_vi_v_vertshear.F mon_advcfl.F mon_advcflw2.F mon_advcflw.F mon_calc_advcfl.F mon_calc_stats_rl.F mon_calc_stats_rs.F mon_init.F monitor_ad.F monitor.F monitor_g.F mon_ke.F mon_out.F mon_printstats_rl.F mon_printstats_rs.F mon_set_iounit.F mon_set_pref.F mon_solution.F mon_stats_latbnd_rl.F mon_stats_rl.F mon_stats_rs.F mon_surfcor.F mon_vort3.F mon_writestats_rl.F mon_writestats_rs.F obcs_add_tides.F obcs_adjust.F obcs_adjust_uvice.F obcs_apply_eta.F obcs_apply_ptracer.F obcs_apply_r_star.F obcs_apply_seaice.F obcs_apply_surf_dr.F obcs_apply_ts.F obcs_apply_uv.F obcs_apply_uvice.F obcs_apply_w.F obcs_balance_flow.F obcs_calc.F obcs_calc_stevens.F obcs_check_depths.F obcs_check.F obcs_copy_tracer.F obcs_copy_uv_n.F obcs_diag_balance.F obcs_exchanges.F obcs_exf_load.F obcs_fields_load.F obcs_init_fixed.F obcs_init_variables.F obcs_monitor.F obcs_mon_stats.F obcs_output.F obcs_prescribe_read.F obcs_readparms.F obcs_read_pickup.F obcs_save_uv_n.F obcs_seaice_sponge.F obcs_set_connect.F obcs_sponge.F obcs_u1_adv_tracer.F obcs_write_pickup.F orlanski_east.F orlanski_init.F orlanski_north.F orlanski_south.F orlanski_west.F get_write_global_fld.F read_fld_xy_rl.F read_fld_xy_rs.F read_fld_xyz_rl.F read_fld_xyz_rs.F read_glvec_rl.F read_glvec_rs.F read_mflds.F read_rec.F rw_get_suffix.F set_write_global_fld.F write_fld_3d_rl.F write_fld_3d_rs.F write_fld_s3d_rl.F write_fld_s3d_rs.F write_fld_xy_rl.F write_fld_xy_rs.F write_fld_xyz_rl.F write_fld_xyz_rs.F write_glvec_rl.F write_glvec_rs.F write_local_rl.F write_local_rs.F write_rec.F shelfice_check.F shelfice_cost_accumulate.F shelfice_cost_final.F shelfice_cost_shifwflx.F shelfice_diagnostics_drag.F shelfice_forcing.F shelfice_forcing_surf.F shelfice_init_depths.F shelfice_init_fixed.F shelfice_init_varia.F shelfice_mask_seaice.F shelfice_mnc_init.F shelfice_output.F shelfice_readparms.F shelfice_read_pickup.F shelfice_remesh_calc_w.F shelfice_remesh_c_mask.F shelfice_remeshing.F shelfice_remesh_state.F shelfice_remesh_uv_mask.F shelfice_step_icemass.F shelfice_thermodynamics.F shelfice_u_drag_coeff.F shelfice_v_drag_coeff.F shelfice_write_pickup.F timeave_cumul_1k1t.F timeave_cumul_1t.F timeave_cumul_1vfc.F timeave_cumul_2v.F timeave_cumul_2vfc.F timeave_cumulate.F timeave_cumul_dif_1t.F timeave_init_fixed.F timeave_norma_2v.F timeave_normalize.F timeave_reset.F timeave_statvars.F timeave_statv_write.F timeave_surf_flux.F all_proc_die.F bar2.F bar_check.F barrier.F check_threads.F comm_stats.F cumulsum_z_tile.F different_multiple.F diff_phase_multiple.F eeboot.F eedata_example.F eeintro_msg.F eeset_parms.F eewrite_eeenv.F exch0_r4.F exch0_r8.F exch0_rl.F exch0_rs.F exch1_bg_r4_cube.F exch1_bg_r8_cube.F exch1_bg_rl_cube.F exch1_bg_rs_cube.F exch1_r4_cube.F exch1_r4.F exch1_r8_cube.F exch1_r8.F exch1_rl_ad.F exch1_rl_cube_ad.F exch1_rl_cube.F exch1_rl.F exch1_rs_ad.F exch1_rs_cube_ad.F exch1_rs_cube.F exch1_rs.F exch1_uv_r4_cube.F exch1_uv_r8_cube.F exch1_uv_rl_cube.F exch1_uv_rs_cube.F exch1_z_r4_cube.F exch1_z_r8_cube.F exch1_z_rl_cube.F exch1_z_rs_cube.F exch_3d_r4.F exch_3d_r8.F exch_3d_rl.F exch_3d_rs.F exch_cycle_ebl.F exch_init.F exch_r4_recv_get_x.F exch_r4_recv_get_y.F exch_r4_send_put_x.F exch_r4_send_put_y.F exch_r8_recv_get_x.F exch_r8_recv_get_y.F exch_r8_send_put_x.F exch_r8_send_put_y.F exch_rl_recv_get_x.F exch_rl_recv_get_y.F exch_rl_send_put_x.F exch_rl_send_put_y.F exch_rs_recv_get_x.F exch_rs_recv_get_y.F exch_rs_send_put_x.F exch_rs_send_put_y.F exch_s3d_r4.F exch_s3d_r8.F exch_s3d_rl.F exch_s3d_rs.F exch_sm_3d_r4.F exch_sm_3d_r8.F exch_sm_3d_rl.F exch_sm_3d_rs.F exch_uv_3d_r4.F exch_uv_3d_r8.F exch_uv_3d_rl.F exch_uv_3d_rs.F exch_uv_agrid_3d_r4.F exch_uv_agrid_3d_r8.F exch_uv_agrid_3d_rl.F exch_uv_agrid_3d_rs.F exch_uv_bgrid_3d_r4.F exch_uv_bgrid_3d_r8.F exch_uv_bgrid_3d_rl.F exch_uv_bgrid_3d_rs.F exch_uv_dgrid_3d_r4.F exch_uv_dgrid_3d_r8.F exch_uv_dgrid_3d_rl.F exch_uv_dgrid_3d_rs.F exch_uv_xy_r4.F exch_uv_xy_r8.F exch_uv_xy_rl.F exch_uv_xy_rs.F exch_uv_xyz_r4.F exch_uv_xyz_r8.F exch_uv_xyz_rl.F exch_uv_xyz_rs.F exch_xy_r4.F exch_xy_r8.F exch_xy_rl.F exch_xy_rs.F exch_xyz_r4.F exch_xyz_r8.F exch_xyz_rl.F exch_xyz_rs.F exch_z_3d_r4.F exch_z_3d_r8.F exch_z_3d_rl.F exch_z_3d_rs.F fill_cs_corner_ag_rl.F fill_cs_corner_tr_rl.F fill_cs_corner_uv_rl.F fill_cs_corner_uv_rs.F fool_the_compiler.F gather_2d_r4.F gather_2d_r8.F gather_2d_wh_r4.F gather_2d_wh_r8.F gather_vec_r4.F gather_vec_r8.F gather_xz.F gather_yz.F get_periodic_interval.F global_max.F global_sum.F global_sum_singlecpu.F global_sum_tile.F global_vec_sum.F gsum.F ini_communication_patterns.F ini_procs.F ini_threading_environment.F lef_zero.F main.F master_cpu_io.F master_cpu_thread.F mds_byteswapi4.F mds_byteswapr4.F mds_byteswapr8.F mdsfindunit.F mds_flush.F mds_reclen.F memsync.F nml_change_syntax.F nml_set_terminator.F open_copy_data_file.F print.F reset_halo.F scatter_2d_r4.F scatter_2d_r8.F scatter_2d_wh_r4.F scatter_2d_wh_r8.F scatter_vec_r4.F scatter_vec_r8.F scatter_xz.F scatter_yz.F stop_if_error.F timers.F utils.F write_utils.F adams_bashforth2.F adams_bashforth3.F add_walls2masks.F apply_forcing.F calc_3d_diffusivity.F calc_adv_flow.F calc_div_ghat.F calc_eddy_stress.F calc_grad_phi_fv.F calc_grad_phi_hyd.F calc_grad_phi_surf.F calc_grid_angles.F calc_gw.F calc_ivdc.F calc_oce_mxlayer.F calc_phi_hyd.F calc_r_star.F calc_surf_dr.F calc_viscosity.F calc_wsurf_tr.F cg2d_ex0.F cg2d.F cg2d_nsa.F cg2d_sr.F cg3d_ex0.F cg3d.F check_pickup.F config_check.F config_summary.F convective_adjustment.F convective_adjustment_ini.F convectively_mixtracer.F convective_weights.F correction_step.F cycle_ab_tracer.F cycle_tracer.F diags_oceanic_surf_flux.F diags_phi_hyd.F diags_phi_rlow.F diags_rho.F diags_sound_speed.F do_atmospheric_phys.F do_fields_blocking_exchanges.F do_stagger_fields_exchanges.F do_statevars_diags.F do_statevars_tave.F do_the_model_io.F do_write_pickup.F dynamics.F external_fields_load.F external_forcing.F external_forcing_surf.F find_alpha.F find_hyd_press_1d.F find_rho.F forcing_surf_relax.F forward_step.F freesurf_rescale_g.F freeze_surface.F grad_sigma.F gsw_teos10.F impldiff.F ini_cartesian_grid.F ini_cg2d.F ini_cg3d.F ini_cori.F ini_curvilinear_grid.F ini_cylinder_grid.F ini_depths.F ini_dynvars.F ini_eos.F ini_ffields.F ini_fields.F ini_forcing.F ini_global_domain.F ini_grid.F ini_linear_phisurf.F ini_local_grid.F ini_masks_etc.F ini_mixing.F ini_mnc_vars.F ini_model_io.F ini_nh_fields.F ini_nh_vars.F ini_nlfs_vars.F ini_parms.F ini_p_ground.F ini_pressure.F ini_psurf.F ini_salt.F ini_sigma_hfac.F ini_spherical_polar_grid.F ini_theta.F initialise_fixed.F initialise_varia.F ini_vel.F ini_vertical_grid.F integrate_for_w.F integr_continuity.F load_fields_driver.F load_grid_spacing.F load_ref_files.F main_do_loop.F momentum_correction_step.F packages_boot.F packages_check.F packages_error_msg.F packages_init_fixed.F packages_init_variables.F packages_print_msg.F packages_readparms.F packages_unused_msg.F packages_write_pickup.F plot_field.F port_rand.F post_cg3d.F pre_cg3d.F pressure_for_eos.F read_pickup.F remove_mean.F reset_nlfs_vars.F rotate_spherical_polar_grid.F rotate_uv2en.F salt_integrate.F seawater.F set_defaults.F set_grid_factors.F set_parms.F set_ref_state.F solve_for_pressure.F solve_pentadiagonal.F solve_tridiagonal.F solve_uv_tridiago.F state_summary.F swfrac.F taueddy_init_varia.F taueddy_tendency_apply.F temp_integrate.F the_main_loop.F the_model_main.F thermodynamics.F timestep.F timestep_tracer.F timestep_wvel.F tracers_correction_step.F tracers_iigw_correction.F turnoff_model_io.F update_cg2d.F update_etah.F update_etaws.F update_masks_etc.F update_r_star.F update_sigma.F update_surf_dr.F write_grid.F write_pickup.F write_state.F
| Appending dependencies to Makefile
| /home/jenkins/workspace/Debian_Linux-Ice-Ocean/test/NightlyRun/../MITgcm/../MITgcm/install/tools/f90mkdepend >> Makefile
| WARNING: f90mkdepend: no source file found for module a
| WARNING: f90mkdepend: no source file found for module `petscdtbinomial()`
| WARNING: f90mkdepend: no source file found for module `petsctabulationgetdata()`
| WARNING: f90mkdepend: no source file found for module `seterra()`
| WARNING: f90mkdepend: no source file found for module `seterra()`
| WARNING: f90mkdepend: no source file found for module `petsccalla()`.
| WARNING: f90mkdepend: no source file found for module `chkmema`
| WARNING: f90mkdepend: no source file found for module `petscstackpushexternal()`
| WARNING: f90mkdepend: no source file found for module `petscfunctionbeginuser`
| WARNING: f90mkdepend: no source file found for module `kspsettype()`
| WARNING: f90mkdepend: no source file found for module `matsettype()`
| WARNING: f90mkdepend: no source file found for module this
| WARNING: f90mkdepend: no source file found for module `petscobjectoptionsbegin()`
| WARNING: f90mkdepend: no source file found for module `pcsettype()`
| WARNING: f90mkdepend: no source file found for module `mpiu_sf_node`
| WARNING: f90mkdepend: no source file found for module `snessettype()`
| WARNING: f90mkdepend: no source file found for module `sneslinesearchsettype()`
| WARNING: f90mkdepend: no source file found for module `petscfree()`
| WARNING: f90mkdepend: no source file found for module `petsc_null_integer`
| WARNING: f90mkdepend: no source file found for module `petsc_unlimited_integer`
| WARNING: f90mkdepend: no source file found for module `petsc_decide_integer`
| WARNING: f90mkdepend: no source file found for module `petsc_determine_integer`
| WARNING: f90mkdepend: no source file found for module `petsc_decide`
| WARNING: f90mkdepend: no source file found for module `petsc_current_integer`
| WARNING: f90mkdepend: no source file found for module of
| WARNING: f90mkdepend: no source file found for module `petscint64mult()`
| WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()`
| WARNING: f90mkdepend: no source file found for module `petscintmulterror()`
| WARNING: f90mkdepend: no source file found for module `petscint64mult()`
| WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()`
| WARNING: f90mkdepend: no source file found for module `petscintmulterror()`
| WARNING: f90mkdepend: no source file found for module `petscint64mult()`
| WARNING: f90mkdepend: no source file found for module `petscrealintmulttruncate()`
| WARNING: f90mkdepend: no source file found for module `petscintmulterror()`
| WARNING: f90mkdepend: no source file found for module `petscint64mult()`
| WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()`
| WARNING: f90mkdepend: no source file found for module `petscint64mult()`
| WARNING: f90mkdepend: no source file found for module `petscintmulttruncate()`
| WARNING: f90mkdepend: no source file found for module the
| WARNING: f90mkdepend: no source file found for module `petscclassidregister()`
| WARNING: f90mkdepend: no source file found for module `petsccount_fmt`
| WARNING: f90mkdepend: no source file found for module of
| WARNING: f90mkdepend: no source file found for module `tssettype()`
| WARNING: f90mkdepend: no source file found for module `petscviewerfilesetmode()`
| rm -f makedepend.out
| [41;37m step #6: RunUncoupledMITgcm [0m
| Year: 0
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| [41;37m step #7: CreateMesh [0m
| Info: creating coordinates in polar stereographic (Std Latitude: 71S Meridian: 0)
| saving model as: Models/IceOcean.CreateMesh
| [41;37m step #8: MeshGeometry [0m
| saving model as: Models/IceOcean.MeshGeometry
| [41;37m step #9: ParameterizeIce [0m
| saving model as: Models/IceOcean.ParameterizeIce
| [41;37m step #10: RunUncoupledISSM [0m
| checking model consistency
| marshalling file test4001.bin
| uploading input file and queuing script
| launching solution sequence on remote cluster
| /home/jenkins/workspace/Debian_Linux-Ice-Ocean//etc/environment.sh: line 329: syntax error in conditional expression
| loading results from cluster
| cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-09-03-2025-10-46-10-2177023//test4001.outlog': No such file or directory
| cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-09-03-2025-10-46-10-2177023//test4001.errlog': No such file or directory
| cp: cannot stat '/home/jenkins/workspace/Debian_Linux-Ice-Ocean//execution/test4001-09-03-2025-10-46-10-2177023//test4001.outbin': No such file or directory
| Error using loadresultsfromdisk
| =========================================================================
| Binary file test4001.outbin not found
| This typically results from an error encountered during the simulation
| Please check for error messages above or in the outlog
| =========================================================================
| Error in loadresultsfromcluster (line 50)
| md=loadresultsfromdisk(md,[md.miscellaneous.name '.outbin']);
| Error in solve (line 180)
| md=loadresultsfromcluster(md);
| Error in test4001 (line 556)
| md=solve(md,'Transient');
| Error in run (line 99)
| evalin('caller', strcat(script, ';'));
| Error in runme (line 156)
| run(['test' num2str(id)]);
| Error in matlab_run2 (line 3)
| runme('benchmark','all','id',[4001],'output','nightly','rank',2,'numprocs',2);FAILURE difference: N/A test id: 4001 test name: IceOcean field: N/A
+++ exit code: 0
