Started by GitHub push by MathieuMorlighem Running as SYSTEM Building remotely on macOS-Intel (mac) in workspace /Users/jenkins/workspace/macOS-Intel-Solid_Earth The recommended git tool is: NONE > git rev-parse --resolve-git-dir /Users/jenkins/workspace/macOS-Intel-Solid_Earth/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.37.1 (Apple Git-137.1)' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision 0dc0143216ab0b4900eec870c61709bfcf7aca47 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 0dc0143216ab0b4900eec870c61709bfcf7aca47 # timeout=10 Commit message: "CHG: no more forum" > git rev-list --no-walk 6165a1e047a49a26aed34626408c3cb5f6a585bd # timeout=10 [macOS-Intel-Solid_Earth] $ /bin/bash /var/folders/j6/3xhtbkbs3kj24wm4s4s4b99w0000gp/T/jenkins366889422569929410.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== List of changed files --------------------- configure.ac src/c/main/EnvironmentInit.cpp -- checking for changed externalpackages... no -- checking for reconfiguration... no -- checking for recompilation... yes ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping boost ====================================================== ====================================================== Skipping dakota ====================================================== ====================================================== Skipping chaco ====================================================== ====================================================== Skipping curl ====================================================== ====================================================== Skipping hdf5 ====================================================== ====================================================== Skipping netcdf ====================================================== ====================================================== Skipping proj ====================================================== ====================================================== Skipping gdal ====================================================== ====================================================== Skipping gshhg ====================================================== ====================================================== Skipping gmt ====================================================== ====================================================== Skipping gmsh ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping m1qn3 ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Compiling ISSM ====================================================== Making with 4 CPUs CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /Users/jenkins/workspace/macOS-Intel-Solid_Earth/aux-config/missing aclocal-1.16 -I m4 CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /Users/jenkins/workspace/macOS-Intel-Solid_Earth/aux-config/missing autoconf cd . && /bin/sh /Users/jenkins/workspace/macOS-Intel-Solid_Earth/aux-config/missing automake-1.16 --foreign /bin/sh ./config.status --recheck running CONFIG_SHELL=/bin/sh /bin/sh ./configure --prefix=/Users/jenkins/workspace/macOS-Intel-Solid_Earth --disable-static --enable-development --enable-debugging --with-numthreads=4 --with-matlab-dir=/Applications/MATLAB_R2023b.app --with-python=/Users/jenkins/.venv/issm/bin/python --with-fortran-lib=-L/usr/local/gfortran/lib -lgfortran --with-mpi-include=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install/include --with-mpi-libflags=-L/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort --with-blas-lapack-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-metis-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-parmetis-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-scalapack-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-mumps-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-hdf5-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/hdf5/install --with-petsc-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install --with-boost-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/boost/install --with-dakota-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/dakota/install --with-chaco-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/chaco/install --with-proj-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/proj/install --with-triangle-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/triangle/install --with-m1qn3-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/m1qn3/install --with-semic-dir=/Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/semic/install --no-create --no-recursion configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-apple-darwin21.6.0 checking host system type... x86_64-apple-darwin21.6.0 checking target system type... x86_64-apple-darwin21.6.0 checking for mpicc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... rm: conftest.dSYM: is a directory yes checking how to run the C preprocessor... mpicc -E checking for mpicxx... mpicxx checking whether we are using the GNU C++ compiler... yes checking whether mpicxx accepts -g... yes checking for mpifort... mpifort checking whether we are using the GNU Fortran 77 compiler... yes checking whether mpifort accepts -g... yes checking for mpifort... mpifort checking whether we are using the GNU Fortran compiler... yes checking whether mpifort accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./aux-config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of mpicc... gcc3 checking dependency style of mpicxx... gcc3 checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/local/opt/gnu-sed/libexec/gnubin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by mpicc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 786432 checking how to convert x86_64-apple-darwin21.6.0 file names to x86_64-apple-darwin21.6.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin21.6.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... rm: conftest.dSYM: is a directory no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... rm: conftest.dSYM: is a directory ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fno-common -DPIC checking if mpicc PIC flag -fno-common -DPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the mpicxx linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for mpicxx option to produce PIC... -fno-common -DPIC checking if mpicxx PIC flag -fno-common -DPIC works... yes checking if mpicxx static flag -static works... no checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpifort option to produce PIC... -fno-common checking if mpifort PIC flag -fno-common works... yes checking if mpifort static flag -static works... no checking if mpifort supports -c -o file.o... yes checking if mpifort supports -c -o file.o... (cached) yes checking whether the mpifort linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpifort option to produce PIC... -fno-common checking if mpifort PIC flag -fno-common works... yes checking if mpifort static flag -static works... no checking if mpifort supports -c -o file.o... yes checking if mpifort supports -c -o file.o... (cached) yes checking whether the mpifort linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /bin/date checking for build date... Fri Aug 29 16:54:34 PDT 2025 checking user name... jenkins checking host full OS name and version... darwin21.6.0 checking host cpu... x86_64 checking vendor... apple checking host OS name... darwin21 checking host OS version... 21.6.0 checking host OS architecture... x86_64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... macOS checking if system copy of libc has fmemopen (macOS-only check)... yes checking for Xlib (graphics library)... done checking for MATLAB... yes checking MATLAB's mex compilation flags... done checking for JavaScript... no checking for triangle... yes checking for Boost... yes checking for Boost version... 1.73 checking for Dakota... yes checking for Dakota version... 6.2 checking for Dakota major version... 6 checking for Dakota minor version... 2 checking for Dakota build version... 0 checking for Python... yes checking for Python version... 3.9 checking for Python include directory... /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/include/python3.9 checking for libpython... -L/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/.. -lpython3.9 checking for NumPy version... 2.0.2 checking for NumPy include directory... /Users/jenkins/.venv/issm/lib/python3.9/site-packages/numpy/_core/include checking for Chaco... yes checking for ESMF... no checking for CoDiPack... no checking for tape allocation... no checking for ADOL-C... no checking for ADOL-C version... 2 checking for ATLAS and CBLAS libraries... no checking for GSL... no checking for AMPI... no checking for MeDiPack... no checking for AdjointPETSc... no checking for HDF5 libraries... yes checking for PETSc... yes checking for PETSc version... 3.22 checking whether PETSc is the development version... no checking for PETSc libraries and header files in /Users/jenkins/workspace/macOS-Intel-Solid_Earth/externalpackages/petsc/install... done checking for MPI... yes checking for SCOTCH... no checking for METIS... yes checking for ParMETIS... yes checking for TAO... yes checking for M1QN3... yes checking for PROJ... yes checking for shapelib... no checking for ScaLAPACK... yes checking for BLAS/LAPACK... yes checking for MKL... no checking for PlaLAPACK... no checking for MPLAPACK... no checking for MUMPS... yes checking for BLACS... no checking for HYPRE... no checking for Prometheus... no checking for SEMIC... yes checking for SPAI... no checking for SuperLU... no checking for SPOOLES... no checking for PaStiX... no checking for ml... no checking for UMFPACK... no checking for libm... done checking for MATH77... no checking for Fortran compilation... yes checking for Fortran library... done checking for NeoPZ... no checking for Gmsh... no checking for BAMG capability compilation... yes checking for ice/ocean coupling capability compilation... no checking for kriging capability compilation... yes checking for HydrologyTws capability compilation... yes checking for AdjointBalancethickness2 capability compilation... yes checking for AdjointBalancethickness capability compilation... yes checking for AdjointHoriz capability compilation... yes checking for Age capability compilation... yes checking for Balancethickness2 capability compilation... yes checking for Balancethickness capability compilation... yes checking for BalancethicknessSoft capability compilation... yes checking for Balancevelocity capability compilation... yes checking for DamageEvolution capability compilation... yes checking for Debris capability compilation... yes checking for DepthAverage capability compilation... yes checking for Enthalpy capability compilation... yes checking for Esa capability compilation... yes checking for Extrapolation capability compilation... yes checking for ExtrudeFromBase capability compilation... yes checking for ExtrudeFromTop capability compilation... yes checking for FreeSurfaceBase capability compilation... yes checking for FreeSurfaceTop capability compilation... yes checking for GLheightadvection capability compilation... yes checking for HydrologyDCEfficient capability compilation... yes checking for HydrologyDCInefficient capability compilation... yes checking for HydrologyGlaDS capability compilation... yes checking for HydrologyPism capability compilation... yes checking for HydrologyShakti capability compilation... yes checking for HydrologyShreve capability compilation... yes checking for HydrologyArmapw capability compilation... yes checking for L2ProjectionBase capability compilation... yes checking for L2ProjectionEPL capability compilation... yes checking for Levelset capability compilation... yes checking for Love capability compilation... yes checking for Masstransport capability compilation... yes checking for Mmemasstransport capability compilation... yes checking for Melting capability compilation... yes checking for Oceantransport capability compilation... yes checking for Recovery capability compilation... yes checking for Sampling capability compilation... yes checking for Sealevelchange capability compilation... yes checking for Smb capability compilation... yes checking for Smooth capability compilation... yes checking for Stressbalance capability compilation... yes checking for StressbalanceSIA capability compilation... yes checking for StressbalanceVertical capability compilation... yes checking for Thermal capability compilation... yes checking for UzawaPressure capability compilation... yes checking for number of threads... 4 checking for 64-bit indices... 0 checking consistency between all external packages... done checking for C++ optimization flags... DEPRECATED checking that generated files are newer than configure... done configure: creating ./config.status /bin/sh ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/c/Makefile config.status: creating src/m/Makefile config.status: creating src/wrappers/Makefile config.status: creating src/wrappers/python/Makefile config.status: creating src/wrappers/matlab/Makefile config.status: creating src/wrappers/javascript/Makefile config.status: creating ./config.h config.status: executing depfiles commands config.status: executing libtool commands (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /Users/jenkins/workspace/macOS-Intel-Solid_Earth/aux-config/missing autoheader) rm -f stamp-h1 touch config.h.in cd . &&