![[Jenkins]](/jenkins/static/274749d3/images/svgs/logo.svg){kind=logo}
Started by an SCM change Running as SYSTEM Building remotely on macOS-Silicon (mac) in workspace /Users/jenkins/workspace/macOS-Silicon-Examples Updating https://issm.ess.uci.edu/svn/issm/issm/trunk-jpl@HEAD at revision HEAD --quiet Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ At revision 28241 Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ [macOS-Silicon-Examples] $ /bin/bash /var/folders/mx/mr9ch0gx2qq_tty2dtgrjcn40000gp/T/jenkins5391767245122443415.sh Cleaning up execution directory ====================================================== Determining Installation type ====================================================== Previous revision number: 28240 Current revision number: 28241 List of updated files /issm/trunk-jpl/Makefile.am Determining installation type -- checking for changed externalpackages... no -- checking for reconfiguration... yes -- checking for recompilation... yes Recording current svn version: 28241 ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping gsl ====================================================== ====================================================== Skipping boost ====================================================== ====================================================== Skipping dakota ====================================================== ====================================================== Skipping chaco ====================================================== ====================================================== Skipping curl ====================================================== ====================================================== Skipping hdf5 ====================================================== ====================================================== Skipping netcdf ====================================================== ====================================================== Skipping proj ====================================================== ====================================================== Skipping gdal ====================================================== ====================================================== Skipping gshhg ====================================================== ====================================================== Skipping gmt ====================================================== ====================================================== Skipping gmsh ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping m1qn3 ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Cleaning up and reconfiguring ====================================================== CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /Users/jenkins/workspace/macOS-Silicon-Examples/aux-config/missing aclocal-1.16 -I m4 cd . && /bin/sh /Users/jenkins/workspace/macOS-Silicon-Examples/aux-config/missing automake-1.16 --foreign CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /Users/jenkins/workspace/macOS-Silicon-Examples/aux-config/missing autoconf /bin/sh ./config.status --recheck running CONFIG_SHELL=/bin/sh /bin/sh ./configure --prefix=/Users/jenkins/workspace/macOS-Silicon-Examples --disable-static --enable-development --enable-debugging --with-numthreads=8 --with-matlab-dir=/Applications/MATLAB_R2023b.app --with-fortran-lib=-L/opt/homebrew/lib/gcc/current -lgfortran --with-mpi-include=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install/include --with-mpi-libflags=-L/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort --with-blas-lapack-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-metis-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-parmetis-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-scalapack-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-mumps-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-hdf5-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/hdf5/install --with-petsc-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install --with-gsl-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/gsl/install --with-boost-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/boost/install --with-dakota-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/dakota/install --with-chaco-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/chaco/install --with-proj-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/proj/install --with-triangle-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/triangle/install --with-m1qn3-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/m1qn3/install --with-semic-dir=/Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/semic/install LDFLAGS= -Wl,-ld_classic --no-create --no-recursion configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... arm-apple-darwin23.4.0 checking host system type... arm-apple-darwin23.4.0 checking target system type... arm-apple-darwin23.4.0 checking for icc... no checking for cl... no checking for icl... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for icpc... no checking for cl... no checking for icl... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./aux-config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /opt/homebrew/Cellar/gnu-sed/4.9/libexec/gnubin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 786432 checking how to convert arm-apple-darwin23.4.0 file names to arm-apple-darwin23.4.0 format... func_convert_file_noop checking how to convert arm-apple-darwin23.4.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... ld: warning: -single_module is obsolete no checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin23.4.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin23.4.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin23.4.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin23.4.0 dyld checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /bin/date checking for build date... Tue Apr 30 14:43:51 PDT 2024 checking user name... jenkins checking host full OS name and version... darwin23.4.0 checking host cpu... arm checking vendor... apple checking host OS name... darwin23 checking host OS version... 23.4.0 checking host OS architecture... arm64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking if this is a Mac build... yes checking if system copy of libc has fmemopen... yes checking for vendor compilers... done checking if this is a MSVC (Windows) build... no checking if this is a MSYS2 (Windows) build... no checking for MATLAB... yes checking MATLAB's mex compilation flags... done checking for JavaScript... no checking for triangle... yes checking for Boost... yes checking for Boost version... 1.73 checking for Dakota... yes checking for Dakota version... 6.2 checking for Dakota major version... 6 checking for Dakota minor version... 2 checking for Dakota build version... 0 checking for Python... no checking for python-numpy... no checking for Chaco... yes checking for ESMF... no checking for CoDiPack... no checking for tape allocation... no checking for ADOL-C... no checking for ADOL-C version... 2 checking for ADIC2... no checking for ATLAS and CBLAS libraries... no checking for GSL... yes checking for AMPI... no checking for Adjoint MPI... no checking for MeDiPack... no checking for HDF5 libraries... yes checking for PETSc... yes checking for PETSc version... 3.20 checking whether PETSc is the development version... no checking for PETSc libraries and header files in /Users/jenkins/workspace/macOS-Silicon-Examples/externalpackages/petsc/install... done checking for MPI... yes checking for SCOTCH... no checking for METIS... yes checking for ParMETIS... yes checking for TAO... yes checking for M1QN3... yes checking for PROJ... yes checking for SLEPc... no checking for shapelib... no checking for ScaLAPACK... yes checking for BLAS/LAPACK... yes checking for MKL... no checking for PlaLAPACK... no checking for MPLAPACK... no checking for MUMPS... yes checking for BLACS... no checking for HYPRE... no checking for Prometheus... no checking for SEMIC... yes checking for SPAI... no checking for SuperLU... no checking for SPOOLES... no checking for PaStiX... no checking for ml... no checking for UMFPACK... no checking for libm... done checking for MATH77... no checking for Fortran compilation... yes checking for Fortran library... done checking for Xlib (graphics library)... done checking for MeteoIO... no checking for SNOWPACK... no checking for NeoPZ... no checking for Gmsh... no checking for BAMG capability compilation... yes checking for ice/ocean coupling capability compilation... no checking for kml capability compilation... no checking for kriging capability compilation... yes checking for HydrologyTws capability compilation... yes checking for AdjointBalancethickness2 capability compilation... yes checking for AdjointBalancethickness capability compilation... yes checking for AdjointHoriz capability compilation... yes checking for Age capability compilation... yes checking for Balancethickness2 capability compilation... yes checking for Balancethickness capability compilation... yes checking for BalancethicknessSoft capability compilation... yes checking for Balancevelocity capability compilation... yes checking for DamageEvolution capability compilation... yes checking for Debris capability compilation... yes checking for DepthAverage capability compilation... yes checking for Enthalpy capability compilation... yes checking for Esa capability compilation... yes checking for Extrapolation capability compilation... yes checking for ExtrudeFromBase capability compilation... yes checking for ExtrudeFromTop capability compilation... yes checking for FreeSurfaceBase capability compilation... yes checking for FreeSurfaceTop capability compilation... yes checking for GLheightadvection capability compilation... yes checking for HydrologyDCEfficient capability compilation... yes checking for HydrologyDCInefficient capability compilation... yes checking for HydrologyGlaDS capability compilation... yes checking for HydrologyPism capability compilation... yes checking for HydrologyShakti capability compilation... yes checking for HydrologyShreve capability compilation... yes checking for HydrologyArmapw capability compilation... yes checking for L2ProjectionBase capability compilation... yes checking for L2ProjectionEPL capability compilation... yes checking for Levelset capability compilation... yes checking for Love capability compilation... yes checking for Masstransport capability compilation... yes checking for Melting capability compilation... yes checking for Oceantransport capability compilation... yes checking for Recovery capability compilation... yes checking for Sampling capability compilation... yes checking for Sealevelchange capability compilation... yes checking for Smb capability compilation... yes checking for Smooth capability compilation... yes checking for Stressbalance capability compilation... yes checking for StressbalanceSIA capability compilation... yes checking for StressbalanceVertical capability compilation... yes checking for Thermal capability compilation... yes checking for UzawaPressure capability compilation... yes checking for iOS compilation... no checking for Android capability compilation... no checking with Android Native Development Kit (NDK)... no checking for C++ optimization flags... -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ checking for number of threads... 8 checking for 64-bit indices... 0 checking consistency between all external packages... done checking that generated files are newer than configure... done configure: creating ./config.status /bin/sh ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/c/Makefile config.status: creating src/wrappers/Makefile config.status: creating src/wrappers/python/Makefile config.status: creating src/wrappers/matlab/Makefile config.status: creating src/wrappers/javascript/Makefile config.status: creating src/m/Makefile config.status: creating ./config.h config.status: executing depfiles commands config.status: executing libtool commands Making uninstall in src Making uninstall in c ( cd '/Users/jenkins/workspace/macOS-Silicon-Examples/bin' &&