Started by GitHub push by TidbitSoftware Running as SYSTEM Building remotely on Debian_12-VM (debian linux) in workspace /home/jenkins/workspace/Debian_Linux-JavaScript The recommended git tool is: NONE > git rev-parse --resolve-git-dir /home/jenkins/workspace/Debian_Linux-JavaScript/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.39.5' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision 1ead90845164b3607618f250d0dfb72f5b4a3628 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 1ead90845164b3607618f250d0dfb72f5b4a3628 # timeout=10 Commit message: "Use system/developer copy of libblas/lapack on macOS" > git rev-list --no-walk a9631cdc27544ebede68754b0bddb5ad37b28706 # timeout=10 [Debian_Linux-JavaScript] $ /bin/bash /tmp/jenkins17694146448363129111.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== List of changed files --------------------- etc/environment.sh externalpackages/petsc/install-3.23-linux.sh externalpackages/petsc/install-3.23-mac.sh -- checking for changed externalpackages... yes -- checking for reconfiguration... yes -- checking for recompilation... yes /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 329: syntax error in conditional expression ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping emscripten ====================================================== ====================================================== Skipping gsl ====================================================== ====================================================== Installing triangle ====================================================== /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 14: syntax error near unexpected token `-n' /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 14: `if [[ -n "$ZSH_VERSION" ]]; then' ====================================================== Installing shell2junit ====================================================== /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 329: syntax error in conditional expression /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 14: syntax error near unexpected token `-n' /home/jenkins/workspace/Debian_Linux-JavaScript/etc/environment.sh: line 14: `if [[ -n "$ZSH_VERSION" ]]; then' Setting up EMSDK environment (suppress these messages with EMSDK_QUIET=1) Adding directories to PATH: PATH += /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install PATH += /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install/upstream/emscripten PATH += /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install/node/22.16.0_64bit/bin Setting environment variables: PATH = /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install:/home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install/upstream/emscripten:/home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install/node/22.16.0_64bit/bin:/home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-JavaScript/scripts EMSDK = /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install EMSDK_NODE = /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/emscripten/install/node/22.16.0_64bit/bin/node ====================================================== Cleaning up and reconfiguring ====================================================== make: *** No rule to make target 'uninstall'. Stop. make: *** No rule to make target 'distclean'. Stop. autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: configure.ac: creating directory ./aux-config autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'. libtoolize: copying file './aux-config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: running: /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/autotools/install/bin/autoconf --force autoreconf: running: /home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/autotools/install/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:27: installing './aux-config/ar-lib' configure.ac:17: installing './aux-config/compile' configure.ac:14: installing './aux-config/config.guess' configure.ac:14: installing './aux-config/config.sub' configure.ac:24: installing './aux-config/install-sh' configure.ac:24: installing './aux-config/missing' src/c/Makefile.am: installing './aux-config/depcomp' autoreconf: Leaving directory `.' configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether emcc accepts -g... yes checking for emcc option to accept ISO C89... none needed checking whether emcc understands -c and -o together... yes checking how to run the C preprocessor... emcc -E checking whether we are using the GNU C++ compiler... yes checking whether em++ accepts -g... yes checking for mpifort... no checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for mpifort... no checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of emcc... gcc3 checking dependency style of em++... gcc3 checking whether make supports nested variables... (cached) yes checking the archiver (emar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by emcc... /bin/ld checking if the linker (/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... emranlib checking command to parse /usr/bin/nm -B output from emcc object... failed checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if emcc supports -fno-rtti -fno-exceptions... yes checking for emcc option to produce PIC... -fPIC -DPIC checking if emcc PIC flag -fPIC -DPIC works... yes checking if emcc static flag -static works... yes checking if emcc supports -c -o file.o... yes checking if emcc supports -c -o file.o... (cached) yes checking whether the emcc linker (/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... em++ -E checking for ld used by em++... /bin/ld checking if the linker (/bin/ld) is GNU ld... yes em++: error: no input files checking whether the em++ linker (/bin/ld) supports shared libraries... yes checking for em++ option to produce PIC... -fPIC -DPIC checking if em++ PIC flag -fPIC -DPIC works... yes checking if em++ static flag -static works... yes checking if em++ supports -c -o file.o... yes checking if em++ supports -c -o file.o... (cached) yes checking whether the em++ linker (/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /usr/bin/date checking for build date... Wed Sep 3 10:29:09 PDT 2025 checking user name... jenkins checking host full OS name and version... linux checking host cpu... x86_64 checking vendor... pc checking host OS name... linux checking host OS version... 6.1.0-37-amd64 checking host OS architecture... x86_64 checking for debugging support... no checking for development support... no checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... Linux checking for Xlib (graphics library)... done checking for MATLAB... no checking for JavaScript... yes checking for triangle... configure: error: Triangle directory provided (/home/jenkins/workspace/Debian_Linux-JavaScript/externalpackages/triangle/install) does not exist! ISSM configuration failed (see options below) \ --prefix=${ISSM_DIR} \ --disable-shared \ --with-javascript \ --without-fortran \ --without-Sealevelchange \ --without-Love \ --without-kriging \ --with-gsl-dir="${ISSM_DIR}/externalpackages/gsl/install" \ --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \ ISSM configuration failed! /tmp/jenkins17694146448363129111.sh: line 26: ./bin/issm-binaries.js: No such file or directory Build step 'Execute shell' marked build as failure Recording test results Finished: FAILURE