Started by GitHub push by TidbitSoftware Running as SYSTEM Building remotely on Windows_10-MSYS2-MinGW-VM (mingw win) in workspace C:\Users\jenkins\Jenkins\workspace\Windows-Basic [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE Cloning the remote Git repository Cloning repository git@github.com:ISSMteam/ISSM.git > git init C:\Users\jenkins\Jenkins\workspace\Windows-Basic # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.55.0' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file You're using 'Known hosts file' strategy to verify ssh host keys, but your known_hosts file does not exist, please go to 'Manage Jenkins' -> 'Security' -> 'Git Host Key Verification Configuration' and configure host key verification. > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse "refs/remotes/origin/main^{commit}" # timeout=10 Checking out Revision fc91b05fd9367e01f6d0185d91278c8d0bc816d7 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f fc91b05fd9367e01f6d0185d91278c8d0bc816d7 # timeout=10 Commit message: "Some changes and some reversions for Windows (still not passing all tests)" > git rev-list --no-walk 0b8f332d121a5464339f0b7cfe0e478cdcf1821f # timeout=10 [Windows-Basic] $ C:\msys64\usr\bin\bash C:\Users\jenkins\jenkins7694036491329887746.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== Fresh copy of repository; building everything -- checking for changed externalpackages... yes -- checking for reconfiguration... yes -- checking for recompilation... yes ====================================================== Installing petsc ====================================================== ====================================================== Installing triangle ====================================================== ====================================================== Installing shell2junit ====================================================== ====================================================== Cleaning up and reconfiguring ====================================================== make: *** No rule to make target 'uninstall'. Stop. make: *** No rule to make target 'distclean'. Stop. autoreconf-2.73: export WARNINGS= autoreconf-2.73: Entering directory '.' autoreconf-2.73: configure.ac: no obvious need to run autopoint autoreconf-2.73: running: aclocal --force -I m4 autoreconf-2.73: configure.ac: tracing autoreconf-2.73: configure.ac: creating directory ./aux-config autoreconf-2.73: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'. libtoolize: copying file './aux-config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf-2.73: configure.ac: not using Intltool autoreconf-2.73: configure.ac: not using Gtkdoc autoreconf-2.73: configure.ac: no need to run autopoint (confirmed) autoreconf-2.73: running: aclocal --force -I m4 autoreconf-2.73: running: /usr/bin/autoconf-2.73 --force autoreconf-2.73: running: /usr/bin/autoheader-2.73 --force autoreconf-2.73: running: automake --add-missing --copy --force-missing configure.ac:35: installing './aux-config/ar-lib' configure.ac:25: installing './aux-config/compile' configure.ac:22: installing './aux-config/config.guess' configure.ac:22: installing './aux-config/config.sub' configure.ac:32: installing './aux-config/install-sh' configure.ac:32: installing './aux-config/missing' src/c/Makefile.am: installing './aux-config/depcomp' autoreconf-2.73: './aux-config/config.sub' is updated autoreconf-2.73: './aux-config/config.guess' is updated autoreconf-2.73: configure.ac: not running make: --make not given autoreconf-2.73: Leaving directory '.' configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 2026.3 configuration = configure: ============================================================================ checking build system type... x86_64-pc-mingw64 checking host system type... x86_64-pc-mingw64 checking target system type... x86_64-pc-mingw64 checking for mpicc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mpicc accepts -g... yes checking for mpicc option to enable C23 features... unsupported checking for mpicc option to enable C11 features... none needed checking whether mpicc understands -c and -o together... yes checking how to run the C preprocessor... mpicc -E checking for mpicxx... mpicxx checking whether the compiler supports GNU C++... yes checking whether mpicxx accepts -g... yes checking for mpifort... mpifort checking whether the compiler supports GNU Fortran 77... yes checking whether mpifort accepts -g... yes checking for mpifort... mpifort checking whether the compiler supports GNU Fortran... yes checking whether mpifort accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '197610' is supported by ustar format... yes checking whether GID '197121' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking dependency style of mpicc... gcc3 checking dependency style of mpicxx... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by mpicc... C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe checking if the linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /mingw64/bin/nm -B checking the name lister (/mingw64/bin/nm -B) interface... BSD nm checking whether ln -s works... no, using cp -pR checking the maximum length of command line arguments... 8192 checking how to convert x86_64-pc-mingw64 file names to x86_64-pc-mingw64 format... func_convert_file_msys_to_w32 checking how to convert x86_64-pc-mingw64 file names to toolchain format... func_convert_file_msys_to_w32 checking for C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for ranlib... ranlib checking for archiver @FILE support... @ checking for strip... strip checking command to parse /mingw64/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... no checking for as... as checking for dlltool... (cached) dlltool checking for objdump... (cached) objdump checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -DDLL_EXPORT -DPIC checking if mpicc PIC flag -DDLL_EXPORT -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe checking if the linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) is GNU ld... yes checking whether the mpicxx linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) supports shared libraries... yes checking for mpicxx option to produce PIC... -DDLL_EXPORT -DPIC checking if mpicxx PIC flag -DDLL_EXPORT -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mpifort option to produce PIC... -DDLL_EXPORT checking if mpifort PIC flag -DDLL_EXPORT works... yes checking if mpifort static flag -static works... yes checking if mpifort supports -c -o file.o... yes checking if mpifort supports -c -o file.o... (cached) yes checking whether the mpifort linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for mpifort option to produce PIC... -DDLL_EXPORT checking if mpifort PIC flag -DDLL_EXPORT works... yes checking if mpifort static flag -static works... yes checking if mpifort supports -c -o file.o... yes checking if mpifort supports -c -o file.o... (cached) yes checking whether the mpifort linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /usr/bin/date checking for build date... Sat Aug 29 18:59:17 PDT 2026 checking user name... jenkins checking host full OS name and version... mingw64 checking host cpu... x86_64 checking vendor... pc checking host OS name... mingw64 checking host OS version... 64 checking host OS architecture... x86_64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... Windows (MSYS2 MinGW) checking for Xlib (graphics library)... done checking for MATLAB... yes checking MATLAB's mex compilation flags... done checking for JavaScript... no checking for triangle... yes checking for Boost... no checking for Dakota... no checking for Python... no checking for Python... no checking for python-numpy... no checking for Chaco... no checking for ESMF... no checking for CoDiPack... no checking for tape allocation... no checking for ADOL-C... no checking for ADOL-C version... 2 checking for ATLAS and CBLAS libraries... no checking for GSL... no checking for AMPI... no checking for MeDiPack... no checking for AdjointPETSc... no checking for HDF5 libraries... no checking for PETSc... yes checking for PETSc version... 3.25 checking whether PETSc is the development version... no checking for PETSc libraries and header files in /c/Users/jenkins/Jenkins/workspace/Windows-Basic/externalpackages/petsc/install... done checking for MPI... configure: error: Count not find mpi.h in /c/Users/jenkins/Jenkins/workspace/Windows-Basic/externalpackages/shared/msmpi/install/include! ISSM configuration failed (see options below) \ --prefix=${ISSM_DIR} \ --enable-development \ --enable-debugging \ --with-numthreads=4 \ --with-matlab-dir="${MATLAB_PATH}" \ --with-mpi-include="${MSMPI_ROOT}/include" \ --with-mpi-libdir="-Wl,-L${MSMPI_ROOT}/lib" \ --with-mpi-libflags="-Wl,-lmsmpi" \ --with-fortran-lib="-Wl,-L/c/msys64/mingw64/lib -Wl,-lgfortran -Wl,-lquadmath" \ --with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-parmetis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-blas-lapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-scalapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \ --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \ ISSM configuration failed! Build step 'Execute shell' marked build as failure Recording test results Finished: FAILURE