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#35 (Jul 10, 2026, 5:37:00 PM)

Reducing list of manually-supplied library link flags now that we are using newer pacman-supplied copy of MS-MPI

34657535+TidbitSoftware at 7:45 PM 7/3/26

Need quadmath library

34657535+TidbitSoftware at 10:51 PM 7/3/26

BUG: tiny fix, missing the 3 parameter case

f007fk5 at 2:26 PM 7/4/26

CHG: cleanup: removing Radar cost function and Enums, and removing triangle.h from toolkits

mathieu.morlighem at 9:07 AM 7/6/26

CHG: no more radar cost function

mathieu.morlighem at 9:14 AM 7/6/26

CHG: removing header file

mathieu.morlighem at 2:33 AM 7/9/26

CHG: added example

Mathieu Morlighem at 2:34 AM 7/9/26

CHG: relaxed tolerances

mathieu.morlighem at 2:52 AM 7/9/26

CHG: Remove user's specific.

inwoo0415 at 6:23 PM 7/9/26

CHG: Update default parameters in ismip7 ocean forcings.

inwoo0415 at 6:24 PM 7/9/26

CHG: Support string cell arrays for colorbar ticks. Additionally, generate numeric tick labels on a single line.

inwoopark0415 at 11:44 PM 7/9/26

CHG: adding HydrologyMoulinInputEnum as control and a couple of estetic changes

Mathieu Morlighem at 3:15 AM 7/10/26

BUG: when copying a hook, we should NOT copy the pointers because other datasets are already being copied and we don't want to point to obects of the original dataset

Mathieu Morlighem at 3:31 AM 7/10/26

BUG: now loads need to be reconfigured after being copied

Mathieu Morlighem at 4:01 AM 7/10/26

#34 (Jul 3, 2026, 5:37:00 PM)

CHG: removed lines not used

helene.l.seroussi at 3:25 PM 6/29/26

NEW: added module for ocean connectivity and ice shelf melt applied only to areas connected to the ocean

helene.l.seroussi at 4:26 AM 6/30/26

FIX: need new nomelt_under_lakes for vertical analysis

helene.l.seroussi at 5:07 AM 6/30/26

FIX: forgot bracket for the check because of nomelt_under_lakes

helene.l.seroussi at 5:20 AM 6/30/26

FIX: fixed new values check in nomeltunderlake for python and js

helene.l.seroussi at 5:54 AM 6/30/26

CHG: interpISMIP7AntarcticaSMB.m - Fix treating nan values in SMB. Also enable to support 'historical' periods.

inwoo0415 at 6:29 AM 6/30/26

BUG: Resolve memory leakage problem in Ismip7FloatingiceMeltingRate.

inwoo0415 at 6:29 AM 6/30/26

Updates for Windows builds after upgrading system copy of Python

34657535+TidbitSoftware at 1:45 PM 7/1/26

CHG: added better error message so that we can remove this function altogether

mathieu.morlighem at 3:41 PM 7/1/26

CHG: minor cosmetics

mathieu.morlighem at 3:41 PM 7/1/26

CHG: minor cosmetics

mathieu.morlighem at 3:41 PM 7/1/26

NEW: adding new way to read and broadcast data from binary file. Until now rank 0 reads and broadcasts entire fields but we sometimes run out of memory for very large fields (e.g., SMB). Instead, rank 0 now creates tailored arrays for each partition and that's what's being send. It does not work yet, this is an intermediary commit for debugging, so this behavior is not yet activated. This will be a long summer project...

mathieu.morlighem at 3:45 PM 7/1/26

NEW: new approach now working and debugged, but not turned on by default

Mathieu Morlighem at 4:36 AM 7/2/26

BUG: only delete rank0_vert_ids if it is not NULL

Mathieu Morlighem at 11:17 AM 7/2/26

CHG: no need to pull C every iteration

Mathieu Morlighem at 3:41 AM 7/3/26

Simplified ISSM and PETSc configs for Windows

34657535+TidbitSoftware at 11:14 AM 7/3/26

Lowering C standard for GCC when compiling Triangle on Windows

34657535+TidbitSoftware at 3:04 PM 7/3/26

#33 (Jun 26, 2026, 5:37:00 PM)

CHG: mech/mechanicalproperties.m updated to ensure that power (n) cannot be of length 1.

benjamingetraer at 10:33 AM 6/22/26

CHG: added RMSEs as J in results

mathieu.morlighem at 10:34 AM 6/23/26

CHG: minor cosmetics for valgrind

Mathieu Morlighem at 10:46 AM 6/23/26

CHG: no need to prescribe 'benchmark','all' when prescriving ids>1000

mathieu.morlighem at 1:16 PM 6/24/26

#32 (Jun 19, 2026, 5:37:00 PM)

CHG: interpISMIP7AntarcticaOcn.m - Fix to check time boundary and update parameters for ISMP7.

inwoo0415 at 4:33 AM 6/13/26

CHG: interpISMIP7AntarcticaSMB.m - Use anomaly values for SMB and reference SMB from RACMO24p1 dataset.

inwoo0415 at 11:12 PM 6/13/26

BUG: Fix bug in interpISMIP7AntarcticaOcn.m.

inwoo0415 at 12:38 AM 6/14/26

CHG: new way of computing RMSEs for nudging

mathieu.morlighem at 10:58 AM 6/18/26

CHG: do we REALLY need VxObsEnum? trying to use InversionVxObs instead, it makes more sense to reuse existing Enums if possible

mathieu.morlighem at 10:58 AM 6/18/26

Update basalforcingsismip6.m to fix wrong default value for 'islocal'

noreply at 7:02 AM 6/19/26

CHG: trying to fix nudging class (needs to pull out fields from md.inversion

Mathieu Morlighem at 7:55 AM 6/19/26

#31 (Jun 12, 2026, 5:37:00 PM)

CHG: clean up comment in GEMB accumulation

95945328+NJSchlegel at 6:24 PM 5/21/26

CHG: fixed dimension problem in nudging scheme

mathieu.morlighem at 4:06 PM 6/6/26

NEW: added GetVectorFromInputsx and UpdateInputFromVector with Lid so that we can do this locally

mathieu.morlighem at 2:29 PM 6/7/26

CHG: minor estaetics

mathieu.morlighem at 2:33 PM 6/7/26

CHG: GEMB read mapping neighbors as double array

95945328+NJSchlegel at 9:17 AM 6/8/26

CHG: added warning when control exceeds parameter_min/max and gradient is 0

mathieu.morlighem at 5:40 PM 6/8/26

CHG: there was a bug when using git difftool (error message complaining about path), this is now fixed

mathieu.morlighem at 3:44 PM 6/9/26

NEW: you can now customize where input files are created using md.settings.stagingpath

mathieu.morlighem at 5:08 AM 6/10/26

mathieu.morlighem at 5:20 AM 6/10/26

Reducing lib flag list so that compiler can find the correct versions on its own.

34657535+TidbitSoftware at 1:10 PM 6/10/26

Reverting lib flags change and rebuilding ext pkgs

34657535+TidbitSoftware at 1:46 PM 6/10/26

NEW: added master flag to not save results in a transient run, needed for nudging

mathieu.morlighem at 6:42 PM 6/11/26

CHG: only save last step

mathieu.morlighem at 6:57 PM 6/11/26

CHG: BasalforcingsPerturbationMeltingRate output is now in m/yr

mathieu.morlighem at 11:25 PM 6/11/26

NEW: added NR test for nudging

mathieu.morlighem at 11:31 PM 6/11/26

CHG: added RMSE's to results as J

mathieu.morlighem at 3:50 PM 6/12/26

#30 (Jun 5, 2026, 5:37:00 PM)

issmversion.py: Fix so docstring is correct and prints version

ken.mankoff at 4:06 AM 6/1/26

export_netCDF.py: Add overwrite keyword

ken.mankoff at 6:44 AM 6/1/26

CHG: shielding seminc from ADOLC

Mathieu Morlighem at 10:11 AM 6/1/26

CHG: moving constant to ifdef

Mathieu Morlighem at 11:28 AM 6/1/26

remove duplicate gadi file from cluster dir

justinkinjun.hew at 4:35 PM 6/1/26

NEW: added cost function 701, divergence^2, to improve model initialization

Mathieu Morlighem at 9:56 AM 6/2/26

CHG: when running valgrind make sure that outlog and errlog are in the right directory

Mathieu Morlighem at 10:04 AM 6/2/26

CHG: need to add a few libraries to LD_LIBRARY_PATH in queue script

Mathieu Morlighem at 10:06 AM 6/2/26

CHG: completing first version of nudging code

mathieu.morlighem at 1:22 PM 6/2/26

CHG: outputing friction automatically

mathieu.morlighem at 1:32 PM 6/2/26

BUG: could not run FS with complete adjoint

mathieu.morlighem at 9:49 PM 6/2/26

CHG: keep code in SI (s) only convert to m/yr in RMSE

mathieu.morlighem at 7:25 PM 6/3/26

CHG: added more options for nudging

mathieu.morlighem at 8:02 PM 6/3/26

CHG: added melt to nudging scheme

Mathieu Morlighem at 5:01 AM 6/5/26

CHG: fixing melt nudging

mathieu.morlighem at 5:15 PM 6/5/26

#29 (Jun 1, 2026, 4:04:59 AM)

Adjusted tolerances

34657535+TidbitSoftware at 6:35 PM 5/22/26

CHG: streamlining QueueScript so that new clusters don't have a ton of code to write

mathieu.morlighem at 4:06 AM 5/24/26

BUG: restored classes/clusters/cluster_defaults.py

mathieu.morlighem at 4:12 AM 5/24/26

CHG: fixing dakota

mathieu.morlighem at 7:30 AM 5/24/26

CHG: gixing dakota version in python

Mathieu Morlighem at 8:18 AM 5/24/26

CHG: fixing dakota

mathieu.morlighem at 12:28 PM 5/24/26

CHG: crop anything outside the data domain when interpolating dHdt

enigne at 6:28 PM 5/24/26

CHG:add options to data loaders to load from specific nc files

enigne at 10:25 PM 5/24/26

CHG: moved SEMIC from externalpackages to C++ in src/c/shared

mathieu.morlighem at 4:42 AM 5/26/26

CHG: SEMIC is not a required external package anymore

mathieu.morlighem at 7:37 AM 5/26/26

CHG: missing header file to get machine eps

mathieu.morlighem at 7:50 AM 5/26/26

CHG: replaced double by IssmDouble for CoDiPack

mathieu.morlighem at 8:06 AM 5/26/26

BUG: problem recasting IssmDouble to int

Mathieu Morlighem at 9:20 AM 5/26/26

CHG: updating now that semic and m1qn3 are natively in ISSM

Mathieu Morlighem at 10:00 AM 5/26/26

CHG: Now, a unit for TotalHydrologyFlux at grounding line is Gt yr-1.

inwoo0415 at 10:43 PM 5/27/26

BUG: Fix typos....

inwoo0415 at 12:24 AM 5/28/26

CHG: processdata.py - Fix treating element dataset.

inwoo0415 at 1:16 AM 5/28/26

CHG: cmaptools.py - Add functionality to handle LinearSegmentedColormap and string.

inwoo0415 at 10:31 PM 5/31/26

CHG: Fix typos.

inwoo0415 at 10:55 PM 5/31/26

BUG: Fix typos.

inwoo0415 at 10:56 PM 5/31/26

#28 (May 22, 2026, 6:11:08 PM)

NEW: added clusters/unity.m new unity cluster

mathieu.morlighem at 4:26 PM 5/17/26

NEW: consolidated read_netCDF/write_netCDF should now be more robust:

Mathieu Morlighem at 4:30 PM 5/17/26

CHG: removing extraneous printf

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: removing extraneous printf

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: streamlining generic queueing script

Mathieu Morlighem at 4:34 PM 5/17/26

CHG: moving old code to OLD to avoid confusion

Mathieu Morlighem at 4:44 PM 5/17/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

inwoo0415 at 7:14 AM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

mansakrishna23 at 1:43 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

Mathieu Morlighem at 5:15 PM 5/18/26

CHG: these classes do not have a port property, replace with 0

Mathieu Morlighem at 5:20 PM 5/18/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

inwoo0415 at 6:21 PM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

inwoo0415 at 6:22 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

inwoo0415 at 6:22 PM 5/18/26

CHG: plot_gridded.py - Clean up code and fix bug in getcolormap.

inwoo0415 at 6:30 PM 5/18/26

CHG: get status from copyfile so that MATLAB does not error out, and display a warning instead

mathieu.morlighem at 9:36 AM 5/19/26

CHG: Synchronize Matlab > Python. Display a warning message if we cannot copy the file.

inwoo0415 at 6:39 PM 5/19/26

CHG: Fix minor.

inwoo0415 at 6:41 PM 5/19/26

Adjusted tolerances

34657535+TidbitSoftware at 7:53 PM 5/19/26

CHG: Fix minor.

inwoo0415 at 11:01 PM 5/19/26

CHG: a lot of code in clusters is repetitive, move Upload/Launch/Download in cluster_defaults to simplify the implementation of new cluster classes

mathieu.morlighem at 5:47 AM 5/20/26

CHG: streamlining all cluster classes with new defaults

mathieu.morlighem at 5:02 AM 5/21/26

NEW: adding inversionnudging for Tim's work

mathieu.morlighem at 9:00 AM 5/21/26

CHG: no need to get min/max parameters when creating new elements

Mathieu Morlighem at 9:19 AM 5/21/26

CHG: we do not need InputUpdateFromIoModel anymore

Mathieu Morlighem at 9:27 AM 5/21/26

CHG: ptol is too high in GEMB

95945328+NJSchlegel at 4:32 PM 5/21/26

CHG: GEMB test removal of P tol in accumulation

95945328+NJSchlegel at 6:02 PM 5/21/26

CHG: working on nudging method

Mathieu Morlighem at 6:13 PM 5/21/26

CHG: streamlining cluster classes

mathieu.morlighem at 4:55 AM 5/22/26

CHG: port number should be an integer, not a string

mathieu.morlighem at 4:57 AM 5/22/26

BUG: fixing CoDiPack by converting PDouble to Double

Mathieu Morlighem at 5:52 AM 5/22/26

CHG: removing LaunchQueueJobIceOcean, we can call the usual LaunchQueueJob

mathieu.morlighem at 6:44 AM 5/22/26

Testing if use of new generic class will suffice for binaries

34657535+TidbitSoftware at 11:08 AM 5/22/26

Removed static version of generic class; adjusted tolerances

34657535+TidbitSoftware at 4:37 PM 5/22/26

Forgot to update Python binaries after removing static generic cluster class

34657535+TidbitSoftware at 4:59 PM 5/22/26

Also needed to clean up import and check on static generic class in waitonlock

34657535+TidbitSoftware at 5:01 PM 5/22/26

#27 (May 15, 2026, 5:37:00 PM)

BUG: Fix bugs in interpISMIP7AntarcticaSMB.m.

inwoo0415 at 6:43 PM 5/10/26

CHG: making Bamg more robust to produce the same mesh across platform. Right now meshes are slightly different on mac and linux. This commit should fix it

mathieu.morlighem at 4:58 AM 5/11/26

CHG: updated Archives now that bamg is more portable

Mathieu Morlighem at 5:25 AM 5/11/26

CHG: adding more tests to Mac M now that bamg is more portable

Mathieu Morlighem at 5:28 AM 5/11/26

CHG: updated archives now that bamg is more robust

Mathieu Morlighem at 5:51 AM 5/11/26

CHG: still erroring out on bamg adaptive mesh

Mathieu Morlighem at 9:16 AM 5/11/26

CHG: excluding test703 again because it uses bamg

Mathieu Morlighem at 9:38 AM 5/11/26

CHG: offset message to be consistent with other notifications

mathieu.morlighem at 9:40 AM 5/11/26

NEW: now create files directly in execution/ instead of current directory to avoid clutter and overwrites

mathieu.morlighem at 1:03 PM 5/11/26

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 7:23 PM 5/11/26

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 8:35 PM 5/11/26

BUG: handle case when executionpath is not /Users/mmorligh/Desktop/ISSM/execution

mathieu.morlighem at 4:56 AM 5/12/26

CHG: better way to handle local vs remote execution

mathieu.morlighem at 7:02 AM 5/12/26

CHG: trying to fix windows with the new format of execution/input files

mathieu.morlighem at 7:27 AM 5/12/26

CHG: fixing windows

mathieu.morlighem at 10:20 AM 5/12/26

m1qn3 is now integrated

34657535+TidbitSoftware at 1:31 PM 5/12/26

Removing m1qn3 fence; formatting

34657535+TidbitSoftware at 4:03 PM 5/12/26

m1qn3 is now integrated

34657535+TidbitSoftware at 5:00 PM 5/12/26

CHG: in some cases the new m1qn3 would fail with exit code 7, this should now be fixed

mathieu.morlighem at 4:45 AM 5/13/26

CHG: minor update

mathieu.morlighem at 4:46 AM 5/13/26

CHG: trying to fix dakota now that files are explicitly in execution

mathieu.morlighem at 5:41 AM 5/13/26

NEW:preparing a GNN based stressbalance emulator

55120383+yinmin-liu at 9:39 AM 5/13/26

frontera, andes settings

mansakrishna23 at 12:59 PM 5/13/26

CHG: use Dakota's output manager to figure out where to read and write files

mathieu.morlighem at 4:36 AM 5/14/26

CHG: added check to warn users when execution dir needs to be cleaned up

mathieu.morlighem at 4:56 AM 5/14/26

BUG: adding default pertubration melt for spatial linear

mansakrishna23 at 12:39 PM 5/14/26

CHG: make sure to save outlog and errlog in execution directory if launched from another directory (no more cd)

mansakrishna23 at 12:40 PM 5/14/26

Delete src/m/andes_settings.m

noreply at 1:24 PM 5/14/26

Delete src/m/frontera_settings.m

noreply at 1:24 PM 5/14/26

Restore MATLAB export_netCDF.m

noreply at 5:16 PM 5/14/26

CHG: eliminating m1qn3 from Github's CI

mathieu.morlighem at 9:53 AM 5/15/26

CHG: now call MAR-IA once per processor instead of per element

55120383+yinmin-liu at 10:51 AM 5/15/26

#26 (May 8, 2026, 5:37:00 PM)

CHG: add GEMB mapping with neighbors for interpolation

95945328+NJSchlegel at 4:28 PM 5/1/26

CHG: add static cast to GEMB mapping neighbor indices

95945328+NJSchlegel at 4:56 PM 5/1/26

CHG: add static cast to GEMB double to int mapping neighbor indices

95945328+NJSchlegel at 6:04 PM 5/1/26

CHG: GEMB mapping casting check

95945328+NJSchlegel at 6:44 PM 5/1/26

CHG: Fix indent in interpISMIP7AntarcticaOcn.m.

inwoo0415 at 10:25 PM 5/1/26

NEW: Initialize interpISMIP7AntarcticaSMB.m function.

inwoo0415 at 10:25 PM 5/1/26

CHG: add default emissiving to GEMB and add option 3 for te change with melt present

inwoo0415 at 10:30 PM 5/1/26

CHG: Add a new feature to basalforcingsismip7. Introduce the islocal parameter; however, its definition has not yet been determined.

inwoo0415 at 10:42 PM 5/1/26

CHG: plotmodel.py - Enable to control axes pad.

inwoo0415 at 10:55 PM 5/1/26

CHG: make GEMB mapped neighbors ints

95945328+NJSchlegel at 11:27 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:33 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:34 AM 5/2/26

Use get method to avoid square brackets (treated as quotes by Autom4ke) entirely.

34657535+TidbitSoftware at 1:34 PM 5/2/26

Correcting another Python lib/header discovery command

34657535+TidbitSoftware at 1:38 PM 5/2/26

CHG: updated date in copyright

mathieu.morlighem at 2:12 PM 5/3/26

CHG: style fix - removed commas at the end of if/for/while

mathieu.morlighem at 2:15 PM 5/3/26

CHG: fixed some typos

mathieu.morlighem at 2:24 PM 5/3/26

CHG: trying to fix AD

mathieu.morlighem at 6:24 PM 5/3/26

CHG: testing adThresh in GEMB nightly 258

95945328+NJSchlegel at 8:47 AM 5/4/26

CHG: Test eIdx settings in GEMB test 258

95945328+NJSchlegel at 9:22 AM 5/4/26

CHG: GEMB mapping fix AD and add mapping test if eIdx

95945328+NJSchlegel at 9:45 AM 5/4/26

CHG: GEMB lower tol for eIdx

95945328+NJSchlegel at 10:06 AM 5/4/26

CHG: clarify GEMB class mapping comments

95945328+NJSchlegel at 10:41 AM 5/4/26

CHG: fetch lon and lat when using SMBemulator

55120383+yinmin-liu at 2:19 PM 5/4/26

CHG: updated variable Enum names of SMB emulator

55120383+yinmin-liu at 2:22 PM 5/4/26

CHG: changed mass balance scaling to day2second

55120383+yinmin-liu at 2:22 PM 5/4/26

Adjusted tolerances

34657535+TidbitSoftware at 6:48 PM 5/4/26

NEW: added C++ version of M1QN3, more to come

mathieu.morlighem at 4:27 AM 5/5/26

CHG: getting rid of all gotos

mathieu.morlighem at 4:59 AM 5/5/26

NEW: now using C++ implementation of m1qn3 instead of external package

mathieu.morlighem at 5:01 AM 5/5/26

CHG: fixed m1qn3 so that it gives the same results as fortran

Mathieu Morlighem at 11:39 AM 5/5/26

CHG: now AD results should be identical as before. One more bug to resolve

Mathieu Morlighem at 5:06 AM 5/6/26

CHG: relaxed tolerances

mathieu.morlighem at 6:02 AM 5/6/26

CHG: ignoring some more files

Mathieu Morlighem at 7:09 AM 5/6/26

CHG: VolumeAboveFloatation.m now calls function HeightAboveFloatation(). Cleanup of some logic and documentation, and allow flags to be used independently from transient time step. NEW: HeightAboveFloatation.m returns the per-element height above floatation over the entire domain defined by ice levelset. Together, the output is not changed, but is more flexible and allows HAF to be easily returned for seeing contributions (and changes) to VAF on the elements.

benjamingetraer at 5:27 AM 5/7/26

CHG: fixed if/else wrong logic when intrusion is on

mathieu.morlighem at 8:27 AM 5/7/26

BUG: fixed intrusion/stabilization bug that only showed up on mac

mathieu.morlighem at 8:41 AM 5/7/26

CHG: added mac tests back now that bug is fixed

mathieu.morlighem at 9:02 AM 5/7/26

CHG: GEMB add option to map using xy cooordinates

95945328+NJSchlegel at 4:59 PM 5/7/26

CHG: GEMB mapping fix xy call for AD

95945328+NJSchlegel at 5:21 PM 5/7/26

CHG: GEMB matlab fix comments

95945328+NJSchlegel at 5:28 PM 5/7/26

NEW: m1qn3 now returns the BEST X/G that it found

mathieu.morlighem at 5:50 AM 5/8/26

NEW: added support for 3.25

mathieu.morlighem at 5:50 AM 5/8/26