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#161 (Jun 1, 2026, 2:16:40 PM)

CHG: streamlining QueueScript so that new clusters don't have a ton of code to write

mathieu.morlighem at 4:06 AM 5/24/26

BUG: restored classes/clusters/cluster_defaults.py

mathieu.morlighem at 4:12 AM 5/24/26

CHG: fixing dakota

mathieu.morlighem at 7:30 AM 5/24/26

CHG: gixing dakota version in python

Mathieu Morlighem at 8:18 AM 5/24/26

CHG: fixing dakota

mathieu.morlighem at 12:28 PM 5/24/26

CHG: crop anything outside the data domain when interpolating dHdt

enigne at 6:28 PM 5/24/26

CHG:add options to data loaders to load from specific nc files

enigne at 10:25 PM 5/24/26

CHG: moved SEMIC from externalpackages to C++ in src/c/shared

mathieu.morlighem at 4:42 AM 5/26/26

CHG: SEMIC is not a required external package anymore

mathieu.morlighem at 7:37 AM 5/26/26

CHG: missing header file to get machine eps

mathieu.morlighem at 7:50 AM 5/26/26

CHG: replaced double by IssmDouble for CoDiPack

mathieu.morlighem at 8:06 AM 5/26/26

BUG: problem recasting IssmDouble to int

Mathieu Morlighem at 9:20 AM 5/26/26

CHG: updating now that semic and m1qn3 are natively in ISSM

Mathieu Morlighem at 10:00 AM 5/26/26

CHG: Now, a unit for TotalHydrologyFlux at grounding line is Gt yr-1.

inwoo0415 at 10:43 PM 5/27/26

BUG: Fix typos....

inwoo0415 at 12:24 AM 5/28/26

CHG: processdata.py - Fix treating element dataset.

inwoo0415 at 1:16 AM 5/28/26

CHG: cmaptools.py - Add functionality to handle LinearSegmentedColormap and string.

inwoo0415 at 10:31 PM 5/31/26

CHG: Fix typos.

inwoo0415 at 10:55 PM 5/31/26

BUG: Fix typos.

inwoo0415 at 10:56 PM 5/31/26

issmversion.py: Fix so docstring is correct and prints version

ken.mankoff at 4:06 AM 6/1/26

export_netCDF.py: Add overwrite keyword

ken.mankoff at 6:44 AM 6/1/26

CHG: shielding seminc from ADOLC

Mathieu Morlighem at 10:11 AM 6/1/26

CHG: moving constant to ifdef

Mathieu Morlighem at 11:28 AM 6/1/26

#159 (May 22, 2026, 7:05:56 PM)

NEW: added clusters/unity.m new unity cluster

mathieu.morlighem at 4:26 PM 5/17/26

NEW: consolidated read_netCDF/write_netCDF should now be more robust:

Mathieu Morlighem at 4:30 PM 5/17/26

CHG: removing extraneous printf

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: removing extraneous printf

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: streamlining generic queueing script

Mathieu Morlighem at 4:34 PM 5/17/26

CHG: moving old code to OLD to avoid confusion

Mathieu Morlighem at 4:44 PM 5/17/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

inwoo0415 at 7:14 AM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

mansakrishna23 at 1:43 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

Mathieu Morlighem at 5:15 PM 5/18/26

CHG: these classes do not have a port property, replace with 0

Mathieu Morlighem at 5:20 PM 5/18/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

inwoo0415 at 6:21 PM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

inwoo0415 at 6:22 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

inwoo0415 at 6:22 PM 5/18/26

CHG: plot_gridded.py - Clean up code and fix bug in getcolormap.

inwoo0415 at 6:30 PM 5/18/26

CHG: get status from copyfile so that MATLAB does not error out, and display a warning instead

mathieu.morlighem at 9:36 AM 5/19/26

CHG: Synchronize Matlab > Python. Display a warning message if we cannot copy the file.

inwoo0415 at 6:39 PM 5/19/26

CHG: Fix minor.

inwoo0415 at 6:41 PM 5/19/26

Adjusted tolerances

34657535+TidbitSoftware at 7:53 PM 5/19/26

CHG: Fix minor.

inwoo0415 at 11:01 PM 5/19/26

CHG: a lot of code in clusters is repetitive, move Upload/Launch/Download in cluster_defaults to simplify the implementation of new cluster classes

mathieu.morlighem at 5:47 AM 5/20/26

CHG: streamlining all cluster classes with new defaults

mathieu.morlighem at 5:02 AM 5/21/26

NEW: adding inversionnudging for Tim's work

mathieu.morlighem at 9:00 AM 5/21/26

CHG: no need to get min/max parameters when creating new elements

Mathieu Morlighem at 9:19 AM 5/21/26

CHG: we do not need InputUpdateFromIoModel anymore

Mathieu Morlighem at 9:27 AM 5/21/26

CHG: ptol is too high in GEMB

95945328+NJSchlegel at 4:32 PM 5/21/26

CHG: GEMB test removal of P tol in accumulation

95945328+NJSchlegel at 6:02 PM 5/21/26

CHG: working on nudging method

Mathieu Morlighem at 6:13 PM 5/21/26

CHG: streamlining cluster classes

mathieu.morlighem at 4:55 AM 5/22/26

CHG: port number should be an integer, not a string

mathieu.morlighem at 4:57 AM 5/22/26

BUG: fixing CoDiPack by converting PDouble to Double

Mathieu Morlighem at 5:52 AM 5/22/26

CHG: removing LaunchQueueJobIceOcean, we can call the usual LaunchQueueJob

mathieu.morlighem at 6:44 AM 5/22/26

Testing if use of new generic class will suffice for binaries

34657535+TidbitSoftware at 11:08 AM 5/22/26

Removed static version of generic class; adjusted tolerances

34657535+TidbitSoftware at 4:37 PM 5/22/26

Forgot to update Python binaries after removing static generic cluster class

34657535+TidbitSoftware at 4:59 PM 5/22/26

Also needed to clean up import and check on static generic class in waitonlock

34657535+TidbitSoftware at 5:01 PM 5/22/26

Adjusted tolerances

34657535+TidbitSoftware at 6:35 PM 5/22/26

#158 (May 16, 2026, 5:25:00 AM)

BUG: Fix bugs in interpISMIP7AntarcticaSMB.m.

inwoo0415 at 6:43 PM 5/10/26

CHG: making Bamg more robust to produce the same mesh across platform. Right now meshes are slightly different on mac and linux. This commit should fix it

mathieu.morlighem at 4:58 AM 5/11/26

CHG: updated Archives now that bamg is more portable

Mathieu Morlighem at 5:25 AM 5/11/26

CHG: adding more tests to Mac M now that bamg is more portable

Mathieu Morlighem at 5:28 AM 5/11/26

CHG: updated archives now that bamg is more robust

Mathieu Morlighem at 5:51 AM 5/11/26

CHG: still erroring out on bamg adaptive mesh

Mathieu Morlighem at 9:16 AM 5/11/26

CHG: excluding test703 again because it uses bamg

Mathieu Morlighem at 9:38 AM 5/11/26

CHG: offset message to be consistent with other notifications

mathieu.morlighem at 9:40 AM 5/11/26

NEW: now create files directly in execution/ instead of current directory to avoid clutter and overwrites

mathieu.morlighem at 1:03 PM 5/11/26

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 7:23 PM 5/11/26

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 8:35 PM 5/11/26

BUG: handle case when executionpath is not /Users/mmorligh/Desktop/ISSM/execution

mathieu.morlighem at 4:56 AM 5/12/26

CHG: better way to handle local vs remote execution

mathieu.morlighem at 7:02 AM 5/12/26

CHG: trying to fix windows with the new format of execution/input files

mathieu.morlighem at 7:27 AM 5/12/26

CHG: fixing windows

mathieu.morlighem at 10:20 AM 5/12/26

m1qn3 is now integrated

34657535+TidbitSoftware at 1:31 PM 5/12/26

Removing m1qn3 fence; formatting

34657535+TidbitSoftware at 4:03 PM 5/12/26

m1qn3 is now integrated

34657535+TidbitSoftware at 5:00 PM 5/12/26

CHG: in some cases the new m1qn3 would fail with exit code 7, this should now be fixed

mathieu.morlighem at 4:45 AM 5/13/26

CHG: minor update

mathieu.morlighem at 4:46 AM 5/13/26

CHG: trying to fix dakota now that files are explicitly in execution

mathieu.morlighem at 5:41 AM 5/13/26

NEW:preparing a GNN based stressbalance emulator

55120383+yinmin-liu at 9:39 AM 5/13/26

frontera, andes settings

mansakrishna23 at 12:59 PM 5/13/26

CHG: use Dakota's output manager to figure out where to read and write files

mathieu.morlighem at 4:36 AM 5/14/26

CHG: added check to warn users when execution dir needs to be cleaned up

mathieu.morlighem at 4:56 AM 5/14/26

BUG: adding default pertubration melt for spatial linear

mansakrishna23 at 12:39 PM 5/14/26

CHG: make sure to save outlog and errlog in execution directory if launched from another directory (no more cd)

mansakrishna23 at 12:40 PM 5/14/26

Delete src/m/andes_settings.m

noreply at 1:24 PM 5/14/26

Delete src/m/frontera_settings.m

noreply at 1:24 PM 5/14/26

Restore MATLAB export_netCDF.m

noreply at 5:16 PM 5/14/26

CHG: eliminating m1qn3 from Github's CI

mathieu.morlighem at 9:53 AM 5/15/26

CHG: now call MAR-IA once per processor instead of per element

55120383+yinmin-liu at 10:51 AM 5/15/26

#157 (May 9, 2026, 5:25:00 AM)

CHG: add GEMB mapping with neighbors for interpolation

95945328+NJSchlegel at 4:28 PM 5/1/26

CHG: add static cast to GEMB mapping neighbor indices

95945328+NJSchlegel at 4:56 PM 5/1/26

CHG: add static cast to GEMB double to int mapping neighbor indices

95945328+NJSchlegel at 6:04 PM 5/1/26

CHG: GEMB mapping casting check

95945328+NJSchlegel at 6:44 PM 5/1/26

CHG: plotmodel.py - Enable to control axes pad.

inwoo0415 at 10:55 PM 5/1/26

CHG: make GEMB mapped neighbors ints

95945328+NJSchlegel at 11:27 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:33 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:34 AM 5/2/26

CHG: updated date in copyright

mathieu.morlighem at 2:12 PM 5/3/26

CHG: style fix - removed commas at the end of if/for/while

mathieu.morlighem at 2:15 PM 5/3/26

CHG: fixed some typos

mathieu.morlighem at 2:24 PM 5/3/26

CHG: trying to fix AD

mathieu.morlighem at 6:24 PM 5/3/26

CHG: testing adThresh in GEMB nightly 258

95945328+NJSchlegel at 8:47 AM 5/4/26

CHG: Test eIdx settings in GEMB test 258

95945328+NJSchlegel at 9:22 AM 5/4/26

CHG: GEMB mapping fix AD and add mapping test if eIdx

95945328+NJSchlegel at 9:45 AM 5/4/26

CHG: GEMB lower tol for eIdx

95945328+NJSchlegel at 10:06 AM 5/4/26

CHG: clarify GEMB class mapping comments

95945328+NJSchlegel at 10:41 AM 5/4/26

CHG: fetch lon and lat when using SMBemulator

55120383+yinmin-liu at 2:19 PM 5/4/26

CHG: updated variable Enum names of SMB emulator

55120383+yinmin-liu at 2:22 PM 5/4/26

CHG: changed mass balance scaling to day2second

55120383+yinmin-liu at 2:22 PM 5/4/26

Adjusted tolerances

34657535+TidbitSoftware at 6:48 PM 5/4/26

NEW: added C++ version of M1QN3, more to come

mathieu.morlighem at 4:27 AM 5/5/26

CHG: getting rid of all gotos

mathieu.morlighem at 4:59 AM 5/5/26

NEW: now using C++ implementation of m1qn3 instead of external package

mathieu.morlighem at 5:01 AM 5/5/26

CHG: fixed m1qn3 so that it gives the same results as fortran

Mathieu Morlighem at 11:39 AM 5/5/26

CHG: now AD results should be identical as before. One more bug to resolve

Mathieu Morlighem at 5:06 AM 5/6/26

CHG: relaxed tolerances

mathieu.morlighem at 6:02 AM 5/6/26

CHG: ignoring some more files

Mathieu Morlighem at 7:09 AM 5/6/26

CHG: VolumeAboveFloatation.m now calls function HeightAboveFloatation(). Cleanup of some logic and documentation, and allow flags to be used independently from transient time step. NEW: HeightAboveFloatation.m returns the per-element height above floatation over the entire domain defined by ice levelset. Together, the output is not changed, but is more flexible and allows HAF to be easily returned for seeing contributions (and changes) to VAF on the elements.

benjamingetraer at 5:27 AM 5/7/26

CHG: fixed if/else wrong logic when intrusion is on

mathieu.morlighem at 8:27 AM 5/7/26

BUG: fixed intrusion/stabilization bug that only showed up on mac

mathieu.morlighem at 8:41 AM 5/7/26

CHG: added mac tests back now that bug is fixed

mathieu.morlighem at 9:02 AM 5/7/26

CHG: GEMB add option to map using xy cooordinates

95945328+NJSchlegel at 4:59 PM 5/7/26

CHG: GEMB mapping fix xy call for AD

95945328+NJSchlegel at 5:21 PM 5/7/26

CHG: GEMB matlab fix comments

95945328+NJSchlegel at 5:28 PM 5/7/26

NEW: m1qn3 now returns the BEST X/G that it found

mathieu.morlighem at 5:50 AM 5/8/26

NEW: added support for 3.25

mathieu.morlighem at 5:50 AM 5/8/26

#156 (May 2, 2026, 2:37:00 PM)

Use get method to avoid square brackets (treated as quotes by Autom4ke) entirely.

34657535+TidbitSoftware at 1:34 PM 5/2/26

Correcting another Python lib/header discovery command

34657535+TidbitSoftware at 1:38 PM 5/2/26

#152 (May 2, 2026, 5:25:00 AM)

CHG: a lot of people get confused and run ./configure, forgetting .sh. Added a check that at least --prefix is provided as a safety measure to help users figure out their mistake

Mathieu Morlighem at 6:37 PM 4/27/26

CHG: fixed some bugs that Claude found

mathieu.morlighem at 10:02 AM 4/28/26

CHG: pull versions from previous BedMachine

Mathieu Morlighem at 11:31 AM 4/28/26

CHG: Claude found some mistakes that are now corrected

mathieu.morlighem at 9:53 AM 4/29/26

CHG: basalstress.m - cleaned up some code and improved documentation.

benjamingetraer at 10:42 AM 4/29/26

NEW: effectivepressure.m - calculate effective pressure according to md.friction.coupling

benjamingetraer at 10:43 AM 4/29/26

CHG: basalstress.m - cleaned up some code and improved documentation.

benjamingetraer at 11:00 AM 4/29/26

NEW: effectivepressure.m - calculate effective pressure according to md.friction.coupling

benjamingetraer at 11:04 AM 4/29/26

Viscoelastic NR archive update, + test2011 realigned to consistent maxiter

lambert.caron at 11:13 AM 4/29/26

restore basalstress from upstream

benjamingetraer at 11:13 AM 4/29/26

CHG: improve clarity and documentation of basalstress.m

benjamingetraer at 12:26 PM 4/29/26

CHG: basalstress.m now uses effectivepressure.m to calculate effective pressure.

benjamingetraer at 12:57 PM 4/29/26

CHG: typos in effectivepressure.m header

benjamingetraer at 1:00 PM 4/29/26

CHG: bug fix - move check for md.friction.coupling from basalstress.m to effectivepressure.m, move effectivepressure() call in basalstress.m to within the switch/case statements, ie do not call effective pressure at all for frictionweertman.

benjamingetraer at 7:57 PM 4/29/26

BUG: MATLAB's mexPrintf is not thread safe, do not pring anything within a thread

Mathieu Morlighem at 8:53 AM 4/30/26

Autom4ke collapses square brackets

34657535+TidbitSoftware at 10:11 AM 4/30/26

CHG:completed the 12 inputs MAR-IA SMB emulator

55120383+yinmin-liu at 1:06 PM 4/30/26

CHG: Synchronize MATLAB and Python implementations for basalstress and effectivepressure.

inwoo0415 at 1:28 AM 5/1/26

CHG: add default emissiving to GEMB and add option 3 for te change with melt present

95945328+NJSchlegel at 1:22 PM 5/1/26

NEW: viscoussampling parameter allows greensfunctions in the grd core to be sampled non-linearly in time, speeding up runs with many time steps

lambert.caron at 3:10 PM 5/1/26

viscoussampling better default value

lambert.caron at 3:23 PM 5/1/26

CHG: Fix indent in interpISMIP7AntarcticaOcn.m.

inwoo0415 at 10:25 PM 5/1/26

NEW: Initialize interpISMIP7AntarcticaSMB.m function.

inwoo0415 at 10:25 PM 5/1/26

CHG: add default emissiving to GEMB and add option 3 for te change with melt present

inwoo0415 at 10:30 PM 5/1/26

CHG: Add a new feature to basalforcingsismip7. Introduce the islocal parameter; however, its definition has not yet been determined.

inwoo0415 at 10:42 PM 5/1/26