Changes

Summary

1. CHG: update interp files for passing in other servers and building with (commit: 227a2fc) (details)
2. CHG: do not recompute distance unless absolutely necessary (commit: c865317) (details)
3. DEL: not needed anymore (commit: edef79f) (details)
4. CHG: Corrected env to pick up PROJ; added infiniband network option to UB CCR cluster; corrected rpath for macOS binaries (commit: 5d348c6) (details)
5. BUG: Typo (commit: f331694) (details)
6. CHG: gdaltransform -> CoordTransform; cleanup (commit: 47dfffb) (details)
7. CHG: not needed anymore, and not part of ISSM (commit: bc727e4) (details)
8. CHG: renaming file because name is inconsistent with function name, and filename is already used by class (commit: fbd2caa) (details)
9. CHG: cleaning up netCDF functions, lots of duplicates (commit: b086cf1) (details)
10. CHG: merging createMCC's (commit: f07fd45) (details)
11. CHG: removing old external packages (commit: a1e8b26) (details)
12. CHG: Reapplying corrections for scp on systems that don't have bash list expansion; more error checks; clean up (commit: 12903b3) (details)
13. BUG: Bad indentation (commit: ae8ae3a) (details)
14. CHG: added netcdf to bin (commit: a2bb407) (details)
15. CHG: do not exceed final time even for fixed time steps (commit: 318f2c9) (details)
16. CHG: do not bother us with vz if 2d (commit: c984b4a) (details)
17. CHG: added option for path in interpMouginot (commit: 5a01774) (details)
18. CHG: updated archive now that final time is enforced for fixed time steps (commit: 36baf6d) (details)
19. CHG: added more checks to GrdModel (commit: a702059) (details)
20. CHG: Adjusted tolerances (commit: 33744a0) (details)
21. CHG: fixing memory leaks (commit: 2a51b2a) (details)
22. BUG: do not free world (commit: 77bed25) (details)
23. CHG: fixing grammar (commit: 10a8e8b) (details)
24. CHG: Adjusted tolerances (commit: 59f4a62) (details)
25. CHG: minor aestetics (commit: 8f975c8) (details)
26. BUG: fixed a ton of memory leaks (commit: 90dda5a) (details)
27. CHG: SMBgemb does not need geometry (commit: 49ad06c) (details)
28. BUG: forgot to change nargin (commit: b505df7) (details)
29. BUG: removed minus signs (commit: 1ad38a0) (details)
30. CHG: using Isend instead of blocking Send (commit: 997fcf1) (details)
31. CHG: moving MPI_Send to Isend, non-blocking (commit: e8a1e91) (details)
32. BUG: new code could not work when port was non 0 (commit: 58593b7) (details)
33. CHG: adding InterpFromGrid as a standard mex module (commit: 87aa45c) (details)
34. CHG: updated EXTRA_DIST (commit: d389e0b) (details)
35. CHG: shorter list (commit: 64a3170) (details)
36. BUG: removed exclamation point from system command (commit: 5220ddf) (details)
37. some hdf5 files are created without proper compression (zlib) support, unsure if reproducible by others (commit: 7bbdc00) (details)
38. setonix cluster support (commit: e690800) (details)
39. CHG: added support for free surface (commit: d149e67) (details)
40. BUG: isrotated should be initialized and copied properly (commit: 0b0969f) (details)
41. CHG: no need to write restart file after we are done with optimization (commit: 7864702) (details)
42. CHG: not needed: (commit: 3716c29) (details)
43. CHG: updated CPPcheck github link (commit: 22c1fb8) (details)
44. CHG: no need to keep adic (commit: 1cec4c5) (details)
45. CHG: no need to keep angel (commit: 15fec48) (details)
46. DEL: removed unused lib (commit: 2d13e67) (details)
47. CHG: estetics (commit: a38ecd5) (details)
48. CHG: Adjusted tolerances (commit: 69d4149) (details)
49. CHG: updated cppcheck installation script (commit: 92003e6) (details)
50. CHG: cleanup based on cppcheck (commit: 1303b62) (details)
51. CHG: removing GaussLobato, unused (commit: b4df8a2) (details)
52. CHG: tx and ty are unused (commit: dbe3cfb) (details)
53. CHG: removing GetM, unused (commit: 7ba02ae) (details)
54. CHG: removing FindParamInDataset, unused (commit: ffc832e) (details)
55. CHG: removing DeleteBarystaticContributionsParam, unused (commit: 491148e) (details)
56. CHG: CreateKMatrix unused (commit: b43d554) (details)
57. CHG: do not call python's configure, let PETSc do it (commit: 5fafd3e) (details)
58. CHG: cleaning up external packages (commit: c8b9a09) (details)
59. CHG: More cleanup of external packages (commit: 480d2bc) (details)
60. CHG: list outputs (commit: 796e574) (details)
61. CHG: machine name for discover should not be local machine name (commit: 1583842) (details)
62. CHG: added --with-python option to simplify python support (commit: b581cdf) (details)
63. CHG: Test new Python configuration option on Jenkins (commit: df8d14d) (details)
64. CHG: More reliable way of getting correct include path for Python on macOS that has both Xcode and Command Line Tools installed (commit: e6cde11) (details)
65. CHG: forgot to add -I for python.h (commit: b972b4c) (details)
66. CHG: reverting back, and need double brackets for m4 (commit: c0622b2) (details)
67. CHG: Check second path for Python.h on macOS (commit: 894249f) (details)
68. CHG: Need another way to get libpython on macOS (commit: 71c5a25) (details)
69. BUG: Correction to path supplied to L linker option (commit: 412afd0) (details)
70. ADD: added up to Outputdefinition2000Enum (commit: 0ffb0e3) (details)
71. ADD: new modeldata interpolation script (commit: 1b4fd77) (details)
72. BUG: only write part of large outlogs and errlogs (commit: 93b4f08) (details)
73. CHG: added preemptable node option (commit: 335db67) (details)
74. CHG: New --with-python option appears to be working on all Jenkins nodes now (commit: 030fe2a) (details)
75. CHG: Updating cmake to latest version (commit: a51eb82) (details)
76. CHG: Moving back to earlier version of Cmake until PETSc updates external packages; download latest version of MPICH (commit: e3f2532) (details)
77. CHG: Wrong version of Cmake (commit: 28d4c28) (details)
78. CHG: added TransientFileInput, not working yet (commit: d1594b8) (details)
79. CHG: added new VecToMPISerial, which may or may not be faster, to check (commit: edfac10) (details)
80. CHG: cleanup (commit: 6fa2dcb) (details)
81. CHG: fixed typo (commit: f50c4ea) (details)
82. CHG: missing include (commit: ce073e7) (details)
83. CHG: relaxed tolerances (commit: 0941f6f) (details)
84. CHG: removing unused configure options (commit: 69b9155) (details)
85. CHG: updated Makefiles accordingly (whoops) (commit: 8ac30ea) (details)
86. ADD: `small` node for frontera (commit: 07b55ed) (details)
87. CHG: forgot to update javascript Makefile (commit: aefad1e) (details)
88. ADD: option to choose normal vector from velocity or front normal in calving rate calculation (commit: d5a0ec4) (details)
89. CHG: removed scripts that are not used (commit: 828c45f) (details)
90. DEL: removed kml stuff (commit: 2401588) (details)
91. CHG: removed KML stuff (commit: b33fec7) (details)
92. CHG: no need to include kml anymore (commit: a45f1dd) (details)
93. CHG: added warning so that people start using cuffey, which is more accurate for warmer ice (commit: 1ef87ca) (details)
94. CHG: use float.h's DBL_EPSILON instead of defining new variables (commit: 0205e85) (details)
95. CHG: do not define a structure with the same name twice (commit: a1d03c2) (details)
96. CHG: Pulling master branch of Gmsh development repo for now to overcome duplicate definition issue (commit: 778fe6f) (details)
97. ADD: crevasse depth law based on buttressing (commit: a5d2da4) (details)
98. CHG: Correcting linking (rpath) of Boost on newer macOS Command Line Tools (commit: 8997ba7) (details)
99. BUG: some variables were not initialized (commit: 9e86f27) (details)
100. BUG:add 1e-10 to comparing thickness with crevasse to avoid machine epsilon (commit: cfa6325) (details)
101. ADD: test for crevasse depth law with buttressing (commit: 53f2f40) (details)
102. CHG: better error message to avoid people using periodic BC with non linear elements (commit: 442d638) (details)
103. CHG: better error message (commit: b3d215c) (details)
104. CHG: force path to CPPCHECK (commit: a54ca18) (details)
105. CHG: cleaning up unused functions (commit: d6146b1) (details)
106. CHG: new path (commit: 40bad55) (details)
107. CHG: Fixes for UB CCR cluster class (finally running as expected!) (commit: e0585ac) (details)
108. ADD:TransientGriddedFieldParam to handle transient gridded data (commit: 7e8d081) (details)
109. ADD: SMBpddGCM in m file and SMBAnalysis (commit: bf89e83) (details)
110. ADD: SMBpddGCM model, input tested (commit: eb52dc6) (details)
111. CHG: declare PROJ_LIB if not found (commit: 723e374) (details)
112. CHG: added interpBedmap3.m to interpolate Bedmap3 data (commit: 19232cd) (details)
113. CHG: handle different types of geotiffs (commit: 063d825) (details)
114. CHG: do not error out if data is outside requested x/y (commit: f720e70) (details)
115. CHG: cleaned up function so that it does not rely on try/catch (and sped up the code here and there) (commit: a95b552) (details)
116. BUG:fix the indices in TransientGriddedFieldParam (commit: ac2a196) (details)
117. ADD:FindParam for TransientGriddedFieldParam to get the whole time slice (commit: 4be0965) (details)
118. CHG:lat,lon in SMGpddGMC to x_grid and y_grid (commit: f212acb) (details)
119. CHG: move all the helpler functions from InterpFromGridToMeshx.cpp to shared/Numerics/Interpolation.cpp (commit: a5e367d) (details)
120. add temperature and precepitation as input and output (commit: abaee52) (details)
121. BUG: No regional/ subdir (commit: d81c99d) (details)
122. NEW: added cost function to integrate L2 norm over base (commit: 1381298) (details)
123. CHG: no more types (commit: 0088672) (details)
124. ADD: time averaging function for TransientGriddedFieldParam::GetParameterValue (commit: 01a1766) (details)
125. BUG:fix NULL can not be set to index (commit: 14e78a2) (details)
126. Changes for enabling AD with PETsc. (commit: a555d6d) (details)
127. Deactivation of new VecToMPISerial function. (commit: 2099f70) (details)
128. ADD:accumulation, ablation, refreezing (commit: a8e5125) (details)
129. BUG:fix the units (commit: 1ee884e) (details)
130. CHG: updated script so that we can reinstall adjointpetsc more than once (commit: ed7a5c0) (details)
131. CHG: need to include adjointpetsc otherwise it won't find header file (commit: 8758358) (details)
132. CHG: need to have ajointpetsclib in path otherwise mex modules are lost (commit: ce73ea6) (details)
133. ADD:complete SBMpddGCM (commit: b97c17b) (details)
134. CHG: Adjusted tolerances (commit: 874905e) (details)

CHG: update interp files for passing in other servers and building with
MATLAB_DIR
 (commit: 227a2fc)

CHG: do not recompute distance unless absolutely necessary
 (commit: c865317)

DEL: not needed anymore
 (commit: edef79f)

CHG: Corrected env to pick up PROJ; added infiniband network option to UB CCR cluster; corrected rpath for macOS binaries
 (commit: 5d348c6)

BUG: Typo
 (commit: f331694)

CHG: gdaltransform -> CoordTransform; cleanup
 (commit: 47dfffb)

CHG: not needed anymore, and not part of ISSM
 (commit: bc727e4)

CHG: renaming file because name is inconsistent with function name, and filename is already used by class
 (commit: fbd2caa)

CHG: cleaning up netCDF functions, lots of duplicates
 (commit: b086cf1)

CHG: merging createMCC's
 (commit: f07fd45)

CHG: removing old external packages
 (commit: a1e8b26)

CHG: Reapplying corrections for scp on systems that don't have bash list expansion; more error checks; clean up
 (commit: 12903b3)

BUG: Bad indentation
 (commit: ae8ae3a)

CHG: added netcdf to bin
 (commit: a2bb407)

CHG: do not exceed final time even for fixed time steps
 (commit: 318f2c9)

CHG: do not bother us with vz if 2d
 (commit: c984b4a)

CHG: added option for path in interpMouginot
 (commit: 5a01774)

CHG: updated archive now that final time is enforced for fixed time steps
 (commit: 36baf6d)

CHG: added more checks to GrdModel
 (commit: a702059)

CHG: Adjusted tolerances
 (commit: 33744a0)

CHG: fixing memory leaks
 (commit: 2a51b2a)

BUG: do not free world
 (commit: 77bed25)

CHG: fixing grammar
 (commit: 10a8e8b)

CHG: Adjusted tolerances
 (commit: 59f4a62)

CHG: minor aestetics
 (commit: 8f975c8)

BUG: fixed a ton of memory leaks
 (commit: 90dda5a)

CHG: SMBgemb does not need geometry
 (commit: 49ad06c)

BUG: forgot to change nargin
 (commit: b505df7)

BUG: removed minus signs
 (commit: 1ad38a0)

CHG: using Isend instead of blocking Send
 (commit: 997fcf1)

CHG: moving MPI_Send to Isend, non-blocking
 (commit: e8a1e91)

BUG: new code could not work when port was non 0
 (commit: 58593b7)

CHG: adding InterpFromGrid as a standard mex module
 (commit: 87aa45c)

CHG: updated EXTRA_DIST
 (commit: d389e0b)

CHG: shorter list
 (commit: 64a3170)

BUG: removed exclamation point from system command
 (commit: 5220ddf)

some hdf5 files are created without proper compression (zlib) support, unsure if reproducible by others
 (commit: 7bbdc00)

setonix cluster support
 (commit: e690800)

CHG: added support for free surface
 (commit: d149e67)

BUG: isrotated should be initialized and copied properly
 (commit: 0b0969f)

CHG: no need to write restart file after we are done with optimization
 (commit: 7864702)

CHG: not needed:
 (commit: 3716c29)

CHG: updated CPPcheck github link
 (commit: 22c1fb8)

CHG: no need to keep adic
 (commit: 1cec4c5)

CHG: no need to keep angel
 (commit: 15fec48)

DEL: removed unused lib
 (commit: 2d13e67)

CHG: estetics
 (commit: a38ecd5)

CHG: Adjusted tolerances
 (commit: 69d4149)

CHG: updated cppcheck installation script
 (commit: 92003e6)

CHG: cleanup based on cppcheck
 (commit: 1303b62)

CHG: removing GaussLobato, unused
 (commit: b4df8a2)

CHG: tx and ty are unused
 (commit: dbe3cfb)

CHG: removing GetM, unused
 (commit: 7ba02ae)

CHG: removing FindParamInDataset, unused
 (commit: ffc832e)

CHG: removing DeleteBarystaticContributionsParam, unused
 (commit: 491148e)

CHG: CreateKMatrix unused
 (commit: b43d554)

CHG: do not call python's configure, let PETSc do it
 (commit: 5fafd3e)

CHG: cleaning up external packages
 (commit: c8b9a09)

CHG: More cleanup of external packages
 (commit: 480d2bc)

CHG: list outputs
 (commit: 796e574)

CHG: machine name for discover should not be local machine name
 (commit: 1583842)

CHG: added --with-python option to simplify python support
 (commit: b581cdf)

CHG: Test new Python configuration option on Jenkins
 (commit: df8d14d)

CHG: More reliable way of getting correct include path for Python on macOS that has both Xcode and Command Line Tools installed
 (commit: e6cde11)

CHG: forgot to add -I for python.h
 (commit: b972b4c)

CHG: reverting back, and need double brackets for m4
 (commit: c0622b2)

CHG: Check second path for Python.h on macOS
 (commit: 894249f)

CHG: Need another way to get libpython on macOS
 (commit: 71c5a25)

BUG: Correction to path supplied to L linker option
 (commit: 412afd0)

ADD: added up to Outputdefinition2000Enum
 (commit: 0ffb0e3)

ADD: new modeldata interpolation script

ADD: new modeldata interpolation scripts

BUG: specified which files
 (commit: 1b4fd77)

BUG: only write part of large outlogs and errlogs
 (commit: 93b4f08)

CHG: added preemptable node option
 (commit: 335db67)

CHG: New --with-python option appears to be working on all Jenkins nodes now
 (commit: 030fe2a)

CHG: Updating cmake to latest version
 (commit: a51eb82)

CHG: Moving back to earlier version of Cmake until PETSc updates external packages; download latest version of MPICH
 (commit: e3f2532)

CHG: Wrong version of Cmake
 (commit: 28d4c28)

CHG: added TransientFileInput, not working yet
 (commit: d1594b8)

CHG: added new VecToMPISerial, which may or may not be faster, to check
 (commit: edfac10)

CHG: cleanup
 (commit: 6fa2dcb)

CHG: fixed typo
 (commit: f50c4ea)

CHG: missing include
 (commit: ce073e7)

CHG: relaxed tolerances
 (commit: 0941f6f)

CHG: removing unused configure options
 (commit: 69b9155)

CHG: updated Makefiles accordingly (whoops)
 (commit: 8ac30ea)

ADD: `small` node for frontera
 (commit: 07b55ed)

CHG: forgot to update javascript Makefile
 (commit: aefad1e)

ADD: option to choose normal vector from velocity or front normal in calving rate calculation
 (commit: d5a0ec4)

CHG: removed scripts that are not used
 (commit: 828c45f)

DEL: removed kml stuff
 (commit: 2401588)

CHG: removed KML stuff
 (commit: b33fec7)

CHG: no need to include kml anymore
 (commit: a45f1dd)

CHG: added warning so that people start using cuffey, which is more accurate for warmer ice
 (commit: 1ef87ca)

CHG: use float.h's DBL_EPSILON instead of defining new variables
 (commit: 0205e85)

CHG: do not define a structure with the same name twice
 (commit: a1d03c2)

CHG: Pulling master branch of Gmsh development repo for now to overcome duplicate definition issue
 (commit: 778fe6f)

ADD: crevasse depth law based on buttressing
 (commit: a5d2da4)

CHG: Correcting linking (rpath) of Boost on newer macOS Command Line Tools
 (commit: 8997ba7)

BUG: some variables were not initialized
 (commit: 9e86f27)

BUG:add 1e-10 to comparing thickness with crevasse to avoid machine epsilon
 (commit: cfa6325)

ADD: test for crevasse depth law with buttressing
 (commit: 53f2f40)

CHG: better error message to avoid people using periodic BC with non linear elements
 (commit: 442d638)

CHG: better error message
 (commit: b3d215c)

CHG: force path to CPPCHECK
 (commit: a54ca18)

CHG: cleaning up unused functions
 (commit: d6146b1)

CHG: new path
 (commit: 40bad55)

CHG: Fixes for UB CCR cluster class (finally running as expected!)
 (commit: e0585ac)

ADD:TransientGriddedFieldParam to handle transient gridded data
 (commit: 7e8d081)

ADD: SMBpddGCM in m file and SMBAnalysis
 (commit: bf89e83)

ADD: SMBpddGCM model, input tested
 (commit: eb52dc6)

CHG: declare PROJ_LIB if not found
 (commit: 723e374)

CHG: added interpBedmap3.m to interpolate Bedmap3 data
 (commit: 19232cd)

CHG: handle different types of geotiffs
 (commit: 063d825)

CHG: do not error out if data is outside requested x/y
 (commit: f720e70)

CHG: cleaned up function so that it does not rely on try/catch (and sped up the code here and there)
 (commit: a95b552)

BUG:fix the indices in TransientGriddedFieldParam
 (commit: ac2a196)

ADD:FindParam for TransientGriddedFieldParam to get the whole time slice
 (commit: 4be0965)

CHG:lat,lon in SMGpddGMC to x_grid and y_grid
 (commit: f212acb)

CHG: move all the helpler functions from InterpFromGridToMeshx.cpp to shared/Numerics/Interpolation.cpp
 (commit: a5e367d)

add temperature and precepitation as input and output
 (commit: abaee52)