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Started by upstream project "Debian_Linux-ADOL-C" build number 3160 originally caused by: Started by GitHub push by TidbitSoftware Running as SYSTEM Building remotely on Debian_12-VM (debian linux) in workspace /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM The recommended git tool is: NONE using credential 3c85c82b-fb35-4fea-b703-0aa4f155f9c7 > git rev-parse --resolve-git-dir /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.39.2' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 0889778afc3a739bb2c3618145ca720c5a7bc6fd (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 0889778afc3a739bb2c3618145ca720c5a7bc6fd # timeout=10 Commit message: "Merge branch 'main' of https://github.com/ISSMteam/ISSM" > git rev-list --no-walk a727659447023021aded27d06da776892f117388 # timeout=10 [Debian_12-VM] $ /bin/bash /tmp/jenkins8486481483477467726.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== List of changed files --------------------- jenkins/pleiades-basic jenkins/pleiades-dakota jenkins/pleiades-solid_earth jenkins/ross-win-msys2-gcc-msmpi-basic jenkins/ross-win-msys2-mingw-msmpi-basic jenkins/ross-win-msys2-mingw-msmpi-binaries-matlab m4/issm_options.m4 src/c/Makefile.am src/c/classes/Elements/Tria.cpp src/c/classes/Loads/Friction.cpp src/c/shared/Exceptions/Exceptions.cpp src/c/shared/io/Print/PrintfFunction.cpp -- checking for changed externalpackages... no -- checking for reconfiguration... yes -- checking for recompilation... yes ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping gsl ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping adjoinablempi ====================================================== ====================================================== Skipping adolc ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Cleaning up and reconfiguring ====================================================== CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/aux-config/missing aclocal-1.16 -I m4 cd . && /bin/bash /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/aux-config/missing automake-1.16 --foreign CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/aux-config/missing autoconf /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM --disable-static --enable-development --enable-debugging --with-numthreads=4 --without-kriging --without-kml --without-Love --with-matlab-dir=/usr/local/MATLAB/R2023b --with-python-version=3.11 --with-python-dir=/usr --with-python-numpy-dir=/home/jenkins/.venv/issm/lib/python3.11/site-packages/numpy --with-fortran-lib=-L/usr/lib/x86_64-linux-gnu -lgfortran --with-mpi-include=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install/include --with-mpi-libflags=-L/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort --with-ampi-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/adjoinablempi/install --with-metis-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-parmetis-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-blas-lapack-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-scalapack-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-mumps-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-triangle-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/triangle/install --with-gsl-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/gsl/install --with-adolc-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/adolc/install --with-semic-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/semic/install --no-create --no-recursion configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for icc... no checking for cl... no checking for icl... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for icpc... no checking for cl... no checking for icl... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /usr/bin/date checking for build date... Fri Jul 26 13:22:03 PDT 2024 checking user name... jenkins checking host full OS name and version... linux checking host cpu... x86_64 checking vendor... pc checking host OS name... linux checking host OS version... 6.1.0-21-amd64 checking host OS architecture... x86_64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... ./configure: line 23636: syntax error near unexpected token `)' ./configure: line 23636: ` *mingw*)' make: *** [Makefile:481: config.status] Error 2 /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM --disable-static --enable-development --enable-debugging --with-numthreads=4 --without-kriging --without-kml --without-Love --with-matlab-dir=/usr/local/MATLAB/R2023b --with-python-version=3.11 --with-python-dir=/usr --with-python-numpy-dir=/home/jenkins/.venv/issm/lib/python3.11/site-packages/numpy --with-fortran-lib=-L/usr/lib/x86_64-linux-gnu -lgfortran --with-mpi-include=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install/include --with-mpi-libflags=-L/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort --with-ampi-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/adjoinablempi/install --with-metis-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-parmetis-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-blas-lapack-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-scalapack-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-mumps-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/petsc/install --with-triangle-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/triangle/install --with-gsl-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/gsl/install --with-adolc-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/adolc/install --with-semic-dir=/home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/semic/install --no-create --no-recursion configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for icc... no checking for cl... no checking for icl... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for icpc... no checking for cl... no checking for icl... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /usr/bin/date checking for build date... Fri Jul 26 13:22:09 PDT 2024 checking user name... jenkins checking host full OS name and version... linux checking host cpu... x86_64 checking vendor... pc checking host OS name... linux checking host OS version... 6.1.0-21-amd64 checking host OS architecture... x86_64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... ./configure: line 23636: syntax error near unexpected token `)' ./configure: line 23636: ` *mingw*)' make: *** [Makefile:481: config.status] Error 2 autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'. libtoolize: copying file './aux-config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: running: /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/autotools/install/bin/autoconf --force autoreconf: running: /home/jenkins/workspace/Debian_Linux-ADOL-C/AMPI/ampion/label/Debian_12-VM/externalpackages/autotools/install/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:17: installing './aux-config/compile' configure.ac:24: installing './aux-config/missing' src/c/Makefile.am: installing './aux-config/depcomp' autoreconf: Leaving directory `.' configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for icc... no checking for cl... no checking for icl... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for icpc... no checking for cl... no checking for icl... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking dependency style of g++... gcc3 checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /usr/bin/date checking for build date... Fri Jul 26 13:22:26 PDT 2024 checking user name... jenkins checking host full OS name and version... linux checking host cpu... x86_64 checking vendor... pc checking host OS name... linux checking host OS version... 6.1.0-21-amd64 checking host OS architecture... x86_64 checking for debugging support... yes checking for development support... yes checking for standalone modules build... no checking for standalone executables build... no checking for standalone libraries build... no checking for wrappers compilation... yes checking operating system type... ./configure: line 23636: syntax error near unexpected token `)' ./configure: line 23636: ` *mingw*)' ISSM configuration failed (see options below) \ --prefix=${ISSM_DIR} \ --disable-static \ --enable-development \ --enable-debugging \ --with-numthreads=4 \ --without-kriging \ --without-kml \ --without-Love \ --with-matlab-dir=${MATLAB_PATH} \ --with-python-version=3.11 \ --with-python-dir=/usr \ --with-python-numpy-dir="${HOME}/.venv/issm/lib/python3.11/site-packages/numpy" \ --with-fortran-lib="-L/usr/lib/x86_64-linux-gnu -lgfortran" \ --with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \ --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ --with-ampi-dir=${ISSM_DIR}/externalpackages/adjoinablempi/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \ --with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \ --with-adolc-dir=${ISSM_DIR}/externalpackages/adolc/install \ --with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \ ISSM configuration failed! Build step 'Execute shell' marked build as failure Recording test results Finished: FAILURE