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#3567 (May 15, 2026, 9:53:56 AM)

CHG: eliminating m1qn3 from Github's CI

mathieu.morlighem at 9:53 AM 5/15/26

#3566 (May 14, 2026, 5:30:52 PM)

Restore MATLAB export_netCDF.m

noreply at 5:16 PM 5/14/26

#3565 (May 14, 2026, 1:35:40 PM)

Delete src/m/andes_settings.m

noreply at 1:24 PM 5/14/26

Delete src/m/frontera_settings.m

noreply at 1:24 PM 5/14/26

#3564 (May 14, 2026, 12:51:30 PM)

frontera, andes settings

mansakrishna23 at 12:59 PM 5/13/26

BUG: adding default pertubration melt for spatial linear

mansakrishna23 at 12:39 PM 5/14/26

CHG: make sure to save outlog and errlog in execution directory if launched from another directory (no more cd)

mansakrishna23 at 12:40 PM 5/14/26

#3563 (May 14, 2026, 5:07:57 AM)

CHG: added check to warn users when execution dir needs to be cleaned up

mathieu.morlighem at 4:56 AM 5/14/26

#3562 (May 14, 2026, 4:41:27 AM)

CHG: use Dakota's output manager to figure out where to read and write files

mathieu.morlighem at 4:36 AM 5/14/26

#3561 (May 13, 2026, 10:45:33 AM)

NEW:preparing a GNN based stressbalance emulator

55120383+yinmin-liu at 9:39 AM 5/13/26

#3560 (May 13, 2026, 5:42:14 AM)

CHG: trying to fix dakota now that files are explicitly in execution

mathieu.morlighem at 5:41 AM 5/13/26

#3559 (May 13, 2026, 5:04:13 AM)

CHG: in some cases the new m1qn3 would fail with exit code 7, this should now be fixed

mathieu.morlighem at 4:45 AM 5/13/26

CHG: minor update

mathieu.morlighem at 4:46 AM 5/13/26

#3558 (May 12, 2026, 5:10:01 PM)

m1qn3 is now integrated

34657535+TidbitSoftware at 5:00 PM 5/12/26

#3557 (May 12, 2026, 4:03:53 PM)

Removing m1qn3 fence; formatting

34657535+TidbitSoftware at 4:03 PM 5/12/26

#3556 (May 12, 2026, 1:31:39 PM)

m1qn3 is now integrated

34657535+TidbitSoftware at 1:31 PM 5/12/26

#3555 (May 12, 2026, 10:20:33 AM)

CHG: fixing windows

mathieu.morlighem at 10:20 AM 5/12/26

#3554 (May 12, 2026, 7:33:29 AM)

CHG: trying to fix windows with the new format of execution/input files

mathieu.morlighem at 7:27 AM 5/12/26

#3553 (May 12, 2026, 7:02:42 AM)

CHG: better way to handle local vs remote execution

mathieu.morlighem at 7:02 AM 5/12/26

#3552 (May 12, 2026, 4:57:07 AM)

BUG: handle case when executionpath is not /Users/mmorligh/Desktop/ISSM/execution

mathieu.morlighem at 4:56 AM 5/12/26

#3551 (May 11, 2026, 8:38:03 PM)

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 7:23 PM 5/11/26

BUG: issmscpin.py – Fix missing bracketstyle argument in the function call. Also fix the missing path variable when constructing the SCP command.

inwoo0415 at 8:35 PM 5/11/26

#3550 (May 11, 2026, 1:03:27 PM)

NEW: now create files directly in execution/ instead of current directory to avoid clutter and overwrites

mathieu.morlighem at 1:03 PM 5/11/26

#3549 (May 11, 2026, 10:13:57 AM)

CHG: excluding test703 again because it uses bamg

Mathieu Morlighem at 9:38 AM 5/11/26

#3548 (May 11, 2026, 9:40:40 AM)

CHG: offset message to be consistent with other notifications

mathieu.morlighem at 9:40 AM 5/11/26

#3547 (May 11, 2026, 9:16:18 AM)

CHG: still erroring out on bamg adaptive mesh

Mathieu Morlighem at 9:16 AM 5/11/26

#3546 (May 11, 2026, 6:00:57 AM)

CHG: updated archives now that bamg is more robust

Mathieu Morlighem at 5:51 AM 5/11/26

#3545 (May 11, 2026, 5:28:59 AM)

CHG: updated Archives now that bamg is more portable

Mathieu Morlighem at 5:25 AM 5/11/26

CHG: adding more tests to Mac M now that bamg is more portable

Mathieu Morlighem at 5:28 AM 5/11/26

#3544 (May 11, 2026, 5:14:42 AM)

CHG: making Bamg more robust to produce the same mesh across platform. Right now meshes are slightly different on mac and linux. This commit should fix it

mathieu.morlighem at 4:58 AM 5/11/26

#3543 (May 10, 2026, 8:28:13 PM)

BUG: Fix bugs in interpISMIP7AntarcticaSMB.m.

inwoo0415 at 6:43 PM 5/10/26

#3542 (May 8, 2026, 5:51:05 AM)

NEW: m1qn3 now returns the BEST X/G that it found

mathieu.morlighem at 5:50 AM 5/8/26

NEW: added support for 3.25

mathieu.morlighem at 5:50 AM 5/8/26

#3541 (May 7, 2026, 6:11:17 PM)

CHG: GEMB add option to map using xy cooordinates

95945328+NJSchlegel at 4:59 PM 5/7/26

CHG: GEMB mapping fix xy call for AD

95945328+NJSchlegel at 5:21 PM 5/7/26

CHG: GEMB matlab fix comments

95945328+NJSchlegel at 5:28 PM 5/7/26

#3540 (May 7, 2026, 3:42:09 PM)

CHG: plotmodel.py - Enable to control axes pad.

inwoo0415 at 10:55 PM 5/1/26

#3539 (May 7, 2026, 9:11:30 AM)

CHG: added mac tests back now that bug is fixed

mathieu.morlighem at 9:02 AM 5/7/26

#3538 (May 7, 2026, 8:42:22 AM)

CHG: fixed if/else wrong logic when intrusion is on

mathieu.morlighem at 8:27 AM 5/7/26

BUG: fixed intrusion/stabilization bug that only showed up on mac

mathieu.morlighem at 8:41 AM 5/7/26

#3537 (May 7, 2026, 5:34:12 AM)

CHG: VolumeAboveFloatation.m now calls function HeightAboveFloatation(). Cleanup of some logic and documentation, and allow flags to be used independently from transient time step. NEW: HeightAboveFloatation.m returns the per-element height above floatation over the entire domain defined by ice levelset. Together, the output is not changed, but is more flexible and allows HAF to be easily returned for seeing contributions (and changes) to VAF on the elements.

benjamingetraer at 5:27 AM 5/7/26

#3536 (May 6, 2026, 7:11:27 AM)

CHG: ignoring some more files

Mathieu Morlighem at 7:09 AM 5/6/26

#3535 (May 6, 2026, 6:03:11 AM)

CHG: relaxed tolerances

mathieu.morlighem at 6:02 AM 5/6/26

#3534 (May 6, 2026, 5:07:13 AM)

CHG: getting rid of all gotos

mathieu.morlighem at 4:59 AM 5/5/26

NEW: now using C++ implementation of m1qn3 instead of external package

mathieu.morlighem at 5:01 AM 5/5/26

CHG: fixed m1qn3 so that it gives the same results as fortran

Mathieu Morlighem at 11:39 AM 5/5/26

CHG: now AD results should be identical as before. One more bug to resolve

Mathieu Morlighem at 5:06 AM 5/6/26

#3533 (May 5, 2026, 4:27:55 AM)

NEW: added C++ version of M1QN3, more to come

mathieu.morlighem at 4:27 AM 5/5/26

#3532 (May 4, 2026, 6:49:15 PM)

Adjusted tolerances

34657535+TidbitSoftware at 6:48 PM 5/4/26

#3531 (May 4, 2026, 3:12:06 PM)

CHG: fetch lon and lat when using SMBemulator

55120383+yinmin-liu at 2:19 PM 5/4/26

CHG: updated variable Enum names of SMB emulator

55120383+yinmin-liu at 2:22 PM 5/4/26

CHG: changed mass balance scaling to day2second

55120383+yinmin-liu at 2:22 PM 5/4/26

#3530 (May 4, 2026, 11:46:31 AM)

CHG: add GEMB mapping with neighbors for interpolation

95945328+NJSchlegel at 4:28 PM 5/1/26

CHG: add static cast to GEMB mapping neighbor indices

95945328+NJSchlegel at 4:56 PM 5/1/26

CHG: add static cast to GEMB double to int mapping neighbor indices

95945328+NJSchlegel at 6:04 PM 5/1/26

CHG: GEMB mapping casting check

95945328+NJSchlegel at 6:44 PM 5/1/26

CHG: make GEMB mapped neighbors ints

95945328+NJSchlegel at 11:27 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:33 AM 5/2/26

CHG: merge with main enum

95945328+NJSchlegel at 11:34 AM 5/2/26

CHG: testing adThresh in GEMB nightly 258

95945328+NJSchlegel at 8:47 AM 5/4/26

CHG: Test eIdx settings in GEMB test 258

95945328+NJSchlegel at 9:22 AM 5/4/26

CHG: GEMB mapping fix AD and add mapping test if eIdx

95945328+NJSchlegel at 9:45 AM 5/4/26

CHG: GEMB lower tol for eIdx

95945328+NJSchlegel at 10:06 AM 5/4/26

CHG: clarify GEMB class mapping comments

95945328+NJSchlegel at 10:41 AM 5/4/26

#3529 (May 3, 2026, 6:29:43 PM)

CHG: trying to fix AD

mathieu.morlighem at 6:24 PM 5/3/26

#3528 (May 3, 2026, 2:33:53 PM)

CHG: style fix - removed commas at the end of if/for/while

mathieu.morlighem at 2:15 PM 5/3/26

CHG: fixed some typos

mathieu.morlighem at 2:24 PM 5/3/26

#3527 (May 3, 2026, 2:12:54 PM)

CHG: updated date in copyright

mathieu.morlighem at 2:12 PM 5/3/26

#3526 (May 2, 2026, 1:59:52 PM)

Use get method to avoid square brackets (treated as quotes by Autom4ke) entirely.

34657535+TidbitSoftware at 1:34 PM 5/2/26

Correcting another Python lib/header discovery command

34657535+TidbitSoftware at 1:38 PM 5/2/26

#3525 (May 1, 2026, 11:29:47 PM)

CHG: Add a new feature to basalforcingsismip7. Introduce the islocal parameter; however, its definition has not yet been determined.

inwoo0415 at 10:42 PM 5/1/26

#3524 (May 1, 2026, 10:43:22 PM)

CHG: add default emissiving to GEMB and add option 3 for te change with melt present

inwoo0415 at 10:30 PM 5/1/26

#3523 (May 1, 2026, 10:25:54 PM)

CHG: Fix indent in interpISMIP7AntarcticaOcn.m.

inwoo0415 at 10:25 PM 5/1/26

NEW: Initialize interpISMIP7AntarcticaSMB.m function.

inwoo0415 at 10:25 PM 5/1/26

#3522 (May 1, 2026, 4:25:55 PM)

NEW: viscoussampling parameter allows greensfunctions in the grd core to be sampled non-linearly in time, speeding up runs with many time steps

lambert.caron at 3:10 PM 5/1/26

viscoussampling better default value

lambert.caron at 3:23 PM 5/1/26

#3521 (May 1, 2026, 1:58:08 PM)

CHG: add default emissiving to GEMB and add option 3 for te change with melt present

95945328+NJSchlegel at 1:22 PM 5/1/26

#3520 (May 1, 2026, 1:33:09 AM)

CHG: Synchronize MATLAB and Python implementations for basalstress and effectivepressure.

inwoo0415 at 1:28 AM 5/1/26

#3519 (Apr 30, 2026, 1:48:37 PM)

CHG:completed the 12 inputs MAR-IA SMB emulator

55120383+yinmin-liu at 1:06 PM 4/30/26

#3518 (Apr 30, 2026, 10:48:29 AM)

Autom4ke collapses square brackets

34657535+TidbitSoftware at 10:11 AM 4/30/26

#3517 (Apr 30, 2026, 8:53:42 AM)

BUG: MATLAB's mexPrintf is not thread safe, do not pring anything within a thread

Mathieu Morlighem at 8:53 AM 4/30/26

#3516 (Apr 29, 2026, 7:57:50 PM)

CHG: bug fix - move check for md.friction.coupling from basalstress.m to effectivepressure.m, move effectivepressure() call in basalstress.m to within the switch/case statements, ie do not call effective pressure at all for frictionweertman.

benjamingetraer at 7:57 PM 4/29/26

#3515 (Apr 29, 2026, 2:22:23 PM)

CHG: basalstress.m - cleaned up some code and improved documentation.

benjamingetraer at 10:42 AM 4/29/26

NEW: effectivepressure.m - calculate effective pressure according to md.friction.coupling

benjamingetraer at 10:43 AM 4/29/26

CHG: basalstress.m - cleaned up some code and improved documentation.

benjamingetraer at 11:00 AM 4/29/26

NEW: effectivepressure.m - calculate effective pressure according to md.friction.coupling

benjamingetraer at 11:04 AM 4/29/26

restore basalstress from upstream

benjamingetraer at 11:13 AM 4/29/26

CHG: improve clarity and documentation of basalstress.m

benjamingetraer at 12:26 PM 4/29/26

CHG: basalstress.m now uses effectivepressure.m to calculate effective pressure.

benjamingetraer at 12:57 PM 4/29/26

CHG: typos in effectivepressure.m header

benjamingetraer at 1:00 PM 4/29/26

#3514 (Apr 29, 2026, 11:22:03 AM)

Viscoelastic NR archive update, + test2011 realigned to consistent maxiter

lambert.caron at 11:13 AM 4/29/26

#3513 (Apr 29, 2026, 10:41:43 AM)

CHG: Claude found some mistakes that are now corrected

mathieu.morlighem at 9:53 AM 4/29/26

#3512 (Apr 28, 2026, 11:42:47 AM)

CHG: pull versions from previous BedMachine

Mathieu Morlighem at 11:31 AM 4/28/26

#3511 (Apr 28, 2026, 10:10:33 AM)

CHG: fixed some bugs that Claude found

mathieu.morlighem at 10:02 AM 4/28/26

#3510 (Apr 27, 2026, 6:38:14 PM)

CHG: a lot of people get confused and run ./configure, forgetting .sh. Added a check that at least --prefix is provided as a safety measure to help users figure out their mistake

Mathieu Morlighem at 6:37 PM 4/27/26

#3509 (Apr 25, 2026, 1:53:28 AM)

CHG: some more fixes from Claude:

mathieu.morlighem at 1:01 AM 4/25/26

CHG: adding this param back, although there is no constructor etc

mathieu.morlighem at 1:03 AM 4/25/26

#3508 (Apr 25, 2026, 12:49:39 AM)

Update sea-level barystatic contribution handling

lambert.caron at 2:53 PM 4/21/26

Fix sea-level change barystatic finalization

lambert.caron at 5:39 PM 4/24/26

#3507 (Apr 23, 2026, 9:34:10 PM)

CHG: Update ISMIP7 basalforcings: Add "delta_t" for calibrating thermal forcing depending on basin. Fix interpISMIP7AntarcticaOcn for loading thermal forcing and salinity of GCM.

inwoo0415 at 8:34 PM 4/23/26

CHG: Synchronize Matlab > Python "displayunsed" in pairoptions.py.

inwoo0415 at 9:17 PM 4/23/26

#3506 (Apr 23, 2026, 8:15:22 PM)

CHG: basalforcingsismip7.py - Add structtoobj.

inwoo0415 at 8:00 PM 4/23/26

CHG: interpISMIP7AntarcticaOcn.py - Add remote 'simba41' machine.

inwoo0415 at 8:00 PM 4/23/26

#3505 (Apr 23, 2026, 2:47:31 PM)

NEW: preparing a ML based SMB calculator

55120383+yinmin-liu at 2:24 PM 4/23/26

#3504 (Apr 22, 2026, 9:09:59 PM)

ken.mankoff at 4:13 PM 4/22/26

ken.mankoff at 4:13 PM 4/22/26

#3503 (Apr 22, 2026, 12:05:34 PM)

BUG: the friction emulator should only be instantiated in case 20

55120383+yinmin-liu at 12:04 PM 4/22/26

#3502 (Apr 21, 2026, 6:30:40 PM)

BUG: fixed segmentation errors when constructing and deconstructing EmulatorParam

55120383+yinmin-liu at 5:52 PM 4/21/26

#3501 (Apr 21, 2026, 6:43:27 AM)

fix: check verbose flag before printing to terminal

daniel.abele at 5:34 AM 4/21/26

#3500 (Apr 20, 2026, 3:30:25 PM)

BUG: fixed some emulator compiling issues.

55120383+yinmin-liu at 2:52 PM 4/20/26

#3499 (Apr 20, 2026, 1:37:28 PM)

BUG: fixed a few problems reported by Claude

mathieu.morlighem at 1:23 PM 4/20/26

#3498 (Apr 20, 2026, 4:44:19 AM)

BUG: fixed some bugs in sea level core

mathieu.morlighem at 11:37 AM 4/19/26

#3497 (Apr 18, 2026, 12:36:38 AM)

Updated archives

34657535+TidbitSoftware at 12:35 AM 4/18/26

#3496 (Apr 17, 2026, 6:22:29 PM)

BUG: fixing bugs found by claude

mathieu.morlighem at 6:11 PM 4/17/26

#3495 (Apr 17, 2026, 4:34:22 PM)

BUG: fixing bugs found by claude

mathieu.morlighem at 4:22 PM 4/17/26

#3494 (Apr 16, 2026, 8:08:45 AM)

CHG: fixed some problems reported by Claude

mathieu.morlighem at 7:56 AM 4/16/26

#3493 (Apr 16, 2026, 7:47:51 AM)

CHG: code is not dead, reverting

mathieu.morlighem at 7:39 AM 4/16/26

#3492 (Apr 16, 2026, 7:16:49 AM)

CHG: cleanup stress balance code

mathieu.morlighem at 6:55 AM 4/16/26

CHG: testing if code is dead

mathieu.morlighem at 6:57 AM 4/16/26

#3491 (Apr 15, 2026, 9:04:31 AM)

CHG: finished friction emulator and uploaded checkpoint file for testing

55120383+yinmin-liu at 8:53 AM 4/15/26

#3490 (Apr 14, 2026, 3:11:39 PM)

CHG: updating friction emulator and pybind11 configurations

55120383+yinmin-liu at 3:11 PM 4/14/26

#3489 (Apr 14, 2026, 7:20:31 AM)

CHG: preparing friction emulator for Yinmin

mathieu.morlighem at 7:20 AM 4/14/26

#3488 (Apr 13, 2026, 6:21:10 PM)

NEW: only compile Emulator parameter if PyBind is on

mathieu.morlighem at 5:44 PM 4/13/26

CHG: fixing some glaring bugs, caught by claude

mathieu.morlighem at 5:44 PM 4/13/26

#3487 (Apr 13, 2026, 7:43:15 AM)

build: add pybind11 configure options for emulator integration

yinmin at 6:56 AM 4/13/26

#3486 (Apr 13, 2026, 5:57:49 AM)

NEW: preparing EmulatorParam param for ML

mathieu.morlighem at 5:48 AM 4/13/26

CHG: updating packages to latest version

mathieu.morlighem at 5:48 AM 4/13/26

#3485 (Apr 12, 2026, 6:39:25 PM)

CHG: removing code that is never used and had a nasty leak, thanks Claude

mathieu.morlighem at 6:39 PM 4/12/26

#3484 (Apr 12, 2026, 7:39:26 AM)

CHG: Synchronize Matlab > Python: class "basalforcingsismip7".

inwoo0415 at 2:27 AM 4/12/26

CHG: basalforcingsismip7.m - Add TODO note for indicating that specific variables are underdevelopment.

inwoo0415 at 2:44 AM 4/12/26

CHG: interpISMIP7AntarcticaOcn.m - Fix bugs.

inwoo0415 at 2:44 AM 4/12/26

#3483 (Apr 12, 2026, 7:14:57 AM)

CHG: Fix minor - add missing module in basalforcingspico.

inwoo0415 at 7:11 AM 4/12/26

#3482 (Apr 11, 2026, 5:12:05 AM)

CHG: added CLAUDE.md to help Claude Code familiarize itself with ISSM

mathieu.morlighem at 5:11 AM 4/11/26

#3481 (Apr 10, 2026, 9:19:25 PM)

CHG: BuildQueueScript now takes filename as input argument

mathieu.morlighem at 9:09 PM 4/10/26

CHG: fixed windows

mathieu.morlighem at 9:11 PM 4/10/26

#3480 (Apr 10, 2026, 8:17:52 PM)

CHG: passing filename to BuildQueueingScript, hopefully I did not break anything... stay tuned

mathieu.morlighem at 8:08 PM 4/10/26

#3479 (Apr 10, 2026, 7:39:48 PM)

noreply at 3:31 PM 4/10/26

#3478 (Apr 10, 2026, 2:41:27 PM)

CHG: provide input filename to marshall

Mathieu Morlighem at 2:35 PM 4/10/26

#3477 (Apr 10, 2026, 2:29:47 PM)

CHG: collapse SMBpddFast, and inherit fields

Mathieu Morlighem at 2:16 PM 4/10/26

CHG: save model using v6 for faster performance if <2Gb

Mathieu Morlighem at 2:17 PM 4/10/26

#3476 (Apr 10, 2026, 9:58:32 AM)

CHG: better explanation of slope, which works for any field

mathieu.morlighem at 9:48 AM 4/10/26

#3475 (Apr 9, 2026, 10:41:18 PM)

CHG: fixing double comma

mathieu.morlighem at 10:31 PM 4/9/26

#3474 (Apr 9, 2026, 10:16:26 PM)

CHG: always symlink when running on local machine

mathieu.morlighem at 10:15 PM 4/9/26

#3473 (Apr 9, 2026, 11:10:32 AM)

CHG: updating version number

mathieu.morlighem at 9:39 AM 4/9/26

#3472 (Apr 9, 2026, 10:00:34 AM)

CHG: adding Bed as default output of solidearth model

Mathieu Morlighem at 9:51 AM 4/9/26

CHG: adding ability to collapse linear basal forcings

Mathieu Morlighem at 9:51 AM 4/9/26

CHG: adding Bed as default output of solidearth model

Mathieu Morlighem at 9:52 AM 4/9/26

#3471 (Apr 8, 2026, 8:15:19 PM)

CHG: loadresultsfromdisk.m – Revert formatting of outlog and errlog for MATLAB versions earlier than R2020b.

inwoo0415 at 8:03 PM 4/8/26

CHG: HydrologyShakti – Add initialization of EffectivePressureEnum in the UpdateElements section. When EffectivePressure is included in md.hydrology.requested_outputs, an error occurs while writing EffectivePressure. This fix resolves the issue; however, it is unclear whether this line is truly necessary.

inwoo0415 at 8:07 PM 4/8/26

#3470 (Apr 8, 2026, 4:09:38 PM)

CHG: updating tag number

mathieu.morlighem at 4:09 PM 4/8/26

#3469 (Apr 8, 2026, 2:35:01 PM)

CHG: better checks for sicopolis PDD + allow for collapse

Mathieu Morlighem at 2:26 PM 4/8/26

CHG: new vik colorbar useful for color blind people

Mathieu Morlighem at 2:27 PM 4/8/26

#3468 (Apr 7, 2026, 9:16:27 PM)

CHG: reverting support for versions earlier than 2020b

mathieu.morlighem at 9:09 PM 4/7/26