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Started by an SCM change Running as SYSTEM Building remotely on Debian_Linux-VM (debian linux) in workspace /home/jenkins/workspace/Debian_Linux-Python Updating https://issm.ess.uci.edu/svn/issm/issm/trunk-jpl@HEAD at revision HEAD Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ U src/c/analyses/StressbalanceAnalysis.cpp U src/c/modules/SurfaceMassBalancex/Gembx.cpp At revision 28252 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’ [Debian_Linux-Python] $ /bin/bash /tmp/jenkins16045717473829241984.sh Cleaning up execution directory ====================================================== Determining Installation type ====================================================== Previous revision number: 28251 Current revision number: 28252 List of updated files /issm/trunk-jpl/src/c/analyses/StressbalanceAnalysis.cpp /issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/Gembx.cpp Determining installation type -- checking for changed externalpackages... no -- checking for reconfiguration... no -- checking for recompilation... yes Recording current svn version: 28252 ====================================================== Skipping autotools ====================================================== ====================================================== Skipping cmake ====================================================== ====================================================== Skipping petsc ====================================================== ====================================================== Skipping triangle ====================================================== ====================================================== Skipping m1qn3 ====================================================== ====================================================== Skipping semic ====================================================== ====================================================== Skipping shell2junit ====================================================== ====================================================== Compiling ISSM ====================================================== Making with 8 CPUs make all-recursive make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python' Making all in src make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src' Making all in c make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' CXX modules/SurfaceMassBalancex/libISSMCore_la-Gembx.lo CXX analyses/libISSMCore_la-StressbalanceAnalysis.lo CXXLD libISSMCore.la CXXLD libISSMModules.la CXXLD kriging.exe CXXLD issm.exe CXXLD issm_slc.exe make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' Making all in m make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' Making all in wrappers make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' Making all in python make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' CXXLD libISSMPython.la CXXLD BamgConvertMesh_python.la CXXLD BamgTriangulate_python.la CXXLD BamgMesher_python.la CXXLD ContourToMesh_python.la CXXLD ContourToNodes_python.la CXXLD ExpToLevelSet_python.la CXXLD ElementConnectivity_python.la CXXLD InterpFromGridToMesh_python.la CXXLD InterpFromMesh2d_python.la CXXLD InterpFromMeshToGrid_python.la CXXLD InterpFromMeshToMesh2d_python.la CXXLD InterpFromMeshToMesh3d_python.la CXXLD IssmConfig_python.la CXXLD MeshPartition_python.la CXXLD MeshProfileIntersection_python.la CXXLD NodeConnectivity_python.la CXXLD Triangle_python.la CXXLD ProcessRifts_python.la make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python' Making install in src make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src' Making install in c make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD kriging.exe make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' CXXLD issm.exe CXXLD issm_slc.exe CXXLD kriging.exe /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Python/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libISSMCore.la libISSMOverload.la libISSMModules.la '/home/jenkins/workspace/Debian_Linux-Python/lib' libtool: install: /usr/bin/install -c .libs/libISSMCore.so /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMCore.so libtool: install: /usr/bin/install -c .libs/libISSMCore.lai /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMCore.la libtool: install: /usr/bin/install -c .libs/libISSMOverload.so /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMOverload.so libtool: install: /usr/bin/install -c .libs/libISSMOverload.lai /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMOverload.la libtool: warning: relinking 'libISSMModules.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/c; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -g -O2 -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -avoid-version -o libISSMModules.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ./shared/Threads/libISSMModules_la-LaunchThread.lo ./shared/Threads/libISSMModules_la-PartitionRange.lo ./shared/Exp/libISSMModules_la-exp.lo ./shared/Triangle/libISSMModules_la-AssociateSegmentToElement.lo ./shared/Triangle/libISSMModules_la-GridInsideHole.lo ./shared/Triangle/libISSMModules_la-OrderSegments.lo ./shared/Triangle/libISSMModules_la-SplitMeshForRifts.lo ./shared/Triangle/libISSMModules_la-TriangleUtils.lo ./modules/Trianglex/libISSMModules_la-Trianglex.lo ./modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo ./modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo ./modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo ./modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo ./modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo ./modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo ./modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo ./modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo ./modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo ./modules/Krigingx/libISSMModules_la-Krigingx.lo ./modules/Krigingx/libISSMModules_la-pKrigingx.lo ./libISSMCore.la -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/triangle/install/lib -ltriangle -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas ) libtool: install: /usr/bin/install -c .libs/libISSMModules.soT /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMModules.so libtool: install: /usr/bin/install -c .libs/libISSMModules.lai /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMModules.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Python/aux-config:/home/jenkins/workspace/Debian_Linux-Python/scripts:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/dyson/:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Python/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c issm.exe issm_slc.exe kriging.exe '/home/jenkins/workspace/Debian_Linux-Python/bin' libtool: install: /usr/bin/install -c .libs/issm.exe /home/jenkins/workspace/Debian_Linux-Python/bin/issm.exe libtool: install: /usr/bin/install -c .libs/issm_slc.exe /home/jenkins/workspace/Debian_Linux-Python/bin/issm_slc.exe libtool: install: /usr/bin/install -c .libs/kriging.exe /home/jenkins/workspace/Debian_Linux-Python/bin/kriging.exe make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/c' Making install in m make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Python/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/m' Making install in wrappers make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' Making install in python make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' /usr/bin/mkdir -p '/home/jenkins/workspace/Debian_Linux-Python/lib' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libISSMPython.la libISSMApi.la BamgConvertMesh_python.la BamgMesher_python.la BamgTriangulate_python.la ContourToMesh_python.la ContourToNodes_python.la ElementConnectivity_python.la ExpToLevelSet_python.la InterpFromGridToMesh_python.la InterpFromMesh2d_python.la InterpFromMeshToGrid_python.la InterpFromMeshToMesh2d_python.la InterpFromMeshToMesh3d_python.la IssmConfig_python.la MeshPartition_python.la MeshProfileIntersection_python.la NodeConnectivity_python.la Triangle_python.la ProcessRifts_python.la '/home/jenkins/workspace/Debian_Linux-Python/lib' libtool: warning: relinking 'libISSMPython.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -g -O2 -o libISSMPython.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ./io/libISSMPython_la-CheckNumPythonArguments.lo ./io/libISSMPython_la-FetchPythonData.lo ./io/libISSMPython_la-WritePythonData.lo ./../../c/libISSMCore.la ./../../c/libISSMModules.la -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/libISSMPython.so.0.0.0T /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMPython.so.0.0.0 libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/lib && { ln -s -f libISSMPython.so.0.0.0 libISSMPython.so.0 || { rm -f libISSMPython.so.0 && ln -s libISSMPython.so.0.0.0 libISSMPython.so.0; }; }) libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/lib && { ln -s -f libISSMPython.so.0.0.0 libISSMPython.so || { rm -f libISSMPython.so && ln -s libISSMPython.so.0.0.0 libISSMPython.so; }; }) libtool: install: /usr/bin/install -c .libs/libISSMPython.lai /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMPython.la libtool: install: /usr/bin/install -c .libs/libISSMApi.so.0.0.0 /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMApi.so.0.0.0 libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/lib && { ln -s -f libISSMApi.so.0.0.0 libISSMApi.so.0 || { rm -f libISSMApi.so.0 && ln -s libISSMApi.so.0.0.0 libISSMApi.so.0; }; }) libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/lib && { ln -s -f libISSMApi.so.0.0.0 libISSMApi.so || { rm -f libISSMApi.so && ln -s libISSMApi.so.0.0.0 libISSMApi.so; }; }) libtool: install: /usr/bin/install -c .libs/libISSMApi.lai /home/jenkins/workspace/Debian_Linux-Python/lib/libISSMApi.la libtool: warning: relinking 'BamgConvertMesh_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o BamgConvertMesh_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../BamgConvertMesh/BamgConvertMesh_python_la-BamgConvertMesh.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/BamgConvertMesh_python.so libtool: install: /usr/bin/install -c .libs/BamgConvertMesh_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/BamgConvertMesh_python.la libtool: warning: relinking 'BamgMesher_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o BamgMesher_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../BamgMesher/BamgMesher_python_la-BamgMesher.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/BamgMesher_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/BamgMesher_python.so libtool: install: /usr/bin/install -c .libs/BamgMesher_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/BamgMesher_python.la libtool: warning: relinking 'BamgTriangulate_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o BamgTriangulate_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../BamgTriangulate/BamgTriangulate_python_la-BamgTriangulate.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/BamgTriangulate_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/BamgTriangulate_python.so libtool: install: /usr/bin/install -c .libs/BamgTriangulate_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/BamgTriangulate_python.la libtool: warning: relinking 'ContourToMesh_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o ContourToMesh_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../ContourToMesh/ContourToMesh_python_la-ContourToMesh.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/ContourToMesh_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/ContourToMesh_python.so libtool: install: /usr/bin/install -c .libs/ContourToMesh_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/ContourToMesh_python.la libtool: warning: relinking 'ContourToNodes_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o ContourToNodes_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../ContourToNodes/ContourToNodes_python_la-ContourToNodes.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/ContourToNodes_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/ContourToNodes_python.so libtool: install: /usr/bin/install -c .libs/ContourToNodes_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/ContourToNodes_python.la libtool: warning: relinking 'ElementConnectivity_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o ElementConnectivity_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../ElementConnectivity/ElementConnectivity_python_la-ElementConnectivity.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/ElementConnectivity_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/ElementConnectivity_python.so libtool: install: /usr/bin/install -c .libs/ElementConnectivity_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/ElementConnectivity_python.la libtool: warning: relinking 'ExpToLevelSet_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o ExpToLevelSet_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../ExpToLevelSet/ExpToLevelSet_python_la-ExpToLevelSet.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/ExpToLevelSet_python.so libtool: install: /usr/bin/install -c .libs/ExpToLevelSet_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/ExpToLevelSet_python.la libtool: warning: relinking 'InterpFromGridToMesh_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o InterpFromGridToMesh_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../InterpFromGridToMesh/InterpFromGridToMesh_python_la-InterpFromGridToMesh.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromGridToMesh_python.so libtool: install: /usr/bin/install -c .libs/InterpFromGridToMesh_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromGridToMesh_python.la libtool: warning: relinking 'InterpFromMesh2d_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o InterpFromMesh2d_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../InterpFromMesh2d/InterpFromMesh2d_python_la-InterpFromMesh2d.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMesh2d_python.so libtool: install: /usr/bin/install -c .libs/InterpFromMesh2d_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMesh2d_python.la libtool: warning: relinking 'InterpFromMeshToGrid_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToGrid_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../InterpFromMeshToGrid/InterpFromMeshToGrid_python_la-InterpFromMeshToGrid.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToGrid_python.so libtool: install: /usr/bin/install -c .libs/InterpFromMeshToGrid_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToGrid_python.la libtool: warning: relinking 'InterpFromMeshToMesh2d_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh2d_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../InterpFromMeshToMesh2d/InterpFromMeshToMesh2d_python_la-InterpFromMeshToMesh2d.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToMesh2d_python.so libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh2d_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToMesh2d_python.la libtool: warning: relinking 'InterpFromMeshToMesh3d_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o InterpFromMeshToMesh3d_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../InterpFromMeshToMesh3d/InterpFromMeshToMesh3d_python_la-InterpFromMeshToMesh3d.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort -lpthread -lrt ) libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToMesh3d_python.so libtool: install: /usr/bin/install -c .libs/InterpFromMeshToMesh3d_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/InterpFromMeshToMesh3d_python.la libtool: warning: relinking 'IssmConfig_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o IssmConfig_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../IssmConfig/IssmConfig_python_la-IssmConfig.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/IssmConfig_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/IssmConfig_python.so libtool: install: /usr/bin/install -c .libs/IssmConfig_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/IssmConfig_python.la libtool: warning: relinking 'MeshPartition_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o MeshPartition_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../MeshPartition/MeshPartition_python_la-MeshPartition.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/MeshPartition_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/MeshPartition_python.so libtool: install: /usr/bin/install -c .libs/MeshPartition_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/MeshPartition_python.la libtool: warning: relinking 'MeshProfileIntersection_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o MeshProfileIntersection_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../MeshProfileIntersection/MeshProfileIntersection_python_la-MeshProfileIntersection.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/MeshProfileIntersection_python.so libtool: install: /usr/bin/install -c .libs/MeshProfileIntersection_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/MeshProfileIntersection_python.la libtool: warning: relinking 'NodeConnectivity_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o NodeConnectivity_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../NodeConnectivity/NodeConnectivity_python_la-NodeConnectivity.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/NodeConnectivity_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/NodeConnectivity_python.so libtool: install: /usr/bin/install -c .libs/NodeConnectivity_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/NodeConnectivity_python.la libtool: warning: relinking 'Triangle_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o Triangle_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../Triangle/Triangle_python_la-Triangle.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/triangle/install/lib -ltriangle -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/Triangle_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/Triangle_python.so libtool: install: /usr/bin/install -c .libs/Triangle_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/Triangle_python.la libtool: warning: relinking 'ProcessRifts_python.la' libtool: install: (cd /home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python; /bin/bash "/home/jenkins/workspace/Debian_Linux-Python/libtool" --silent --tag CXX --mode=relink g++ -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER -D_HAVE_PYTHON_MODULES_ -DNPY_NO_DEPRECATED_API -fPIC -D_WRAPPERS_ -g -O2 -fPIC -std=c++11 -D_DO_NOT_LOAD_GLOBALS_ -g -O2 -module -shared -shrext .so -no-undefined --no-warnings --export-dynamic -rdynamic -avoid-version -o ProcessRifts_python.la -rpath /home/jenkins/workspace/Debian_Linux-Python/lib ../ProcessRifts/ProcessRifts_python_la-ProcessRifts.lo -L/usr/lib/x86_64-linux-gnu -lpython3.7m ./libISSMPython.la ../../c/libISSMModules.la ../../c/libISSMCore.la ./libISSMApi.la -L/usr/lib/x86_64-linux-gnu -lgfortran -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lpetsc -ldl -lparmetis -lmetis -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lscalapack -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lflapack -lfblas -L/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort ) libtool: install: /usr/bin/install -c .libs/ProcessRifts_python.soT /home/jenkins/workspace/Debian_Linux-Python/lib/ProcessRifts_python.so libtool: install: /usr/bin/install -c .libs/ProcessRifts_python.lai /home/jenkins/workspace/Debian_Linux-Python/lib/ProcessRifts_python.la libtool: finish: PATH="/home/jenkins/workspace/Debian_Linux-Python/externalpackages/petsc/install/bin:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/cmake/install/bin:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/autotools/install/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/jenkins/workspace/Debian_Linux-Python/aux-config:/home/jenkins/workspace/Debian_Linux-Python/scripts:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/dyson/:/home/jenkins/workspace/Debian_Linux-Python/externalpackages/shell2junit/install:/sbin" ldconfig -n /home/jenkins/workspace/Debian_Linux-Python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/jenkins/workspace/Debian_Linux-Python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers/python' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[4]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src/wrappers' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[3]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python/src' make[1]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python' make[2]: Entering directory '/home/jenkins/workspace/Debian_Linux-Python' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python' make[1]: Leaving directory '/home/jenkins/workspace/Debian_Linux-Python' --------------Running Python test for Rank 1--------------------- --------------Running Python test for Rank 1--------------------- --------------Running Python test for Rank 2--------------------- --------------Running Python test for Rank 2--------------------- Waiting on: 25590 Waiting on: 25591 This is the concatenation phase for rank: python_log1.log This is the concatenation phase for rank: python_log2.log +++ Removing old junit reports from: /home/jenkins/workspace/Debian_Linux-Python/nightlylog/results Recording test results Publishing build last changes... Last changes from revision 28252 (current) to 28251 (previous) published successfully! Finished: SUCCESS