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Started by GitHub push by MathieuMorlighem
Running as SYSTEM
Building remotely on Windows_10-MSYS2-MinGW-VM (mingw win) in workspace C:\Users\jenkins\Jenkins\workspace\Windows-Basic
The recommended git tool is: NONE
 > git rev-parse --resolve-git-dir C:\Users\jenkins\Jenkins\workspace\Windows-Basic\.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10
Fetching upstream changes from git@github.com:ISSMteam/ISSM.git
 > git --version # timeout=10
 > git --version # 'git version 2.47.1'
using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins
Verifying host key using known hosts file
You're using 'Known hosts file' strategy to verify ssh host keys, but your known_hosts file does not exist, please go to 'Manage Jenkins' -> 'Security' -> 'Git Host Key Verification Configuration' and configure host key verification.
 > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse "refs/remotes/origin/main^{commit}" # timeout=10
Checking out Revision c8946ee0cf07a8b075e02a912e86e34e8870c176 (refs/remotes/origin/main)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c8946ee0cf07a8b075e02a912e86e34e8870c176 # timeout=10
Commit message: "CHG: improved performance of SetValues"
 > git rev-list --no-walk 468b63e4a9c855f9b2d0fbae67559344f7b8a414 # timeout=10
[Windows-Basic] $ C:\msys64\usr\bin\bash C:\Users\jenkins\jenkins14262081327086167106.sh
Cleaning up execution directory
======================================================
             Determining installation type            
======================================================
   
List of changed files
---------------------
src/c/toolkits/issm/SparseRow.h
   
-- checking for changed externalpackages... no
-- checking for reconfiguration... no
-- checking for recompilation... yes
======================================================
       Skipping msmpi                          
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       Skipping petsc                          
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       Skipping triangle                          
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       Skipping m1qn3                          
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       Skipping semic                          
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       Skipping shell2junit                          
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                    Compiling ISSM                    
======================================================
Making with 4 CPUs
make  all-recursive
make[1]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic'
Making all in src
make[2]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src'
Making all in c
make[3]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src/c'
  CXX      main/issm-issm.o
  CXX      bamg/libISSMCore_la-BamgGeom.lo
  CXX      bamg/libISSMCore_la-BamgMesh.lo
  CXX      bamg/libISSMCore_la-BamgOpts.lo
  CXX      bamg/libISSMCore_la-CrackedEdge.lo
  CXX      bamg/libISSMCore_la-Curve.lo
  CXX      bamg/libISSMCore_la-Edge.lo
  CXX      bamg/libISSMCore_la-GeomEdge.lo
  CXX      bamg/libISSMCore_la-GeomSubDomain.lo
  CXX      bamg/libISSMCore_la-GeomVertex.lo
  CXX      bamg/libISSMCore_la-Geometry.lo
  CXX      bamg/libISSMCore_la-ListofIntersectionTriangles.lo
  CXX      bamg/libISSMCore_la-EigenMetric.lo
  CXX      bamg/libISSMCore_la-Metric.lo
  CXX      bamg/libISSMCore_la-BamgQuadtree.lo
  CXX      bamg/libISSMCore_la-SetOfE4.lo
  CXX      bamg/libISSMCore_la-SubDomain.lo
  CXX      bamg/libISSMCore_la-AdjacentTriangle.lo
  CXX      bamg/libISSMCore_la-Triangle.lo
  CXX      bamg/libISSMCore_la-BamgVertex.lo
  CXX      bamg/libISSMCore_la-VertexOnEdge.lo
  CXX      bamg/libISSMCore_la-VertexOnGeom.lo
  CXX      bamg/libISSMCore_la-VertexOnVertex.lo
  CXX      bamg/libISSMCore_la-Mesh.lo
  CXX      modules/Bamgx/libISSMCore_la-Bamgx.lo
  CXX      modules/BamgConvertMeshx/libISSMCore_la-BamgConvertMeshx.lo
  CXX      modules/BamgTriangulatex/libISSMCore_la-BamgTriangulatex.lo
  CXX      classes/libISSMCore_la-AmrBamg.lo
  CXX      datastructures/libISSMCore_la-DataSet.lo
  CXX      classes/gauss/libISSMCore_la-GaussSeg.lo
  CXX      classes/gauss/libISSMCore_la-GaussTria.lo
  CXX      classes/gauss/libISSMCore_la-GaussTetra.lo
  CXX      classes/gauss/libISSMCore_la-GaussPenta.lo
  CXX      classes/libISSMCore_la-IoModel.lo
  CXX      classes/libISSMCore_la-FemModel.lo
  CXX      classes/Loads/libISSMCore_la-Friction.lo
  CXX      classes/Constraints/libISSMCore_la-SpcTransient.lo
./classes/IoModel.cpp: In member function 'void IoModel::FetchConstants()':
./classes/IoModel.cpp:764:51: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
  764 |                                         fseek(fid,-sizeof(int),SEEK_CUR); //backtrak 1 integer
      |                                                   ^~~~~~~~~~~~
./classes/IoModel.cpp: In member function 'fpos_t* IoModel::SetFilePointersToData(int**, int**, int*, const char*)':
./classes/IoModel.cpp:3064:80: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
 3064 |                                 if(5<=record_code && record_code<=7) fseek(fid,-sizeof(int),SEEK_CUR); /*rewind for nodal or elementary type*/
      |                                                                                ^~~~~~~~~~~~
./classes/IoModel.cpp:3065:43: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
 3065 |                                 fseek(fid,-sizeof(int),SEEK_CUR);/*rewind for data code*/
      |                                           ^~~~~~~~~~~~
./classes/IoModel.cpp:3066:43: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551608' to '-8' [-Woverflow]
 3066 |                                 fseek(fid,-sizeof(long long),SEEK_CUR);/*rewind for record length*/
      |                                           ^~~~~~~~~~~~~~~~~~
  CXX      classes/libISSMCore_la-DependentObject.lo
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  CXX      classes/Materials/libISSMCore_la-Matice.lo
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  CXX      shared/Matrix/libISSMCore_la-MatrixUtils.lo
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  CXX      shared/io/Comm/libISSMCore_la-IssmComm.lo
  CXX      shared/io/Marshalling/libISSMCore_la-IoCodeConversions.lo
  CXX      shared/io/Marshalling/libISSMCore_la-Marshalling.lo
  CXX      shared/LatLong/libISSMCore_la-Ll2xyx.lo
  CXX      shared/LatLong/libISSMCore_la-Xy2llx.lo
  CXX      shared/FSanalyticals/libISSMCore_la-fsanalyticals.lo
  CXX      shared/Enum/libISSMCore_la-EnumToStringx.lo
  CXX      shared/Enum/libISSMCore_la-StringToEnumx.lo
  CXX      shared/Numerics/libISSMCore_la-Verbosity.lo
  CXX      shared/Numerics/libISSMCore_la-GaussPoints.lo
  CXX      shared/Numerics/libISSMCore_la-cross.lo
  CXX      shared/Numerics/libISSMCore_la-cubic.lo
  CXX      shared/Numerics/libISSMCore_la-NewtonSolveDnorm.lo
  CXX      shared/Numerics/libISSMCore_la-ODE1.lo
  CXX      shared/Numerics/libISSMCore_la-extrema.lo
  CXX      shared/Numerics/libISSMCore_la-legendre.lo
  CXX      shared/Numerics/libISSMCore_la-XZvectorsToCoordinateSystem.lo
  CXX      shared/Numerics/libISSMCore_la-Normals.lo
  CXX      shared/Exceptions/libISSMCore_la-Exceptions.lo
  CXX      shared/Sorting/libISSMCore_la-binary_search.lo
  CXX      shared/Elements/libISSMCore_la-Cuffey.lo
  CXX      shared/Elements/libISSMCore_la-BuddJacka.lo
  CXX      shared/Elements/libISSMCore_la-CuffeyTemperate.lo
  CXX      shared/Elements/libISSMCore_la-StressIntensityIntegralWeight.lo
  CXX      shared/Elements/libISSMCore_la-Paterson.lo
  CXX      shared/Elements/libISSMCore_la-Arrhenius.lo
  CXX      shared/Elements/libISSMCore_la-NyeCO2.lo
  CXX      shared/Elements/libISSMCore_la-NyeH2O.lo
  CXX      shared/Elements/libISSMCore_la-LliboutryDuval.lo
  CXX      shared/Elements/libISSMCore_la-PrintArrays.lo
  CXX      shared/Elements/libISSMCore_la-PddSurfaceMassBalance.lo
  CXX      shared/Elements/libISSMCore_la-PddSurfaceMassBalanceSicopolis.lo
  CXX      shared/Elements/libISSMCore_la-ComputeDelta18oTemperaturePrecipitation.lo
  CXX      shared/Elements/libISSMCore_la-ComputeMungsmTemperaturePrecipitation.lo
  CXX      shared/Elements/libISSMCore_la-ComputeD18OTemperaturePrecipitationFromPD.lo
  CXX      shared/Elements/libISSMCore_la-DrainageFunctionWaterfraction.lo
  CXX      shared/Elements/libISSMCore_la-EstarComponents.lo
  CXX      shared/Random/libISSMCore_la-random.lo
  CXX      shared/Random/libISSMCore_la-randomgenerator.lo
  CXX      shared/String/libISSMCore_la-DescriptorIndex.lo
  CXX      toolkits/issm/libISSMCore_la-IssmToolkitUtils.lo
  CXX      toolkits/issm/libISSMCore_la-IssmSolver.lo
  CXX      toolkits/mpi/libISSMCore_la-issmmpi.lo
  CXX      toolkits/mpi/commops/libISSMCore_la-DetermineLocalSize.lo
  CXX      toolkits/mpi/commops/libISSMCore_la-DetermineGlobalSize.lo
  CXX      toolkits/mpi/commops/libISSMCore_la-DetermineRowRankFromLocalSize.lo
  CXX      toolkits/mpi/commops/libISSMCore_la-GetOwnershipBoundariesFromRange.lo
  CXX      toolkits/libISSMCore_la-ToolkitOptions.lo
  CXX      modules/MmeToInputFromIdx/libISSMCore_la-MmeToInputFromIdx.lo
  CXX      modules/MmeToInputx/libISSMCore_la-MmeToInputx.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-ModelProcessorx.lo
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  CXX      modules/ModelProcessorx/libISSMCore_la-NodesPartitioning.lo
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  CXX      modules/ModelProcessorx/libISSMCore_la-CreateParameters.lo
  CXX      modules/ModelProcessorx/Autodiff/libISSMCore_la-CreateParametersAutodiff.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateFaces.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateEdges.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateSingleNodeToElementConnectivity.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateNumberNodeToElementConnectivity.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateElementsVerticesAndMaterials.lo
  CXX      modules/ModelProcessorx/libISSMCore_la-CreateNodes.lo
  CXX      modules/ParseToolkitsOptionsx/libISSMCore_la-ParseToolkitsOptionsx.lo
  CXX      modules/NodesDofx/libISSMCore_la-NodesDofx.lo
  CXX      modules/NodalValuex/libISSMCore_la-NodalValuex.lo
  CXX      modules/VertexCoordinatesx/libISSMCore_la-VertexCoordinatesx.lo
  CXX      modules/ElementCoordinatesx/libISSMCore_la-ElementCoordinatesx.lo
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  CXX      modules/InputDepthAverageAtBasex/libISSMCore_la-InputDepthAverageAtBasex.lo
  CXX      modules/InputDuplicatex/libISSMCore_la-InputDuplicatex.lo
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  CXX      modules/SurfaceAreax/libISSMCore_la-SurfaceAreax.lo
  CXX      modules/AllocateSystemMatricesx/libISSMCore_la-AllocateSystemMatricesx.lo
  CXX      modules/CreateJacobianMatrixx/libISSMCore_la-CreateJacobianMatrixx.lo
  CXX      modules/SystemMatricesx/libISSMCore_la-SystemMatricesx.lo
  CXX      modules/CreateNodalConstraintsx/libISSMCore_la-CreateNodalConstraintsx.lo
  CXX      modules/UpdateDynamicConstraintsx/libISSMCore_la-UpdateDynamicConstraintsx.lo
  CXX      modules/IoModelToConstraintsx/libISSMCore_la-IoModelToConstraintsx.lo
  CXX      modules/SetActiveNodesLSMx/libISSMCore_la-SetActiveNodesLSMx.lo
  CXX      modules/InputUpdateFromConstantx/libISSMCore_la-InputUpdateFromConstantx.lo
  CXX      modules/InputUpdateFromSolutionx/libISSMCore_la-InputUpdateFromSolutionx.lo
  CXX      modules/GeothermalFluxx/libISSMCore_la-GeothermalFluxx.lo
  CXX      modules/GetSolutionFromInputsx/libISSMCore_la-GetSolutionFromInputsx.lo
  CXX      modules/GetVectorFromInputsx/libISSMCore_la-GetVectorFromInputsx.lo
  CXX      modules/InputUpdateFromVectorx/libISSMCore_la-InputUpdateFromVectorx.lo
  CXX      modules/FloatingiceMeltingRatex/libISSMCore_la-FloatingiceMeltingRatex.lo
  CXX      modules/FloatingiceMeltingRatePicox/libISSMCore_la-FloatingiceMeltingRatePicox.lo
  CXX      modules/FrontalForcingsx/libISSMCore_la-FrontalForcingsx.lo
  CXX      modules/ConfigureObjectsx/libISSMCore_la-ConfigureObjectsx.lo
  CXX      modules/SpcNodesx/libISSMCore_la-SpcNodesx.lo
  CXX      modules/SurfaceMassBalancex/libISSMCore_la-SurfaceMassBalancex.lo
  CXX      modules/SurfaceMassBalancex/libISSMCore_la-Gembx.lo
  CXX      modules/Reducevectorgtofx/libISSMCore_la-Reducevectorgtofx.lo
  CXX      modules/Reduceloadx/libISSMCore_la-Reduceloadx.lo
  CXX      modules/ConstraintsStatex/libISSMCore_la-ConstraintsStatex.lo
  CXX      modules/ResetConstraintsx/libISSMCore_la-ResetConstraintsx.lo
  CXX      modules/ResetFSBasalBoundaryConditionx/libISSMCore_la-ResetFSBasalBoundaryConditionx.lo
  CXX      modules/Solverx/libISSMCore_la-Solverx.lo
  CXX      modules/StochasticForcingx/libISSMCore_la-StochasticForcingx.lo
  CXX      modules/Mergesolutionfromftogx/libISSMCore_la-Mergesolutionfromftogx.lo
  CXX      modules/UpdateMmesx/libISSMCore_la-UpdateMmesx.lo
  CXX      cores/libISSMCore_la-ProcessArguments.lo
  CXX      cores/libISSMCore_la-ResetBoundaryConditions.lo
  CXX      cores/libISSMCore_la-WrapperCorePointerFromSolutionEnum.lo
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  CXX      cores/libISSMCore_la-CorePointerFromSolutionEnum.lo
  CXX      cores/libISSMCore_la-ad_core.lo
  CXX      main/libISSMCore_la-EnvironmentInit.lo
  CXX      main/libISSMCore_la-EnvironmentFinalize.lo
  CXX      analyses/libISSMCore_la-EnumToAnalysis.lo
  CXX      solutionsequences/libISSMCore_la-solutionsequence_la.lo
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  CXX      main/issm_slc-issm_slc.o
  CXX      main/kriging-kriging.o
  CXXLD    libISSMCore.la
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/14.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/crtbegin.o: No such file or directory
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/14.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/crtend.o: No such file or directory
collect2.exe: error: ld returned 1 exit status
make[3]: *** [Makefile:4886: libISSMCore.la] Error 1
make[3]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src/c'
make[2]: *** [Makefile:467: all-recursive] Error 1
make[2]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src'
make[1]: *** [Makefile:523: all-recursive] Error 1
make[1]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic'
make: *** [Makefile:455: all] Error 2
 
Compilation failed, trying to compile with only one thread
 
make  all-recursive
make[1]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic'
Making all in src
make[2]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src'
Making all in c
make[3]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src/c'
  CXXLD    libISSMCore.la
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/14.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/crtbegin.o: No such file or directory
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/14.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/crtend.o: No such file or directory
collect2.exe: error: ld returned 1 exit status
make[3]: *** [Makefile:4886: libISSMCore.la] Error 1
make[3]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src/c'
make[2]: *** [Makefile:467: all-recursive] Error 1
make[2]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic/src'
make[1]: *** [Makefile:523: all-recursive] Error 1
make[1]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Basic'
make: *** [Makefile:455: all] Error 2
ISSM_COMPILATION failed!
Build step 'Execute shell' marked build as failure
Recording test results
Finished: FAILURE