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#93 (Jul 28, 2024, 1:04:24 PM)

Started 5 mo 16 days ago
Took 3 hr 3 min on macOS-Intel

Started by user Justin Quinn

Revision: 3a68cbfc647fd6680b6931b32abc69bf77dafa94
Repository: git@github.com:ISSMteam/ISSM.git
  • refs/remotes/origin/main
Changes
  1. CHG: multithreading ContourToNodes (commit: 1e79391) (details / githubweb)
  2. BUG: mexPrintf is NOT thread safe and crashes. Replace by printf (commit: 9474be9) (details / githubweb)
  3. CHG: Temporary fix for not being able to connect via port 22 (commit: a83fea6) (details / githubweb)
  4. CHG: Need P instead of p option (commit: cf35b4b) (details / githubweb)
  5. CHG: added PROJ_LIB env variable to make sure proj.db is found. There are sometimes conflicts with MATLAB's libraries which must be taken care of (commit: a75b963) (details / githubweb)
  6. CHG: minor changed ISSM description (commit: bdd72f6) (details / githubweb)
  7. CHG: ITS_LIVE annual velocity updated to v02, data avaliable from 1985 to 2022. The .nc files are in netCDF4 format, to load in Matlab, we need to use `h5read` (commit: 43146cb) (details / githubweb)
  8. ADD: interpolate from MEaSUREs monthly averaged velocity Mosaic (2014-2023) : https://doi.org/10.5067/EGKZX6FXXM4P (commit: dbcc688) (details / githubweb)
  9. CHG: use mapping toolbox map if Googlemaps is not available (commit: d980ed3) (details / githubweb)
  10. CHG: fixed zoom level option (commit: 83cdc8c) (details / githubweb)
  11. CHG: adjusted tolerances (commit: 86dd813) (details / githubweb)
  12. CHG: added interactive to disp: (commit: 23bf349) (details / githubweb)
  13. Added time and memory output for CoDiPack. (commit: 31dab70) (details / githubweb)
  14. Make preaccumulation configurable. (commit: b741196) (details / githubweb)
  15. Create c-cpp.yml (commit: 8d1129b) (details / githubweb)
  16. Update c-cpp.yml (commit: 57e71e6) (details / githubweb)
  17. CHG: changed checks on flags (commit: 8a0fac6) (details / githubweb)
  18. CHG: need to initialize as 0 (commit: 1c719e0) (details / githubweb)
  19. Update c-cpp.yml (commit: c6b61c1) (details / githubweb)
  20. Update c-cpp.yml (commit: 533d30c) (details / githubweb)
  21. Update c-cpp.yml (commit: 5a3ec47) (details / githubweb)
  22. Update c-cpp.yml (commit: 571d041) (details / githubweb)
  23. Update c-cpp.yml, add matlab (commit: 2f464c6) (details / githubweb)
  24. Update c-cpp.yml (commit: b78ae06) (details / githubweb)
  25. Update c-cpp.yml (commit: df8b3b6) (details / githubweb)
  26. Create github_linux_basic (commit: 5b34d72) (details / githubweb)
  27. Update c-cpp.yml (commit: d3045ed) (details / githubweb)
  28. Update c-cpp.yml (commit: 42c18ea) (details / githubweb)
  29. change the directory for CI files (commit: 13f902e) (details / githubweb)
  30. Update README.md (commit: cc2ad67) (details / githubweb)
  31. Update README.md (commit: a1131fe) (details / githubweb)
  32. create badge for CI, add it to README (commit: 684ad98) (details / githubweb)
  33. CHG: minor (commit: 9092bf4) (details / githubweb)
  34. BUG: forgot to close parenthesis (commit: 2e01ed8) (details / githubweb)
  35. CHG: upgrading PETSc in order to find latest ZLIB (commit: b3dbeeb) (details / githubweb)
  36. FIX: calculation of VAF based on mask in Tria.cpp (commit: 1f9cd7f) (details / githubweb)
  37. CHG: trying to simplify CI (commit: f1e8d22) (details / githubweb)
  38. CHG: trying to simplify CI (commit: db0c094) (details / githubweb)
  39. CHG: getting PETSc from apt-get (commit: 4fbda8b) (details / githubweb)
  40. CHG: PETSc needs to be installed manually, but we can skip autotools and cmake (commit: 5059e9c) (details / githubweb)
  41. BUG: fixing CI problem (commit: 8350f08) (details / githubweb)
  42. CHG: trying to fix CI (commit: 65c0f6e) (details / githubweb)
  43. CHG: trying to fix CI (commit: 2ed9f19) (details / githubweb)
  44. CHG: trying to fix CI (commit: b6cd13d) (details / githubweb)
  45. CHG: trying to fix CI (commit: 2e0f8b8) (details / githubweb)
  46. Update README.md (commit: 9661eba) (details / githubweb)
  47. NEW: added option 'quitonerror' for GitHub's CI (commit: cc5f201) (details / githubweb)
  48. CHG: fixing matlab tests in GitHub CI (commit: 246bda2) (details / githubweb)
  49. CHG: trying to fix CI with MATLAB (commit: 7f9ba8b) (details / githubweb)
  50. CHG: trying to debug CI (commit: c4ee45e) (details / githubweb)
  51. CHG: trying to add MATLAB tests (commit: 031c116) (details / githubweb)
  52. CHG: fixing MATLAB (commit: a979171) (details / githubweb)
  53. load matlab action manually (commit: 0bc0f3c) (details / githubweb)
  54. FIX: updated archive 540 (commit: 2ba99c0) (details / githubweb)
  55. CHG: checking env (commit: 2538728) (details / githubweb)
  56. CHG: checking env (commit: a359b8b) (details / githubweb)
  57. CHG: checking env (commit: f597fb4) (details / githubweb)
  58. CHG: checking env (commit: ce37a17) (details / githubweb)
  59. CHG: checking env (commit: d5f69f3) (details / githubweb)
  60. CHG: checking env (commit: d2964e7) (details / githubweb)
  61. set environment before running matlab (commit: 76e3036) (details / githubweb)
  62. Update c-cpp.yml (commit: e30c029) (details / githubweb)
  63. Update c-cpp.yml (commit: 7b61081) (details / githubweb)
  64. Update c-cpp.yml (commit: 168094e) (details / githubweb)
  65. Update c-cpp.yml (commit: 21920c7) (details / githubweb)
  66. CHG: fixed typo (commit: 70b01e1) (details / githubweb)
  67. NEW: added a function that reads a geotiff and outputs x,y,data (commit: d78e873) (details / githubweb)
  68. CHG: better check on METIS header (commit: 05cd86f) (details / githubweb)
  69. CHG: removing PETSc from installation (commit: 8eceb90) (details / githubweb)
  70. CHG: install openMPI (commit: df04386) (details / githubweb)
  71. CHG: figuring out open MPI (commit: f6e9ef8) (details / githubweb)
  72. CHG: mpi-include does not need -I (commit: 44a9842) (details / githubweb)
  73. CHG: scalapack is installed as part of open MPI (commit: dc05929) (details / githubweb)
  74. CHG: do not assume that ParMETIS is installed if MUMPS is provided (commit: a31e6d3) (details / githubweb)
  75. CHG: do not preload petsc files if petsc is not installed (commit: 0a97081) (details / githubweb)
  76. CHG: reverting to installing PETSc (commit: d0fde5f) (details / githubweb)
  77. CHG: simplifying workflow and scripts (commit: 382596b) (details / githubweb)
  78. CHG: change name (commit: 54b070a) (details / githubweb)
  79. CHG: removing MPICH from PETSc to speed up CI (commit: 2f9390b) (details / githubweb)
  80. CHG: adding more libs to mpi (commit: 15d7142) (details / githubweb)
  81. CHG: forgot to change LD_PRELOAD (commit: 7c3cac2) (details / githubweb)
  82. CHG: adding flag to mpiexec to avoid openmpi error message about 'There are not enough slots available' (commit: 48737e1) (details / githubweb)
  83. CHG: do not make MeshPartition a template (commit: 6bfebab) (details / githubweb)
  84. CHG: added example (commit: c8b520e) (details / githubweb)
  85. BUG: do not initialize codi_global if autodiff is false (commit: 4dc2ae2) (details / githubweb)
  86. CHG: Added packages to UB CCR installation; do not compile MeshPartition if METIS is not available (commit: 787af96) (details / githubweb)
  87. try to set two steps for the CI (commit: f400850) (details / githubweb)
  88. try to add cache (commit: ad75a7b) (details / githubweb)
  89. try to set the path for cache (commit: 6ed91f0) (details / githubweb)
  90. try again with env variable (commit: 750c718) (details / githubweb)
  91. update download path in artifact (commit: 13af998) (details / githubweb)
  92. try to also cache matlab (commit: 5de8374) (details / githubweb)
  93. change mpi back to petsc version (commit: 4e142f4) (details / githubweb)
  94. no need to cache matlab (commit: 239ff87) (details / githubweb)
  95. cache matlab (commit: f6f2916) (details / githubweb)
  96. try the uncompress path again (commit: a175878) (details / githubweb)
  97. download to /root (commit: 03b51c1) (details / githubweb)
  98. try to use relative path (commit: 8f3ee6d) (details / githubweb)
  99. add relative path (commit: fa1031b) (details / githubweb)
  100. change relative path again (commit: 91d425f) (details / githubweb)
  101. typo fixed (commit: 1fe7196) (details / githubweb)
  102. update working dir (commit: 1be644a) (details / githubweb)
  103. activate compile (commit: 64d3590) (details / githubweb)
  104. put test back (commit: 8cd2297) (details / githubweb)
  105. remove apt-get installed mpi (commit: 45287e7) (details / githubweb)
  106. try to create a matrix of test (commit: 7baf86f) (details / githubweb)
  107. try matrix with string variables (commit: 6fc2d49) (details / githubweb)
  108. add codipack in CI (commit: 909790b) (details / githubweb)
  109. try to fix codipack configure (commit: 093a11e) (details / githubweb)
  110. add gsl (commit: 884b5f0) (details / githubweb)
  111. seperate basic and codipack (commit: 7283804) (details / githubweb)
  112. Update common-workflow.yml (commit: 0ce30b9) (details / githubweb)
  113. only include ad tests for ccdipack (commit: 92c4d5e) (details / githubweb)
  114. fix bug in main-ci (commit: e2e12b5) (details / githubweb)
  115. set different names for different runs (commit: 0bde952) (details / githubweb)
  116. add type of input.os (commit: bb088f1) (details / githubweb)
  117. try to cache src/c (commit: 1df6ca5) (details / githubweb)
  118. fix error in the test job (commit: 63ba042) (details / githubweb)
  119. remove cache src/c (commit: e253f84) (details / githubweb)
  120. try petsc-3.20 for ad (commit: 69212ab) (details / githubweb)
  121. try to use env to set the id of cache (commit: b7973ce) (details / githubweb)
  122. try github.env (commit: 1e05474) (details / githubweb)
  123. try to fix bugs when using inputs in cache id (commit: 18ac845) (details / githubweb)
  124. fix bug in the if condition (commit: 1f4a9f4) (details / githubweb)
  125. fix codipack (commit: fae90a5) (details / githubweb)
  126. try ad again (commit: 66e4f82) (details / githubweb)
  127. CHG: added error message instead of just bypassing (commit: 1aa4555) (details / githubweb)
  128. CHG: for macOS we now also need to add  -commons use_dylibs (commit: eddbc51) (details / githubweb)
  129. BUG: need to provide specific LD_FLAGS and tweak setCompiler.py to make it work on Sonoma (commit: 2364937) (details / githubweb)
  130. CHG: cleanup (commit: 14d761f) (details / githubweb)
  131. remove with-petsc in codipack (commit: b35a114) (details / githubweb)
  132. reduce matrix size for tests (commit: 4671a46) (details / githubweb)
  133. check spaces (commit: 5ccd274) (details / githubweb)
  134. turn off codipack tests (commit: 3f44b86) (details / githubweb)
  135. do not compress petsc/src/ to decrease the size of the artifact (commit: 38f993e) (details / githubweb)
  136. try to exclude petsc/src (commit: 29dbe16) (details / githubweb)
  137. add gsl to codipack version (commit: 8bb700f) (details / githubweb)
  138. CHG: calving rate in CalvingMIP use normal vector from the levelset (commit: 8b089ab) (details / githubweb)
  139. Update README.md (commit: 81ee094) (details / githubweb)
  140. Update README.md (commit: d3c04a9) (details / githubweb)
  141. Update action badge in README.md (commit: ba30c85) (details / githubweb)
  142. CHG: default md.levelset.reinit_frequency=10. Add more description to stabilization (commit: b5d77dd) (details / githubweb)
  143. CHG: make two CIs separately for Ubuntu basic and codipack (commit: 2b5a6ff) (details / githubweb)
  144. CHG: Update test540, due to update default reinit_frequency (commit: 3e9e691) (details / githubweb)
  145. change the way to reuse workflow (commit: 1e8a29b) (details / githubweb)
  146. hard code the version of configure ISSM for now (commit: 80151a8) (details / githubweb)
  147. BUG: fix CalvingCalvingMIP in Penta (commit: b2de648) (details / githubweb)
  148. fix bugs in action.yml (commit: 830d14b) (details / githubweb)
  149. separate prepare externalpackes and build (commit: d8e2dd1) (details / githubweb)
  150. test ISSM_DIR (commit: fa789b6) (details / githubweb)
  151. Update action.yml (commit: 5aa39ba) (details / githubweb)
  152. fix ISSM_DIR issue (commit: 8bd8575) (details / githubweb)
  153. rerun CI, make input name shorter (commit: ca8a4ee) (details / githubweb)
  154. fix bug in action.yml (commit: 73c3538) (details / githubweb)
  155. CHG: update Archive540 (commit: 8c4f19d) (details / githubweb)
  156. rerun full CI (commit: 886c972) (details / githubweb)
  157. fix bug in uploading artifact (commit: c64a63f) (details / githubweb)
  158. BUG: fix CalvingCalvingMIP (commit: d8bbe33) (details / githubweb)
  159. BUG: recompile ISSM, update test540 Archive (commit: bdff019) (details / githubweb)
  160. CHG: update Archive affected by levelset.reinit_frequency=10 (commit: 96b1b80) (details / githubweb)
  161. add badges for Ubuntu Basic and CodiPack (commit: a79de1e) (details / githubweb)
  162. CHG: MATLAB -> Python and Javascript (commit: 6a2b0e0) (details / githubweb)
  163. CHG: taking care of paths with white spaces (commit: b801141) (details / githubweb)
  164. CHG: relaxed tolerances for test 541 (commit: 74b8289) (details / githubweb)
  165. CHG: Cleanup (commit: 5495d62) (details / githubweb)
  166. CHG: update to GEMB merge layers to parallel matlab version updates (commit: e068d33) (details / githubweb)
  167. CHG: update GEMB tols for latest commit (commit: 1b6b531) (details / githubweb)
  168. CHG: update remaining tols in windows and on git for GEMB (commit: a727659) (details / githubweb)
  169. CHG: Cleanup of configuration options (commit: 2561795) (details / githubweb)
  170. BUG: Needed closing ;; (commit: bdf2ded) (details / githubweb)
  171. CHG: Removing support for Android (commit: 0db7fc2) (details / githubweb)
  172. CHG: Synchronized enums after pull and merge (commit: 8d404e5) (details / githubweb)
  173. BUG: Cleaned up configs (commit: 9655481) (details / githubweb)
  174. BUG: Correcting env var substitution (commit: 3148eb2) (details / githubweb)
  175. CHG: Cleanup (commit: 36c824f) (details / githubweb)
  176. CHG: Cleanup (commit: fd4f45b) (details / githubweb)
  177. CHG: Moving standard env vars to issm_options for MSYS2 builds (commit: 4977f2a) (details / githubweb)
  178. CHG: Cleanup; missing env var for Javascript build (commit: 53ee210) (details / githubweb)
  179. BUG: Fix for MSYS2 build (commit: 3a68cbf) (details / githubweb)