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Started by user Justin Quinn Running as SYSTEM Building remotely on macOS-Intel (mac) in workspace /Users/jenkins/workspace/macOS-Intel-Binaries-Python-3 The recommended git tool is: NONE using credential 3c85c82b-fb35-4fea-b703-0aa4f155f9c7 Cloning the remote Git repository Cloning repository git@github.com:ISSMteam/ISSM.git > git init /Users/jenkins/workspace/macOS-Intel-Binaries-Python-3 # timeout=10 Fetching upstream changes from git@github.com:ISSMteam/ISSM.git > git --version # timeout=10 > git --version # 'git version 2.37.1 (Apple Git-137.1)' using GIT_SSH to set credentials GitHub Deploy Key - ISSMteam/ISSM - Jenkins Verifying host key using known hosts file > git fetch --tags --force --progress -- git@github.com:ISSMteam/ISSM.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url git@github.com:ISSMteam/ISSM.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision 3a68cbfc647fd6680b6931b32abc69bf77dafa94 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 3a68cbfc647fd6680b6931b32abc69bf77dafa94 # timeout=10 Commit message: "BUG: Fix for MSYS2 build" > git rev-list --no-walk 49f94ddcfc2f3518403841abf45905b83b705cbb # timeout=10 [macOS-Intel-Binaries-Python-3] $ /bin/bash /var/folders/j6/3xhtbkbs3kj24wm4s4s4b99w0000gp/T/****8297542619505707838.sh Cleaning up execution directory ====================================================== Determining installation type ====================================================== Fresh copy of repository; building everything -- checking for changed externalpackages... yes -- checking for reconfiguration... yes -- checking for recompilation... yes ====================================================== Installing autotools ====================================================== ====================================================== Installing cmake ====================================================== ====================================================== Installing petsc ====================================================== ====================================================== Installing gsl ====================================================== ====================================================== Installing boost ====================================================== ====================================================== Installing dakota ====================================================== ====================================================== Installing chaco ====================================================== ====================================================== Installing curl ====================================================== ====================================================== Installing hdf5 ====================================================== ====================================================== Installing netcdf ====================================================== ====================================================== Installing proj ====================================================== ====================================================== Installing gdal ====================================================== ====================================================== Installing gshhg ====================================================== ====================================================== Installing gmt ====================================================== ====================================================== Installing gmsh ====================================================== ====================================================== Installing triangle ====================================================== ====================================================== Installing m1qn3 ====================================================== ====================================================== Installing semic ====================================================== ====================================================== Installing shell2junit ====================================================== ====================================================== Cleaning up and reconfiguring ====================================================== make: *** No rule to make target `uninstall'. Stop. make: *** No rule to make target `distclean'. Stop. autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: configure.ac: creating directory ./aux-config autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'. libtoolize: copying file './aux-config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: running: /Users/****/workspace/macOS-Intel-Binaries-Python-3/externalpackages/autotools/install/bin/autoconf --force autoreconf: running: /Users/****/workspace/macOS-Intel-Binaries-Python-3/externalpackages/autotools/install/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:27: installing './aux-config/ar-lib' configure.ac:17: installing './aux-config/compile' configure.ac:14: installing './aux-config/config.guess' configure.ac:14: installing './aux-config/config.sub' configure.ac:24: installing './aux-config/install-sh' configure.ac:24: installing './aux-config/missing' src/c/Makefile.am: installing './aux-config/depcomp' autoreconf: Leaving directory `.' configure: ============================================================================ configure: = Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration = configure: ============================================================================ checking build system type... x86_64-apple-darwin21.6.0 checking host system type... x86_64-apple-darwin21.6.0 checking target system type... x86_64-apple-darwin21.6.0 checking for icc... no checking for cl... no checking for icl... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for icpc... no checking for cl... no checking for icl... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for ifort... no checking for g77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for ifort... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./aux-config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... none checking dependency style of g++... none checking whether make supports nested variables... (cached) yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/local/opt/gnu-sed/libexec/gnubin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 786432 checking how to convert x86_64-apple-darwin21.6.0 file names to x86_64-apple-darwin21.6.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin21.6.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate configure: ============================================================================ configure: = Checking ISSM specific options = configure: ============================================================================ checking for date... /bin/date checking for build date... Sun Jul 28 16:08:04 PDT 2024 checking user name... **** checking host full OS name and version... darwin21.6.0 checking host cpu... x86_64 checking vendor... apple checking host OS name... darwin21 checking host OS version... 21.6.0 checking host OS architecture... x86_64 checking for debugging support... no checking for development support... no checking for standalone modules build... yes checking for standalone executables build... yes checking for standalone libraries build... yes checking for wrappers compilation... yes checking operating system type... macOS checking if system copy of libc has fmemopen (macOS-only check)... yes checking for MATLAB... no checking for JavaScript... no checking for triangle... yes checking for Boost... yes checking for Boost version... 1.73 checking for Dakota... yes checking for Dakota version... 6.2 checking for Dakota major version... 6 checking for Dakota minor version... 2 checking for Dakota build version... 0 checking for Python... yes enforced Python version is 3.9 checking for Python header file Python.h... found checking for Python library libpython... found checking for python-numpy... yes checking for Chaco... yes checking for ESMF... no checking for CoDiPack... no checking for tape allocation... no checking for ADOL-C... no checking for ADOL-C version... 2 checking for ATLAS and CBLAS libraries... no checking for GSL... yes checking for AMPI... no checking for Adjoint MPI... no checking for MeDiPack... no checking for HDF5 libraries... yes checking for PETSc... yes checking for PETSc version... 3.20 checking whether PETSc is the development version... no checking for PETSc libraries and header files in /Users/****/workspace/macOS-Intel-Binaries-Python-3/externalpackages/petsc/install... done checking for MPI... yes checking for SCOTCH... no checking for METIS... yes checking for ParMETIS... yes checking for TAO... yes checking for M1QN3... yes checking for PROJ... yes checking for shapelib... no checking for ScaLAPACK... yes checking for BLAS/LAPACK... yes checking for MKL... no checking for PlaLAPACK... no checking for MPLAPACK... no checking for MUMPS... yes checking for BLACS... no checking for HYPRE... no checking for Prometheus... no checking for SEMIC... yes checking for SPAI... no checking for SuperLU... no checking for SPOOLES... no checking for PaStiX... no checking for ml... no checking for UMFPACK... no checking for libm... done checking for MATH77... no checking for Fortran compilation... yes checking for Fortran library... configure: error: Fortran library provided (/usr/local/Cellar/gcc/13.2.0/lib/gcc/current/libgfortran.a /usr/local/Cellar/gcc/13.2.0/lib/gcc/current/libquadmath.a /usr/local/Cellar/gcc/13.2.0/lib/gcc/current/gcc/x86_64-apple-darwin21/13/libgcc.a) does not exist! ISSM configuration failed (see options below) \ --prefix=${ISSM_DIR} \ --enable-standalone-executables \ --enable-standalone-modules \ --enable-standalone-libraries \ --disable-dependency-tracking \ --with-python-version=3.9 \ --with-python-dir=/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9 \ --with-python-numpy-dir=/Library/Python/3.9/site-packages/numpy/core/include/numpy \ --with-fortran-lib="${LIBGFORTRAN_PATH}/libgfortran.a ${LIBGFORTRAN_PATH}/libquadmath.a ${LIBGCC_PATH}/libgcc.a" \ --with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \ --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-hdf5-dir=${ISSM_DIR}/externalpackages/hdf5/install \ --with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \ --with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \ --with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \ --with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \ --with-proj-dir=${ISSM_DIR}/externalpackages/proj/install \ --with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \ --with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \ --with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \ ISSM configuration failed! Build step 'Execute shell' marked build as failure Finished: FAILURE