macOS - Silicon - Binaries - MATLAB #154 Changes

Mathieu Morlighem at 11:24 AM 9/27/26

CHG: threshold can be per element or per vertex

cc5ef71

src/m/classes/calvingvonmises.m

mathieu.morlighem at 2:22 PM 9/27/26

CHG: propagating change from matlab to python

7fe0f23

src/m/classes/calvingvonmises.py

mathieu.morlighem at 5:49 PM 9/27/26

CHG: fixing some python files that were different from MATLAB

6ab1505

src/m/solvers/mumpsoptions.py src/m/solvers/conditionnumberoptions.py src/m/solvers/mumpsnoneoptions.py

mathieu.morlighem at 5:56 PM 9/27/26

BUG: Fix memory leak when fetching data in MATLAB.

8049fd3

src/wrappers/matlab/io/FetchMatlabData.cpp

inwoo.park at 4:04 AM 9/28/26

BUG: should not delete indices before the end of the function

baa7cf8

src/c/classes/Elements/Tria.cpp

mathieu.morlighem at 7:24 AM 9/28/26

CHG: checking whether weights_string is actually used, seems like it is just a filler, so we should not request users to define them (+ they need to be Enums which makes it difficult)

97eca9f

src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp

mathieu.morlighem at 7:43 AM 9/28/26

CHG: removing weights_string, it is not needed anymore and super confusing to users, especially since it needs to be an Enum

3d3265e

test/NightlyRun/test3205.m test/NightlyRun/test3201.m test/NightlyRun/test3203.m src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp src/m/classes/cfsurfacesquare.m test/NightlyRun/test3202.m test/NightlyRun/test3206.m test/NightlyRun/test3204.m src/m/classes/cfrheologybbarabsgrad.m src/m/classes/cfdragcoeffabsgrad.m src/m/classes/cflevelsetmisfit.m test/NightlyRun/test3480.m src/m/classes/cfsurfacelogvel.m test/NightlyRun/test3481.m

mathieu.morlighem at 8:03 AM 9/28/26

BUG: fixing ice front area depth calculation

7b6782a

src/c/classes/Elements/Tria.cpp

Mathieu Morlighem at 12:29 PM 9/28/26

NEW: added compatibility for the GRD core with mesh2d (#187)

42eac23

src/c/classes/Vertex.cpp src/m/classes/mesh2d.m src/m/classes/solidearthsettings.m test/NightlyRun/test2095.m src/m/classes/mesh2d.py src/m/contrib/davis/conservative_interp.m src/c/classes/Elements/Tria.cpp src/m/classes/solidearthsettings.py test/Archives/Archive2095.arch src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp src/c/cores/sealevelchange_core.cpp

noreply at 3:34 PM 9/28/26

CHG: adding Greenland velocities from Ian Joughin

dd88bc8

examples/Data/download.sh

mathieu.morlighem at 8:25 AM 9/29/26

CHG: switch to curl -O when wget is unavailable:

82b8ddc

scripts/DownloadExamplesDatasets.sh

mathieu.morlighem at 8:33 AM 9/29/26

CHG: more convenient way to pull satellite imagery from different sources

a0e177a

src/m/plot/imagery.m

Mathieu Morlighem at 5:37 PM 9/29/26

initial IML-GlaDS commit

5a8bbe5

src/c/analyses/HydrologyIMLGlaDSAnalysis.h src/c/modules/SetActiveNodesLSMx/SetActiveNodesLSMx.cpp src/c/modules/ModelProcessorx/CreateParameters.cpp src/c/shared/Enum/EnumDefinitions.h src/c/shared/Enum/Enumjl.vim src/c/solutionsequences/solutionsequences.h src/c/classes/FemModel.cpp src/c/classes/Loads/Channel.cpp src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp src/m/netcdf/read_netCDF.m src/c/classes/Node.cpp src/c/analyses/analyses.h src/c/classes/Loads/Moulin.cpp src/m/solve/listoutputs.m src/c/shared/Enum/StringToEnumx.cpp src/c/classes/Elements/Element.cpp src/c/solutionsequences/solutionsequence_imlglads_nonlinear.cpp src/c/classes/Elements/Element.h src/m/netcdf/read_netCDF.py src/m/plot/plot_BC.py src/c/shared/Enum/Enum.vim src/c/classes/Loads/Channel.h src/c/shared/Enum/issmenums.jl src/c/shared/io/Marshalling/IoCodeConversions.cpp src/c/classes/Loads/Neumannflux.cpp src/m/consistency/ismodelselfconsistent.m src/m/consistency/ismodelselfconsistent.py src/c/cores/hydrology_core.cpp src/c/shared/Enum/EnumToStringx.cpp

ajh24 at 7:20 AM 9/30/26

added matlab class for IML-GlaDS

102e943

src/m/classes/hydrologyimlglads.m

ajh24 at 7:51 AM 9/30/26

fixed errant analysis check in matlab class

f708ce7

src/m/classes/hydrologyimlglads.m

ajh24 at 7:53 AM 9/30/26

CHG: added LambdaS as a possible output for ESTAR as requested by Issue #189

a01aa44

test/Archives/Archive460.arch src/c/shared/Enum/EnumToStringx.cpp src/c/shared/Enum/Enum.vim src/c/shared/Enum/issmenums.jl src/c/shared/Enum/Enumjl.vim src/c/shared/Enum/EnumDefinitions.h test/NightlyRun/test460.py src/m/solve/listoutputs.m src/c/shared/Enum/StringToEnumx.cpp test/NightlyRun/test460.m

mathieu.morlighem at 7:55 AM 9/30/26

CHG: added tiff to the list of ignored files in example/Data

c095ccd

.gitignore

mathieu.morlighem at 7:56 AM 9/30/26

added python class for IML-GlaDS

0b3de37

src/m/classes/hydrologyimlglads.py

ajh24 at 8:02 AM 9/30/26

CHG: relaxed tolerance for LambdaS

c3a642f

test/NightlyRun/test460.py test/NightlyRun/test460.m

mathieu.morlighem at 8:21 AM 9/30/26

CHG: fixed typo for GPU_HO

5c5f94c

src/c/classes/Params/Parameters.cpp

Mathieu Morlighem at 10:30 AM 9/30/26

NEW: added water flux calculation at the grounding line

1513de0

src/c/classes/FemModel.cpp src/c/classes/Loads/Channel.h src/c/classes/Loads/Channel.cpp

Mathieu Morlighem at 10:43 AM 9/30/26

CHG: added babthymetry information to the par files

11a1387

test/Par/SquareSheetShelf.py test/Par/SquareSheetShelf.par

Mathieu Morlighem at 12:04 PM 9/30/26

NEW: new GlaDS test with grounding line transition, with test for HydrologyFlux

c776b6d

test/Archives/Archive459.arch test/NightlyRun/test459.m test/NightlyRun/test459.py

Mathieu Morlighem at 12:06 PM 9/30/26

CHG: bathymetry information is now in par file

d571283

test/NightlyRun/test408.py test/NightlyRun/test493.py test/NightlyRun/test494.m test/NightlyRun/test495.m test/NightlyRun/test495.py test/NightlyRun/test447.py test/NightlyRun/test491.py test/NightlyRun/test492.py test/NightlyRun/test443.m test/NightlyRun/test443.py test/NightlyRun/test447.m test/NightlyRun/test408.m test/NightlyRun/test493.m test/NightlyRun/test494.py test/NightlyRun/test491.m test/NightlyRun/test444.m test/NightlyRun/test444.py test/NightlyRun/test492.m

Mathieu Morlighem at 12:07 PM 9/30/26

CHG: hydrology tolerances are now available! Instead of borrowing maxiter/restol/abstol/etc from md.stressbalance you can now use md.hydrology.

af9c624

examples/shakti/runme.py test/Archives/Archive350.arch test/NightlyRun/test459.py src/c/analyses/HydrologyShaktiAnalysis.cpp src/c/shared/Enum/StringToEnumx.cpp src/m/classes/hydrologyglads.m src/c/analyses/HydrologyGlaDSAnalysis.cpp test/Archives/Archive361.arch src/c/shared/Enum/EnumToStringx.cpp src/c/solutionsequences/solutionsequence_glads_nonlinear.cpp src/c/shared/Enum/issmenums.jl test/NightlyRun/test459.m test/NightlyRun/test362.py test/NightlyRun/test359.py test/NightlyRun/test360.py test/Archives/Archive360.arch src/m/classes/hydrologyshakti.m src/m/classes/hydrologyshakti.py test/Archives/Archive359.arch examples/shakti/runme.m test/NightlyRun/test355.py src/c/solutionsequences/solutionsequence_shakti_nonlinear.cpp src/c/shared/Enum/Enumjl.vim test/NightlyRun/test355.m src/m/classes/hydrologyglads.py test/Archives/Archive459.arch test/NightlyRun/test359.m src/c/shared/Enum/Enum.vim test/Archives/Archive362.arch test/Archives/Archive550.arch test/NightlyRun/test361.m test/NightlyRun/test361.py src/c/shared/Enum/EnumDefinitions.h test/NightlyRun/test360.m test/NightlyRun/test362.m

Mathieu Morlighem at 4:58 PM 9/30/26

CHG: relaxing tolerances

a69fb85

test/NightlyRun/test362.py test/NightlyRun/test362.m

Mathieu Morlighem at 5:18 PM 9/30/26

CHG: renaming TotalHydrologyBasalFlux -> TotalHydrologyGroundinglineDischarge

50d862b

src/c/classes/Elements/Penta.h src/c/shared/Enum/EnumToStringx.cpp src/c/classes/Elements/Element.h src/c/classes/Elements/Tria.h src/c/classes/Elements/Tria.cpp src/m/solve/parseresultsfromdisk.py src/c/classes/FemModel.cpp src/m/solve/parseresultsfromdisk.m src/c/shared/Enum/Enum.vim src/c/shared/Enum/Enumjl.vim src/c/shared/Enum/EnumDefinitions.h src/c/shared/Enum/StringToEnumx.cpp src/c/shared/Enum/issmenums.jl src/c/classes/Elements/Element.cpp src/c/classes/FemModel.h src/m/solve/listoutputs.m test/NightlyRun/test459.m test/NightlyRun/test459.py src/c/classes/Regionaloutput.cpp src/c/classes/Elements/Seg.h src/c/classes/Elements/Tetra.h

Mathieu Morlighem at 5:48 PM 9/30/26

added necessary init fields

d63711d

src/m/classes/initialization.m src/m/classes/initialization.py

ajh24 at 12:15 AM 10/1/26

added hydrology tolerance params to IML-GlaDS and changed depth to height

8e9f0cb

src/m/classes/initialization.m src/c/solutionsequences/solutionsequence_imlglads_nonlinear.cpp src/m/classes/initialization.py src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp src/m/classes/hydrologyimlglads.m src/m/classes/hydrologyimlglads.py

ajh24 at 1:01 AM 10/1/26

added four argument overload to channels so initial discharge of IML-GlaDS poses no issue to GlaDS

a542dd2

src/c/classes/Loads/Channel.h src/c/classes/Loads/Channel.cpp src/c/cores/hydrology_core.cpp src/c/classes/Elements/Element.cpp

ajh24 at 1:31 AM 10/1/26

made englacial void ratio an array for GlaDS

e6de3eb

src/c/analyses/HydrologyGlaDSAnalysis.cpp src/c/shared/Enum/EnumToStringx.cpp src/m/classes/hydrologyglads.m src/c/shared/Enum/Enum.vim src/c/shared/Enum/EnumDefinitions.h src/m/classes/hydrologyglads.py src/c/shared/Enum/StringToEnumx.cpp src/c/shared/Enum/Enumjl.vim src/c/shared/Enum/issmenums.jl

ajh24 at 4:28 AM 10/1/26

fixed compilation issues and typo on solver

06235c0

src/c/Makefile.am m4/analyses.m4 src/c/cores/hydrology_core.cpp src/m/consistency/ismodelselfconsistent.m src/c/analyses/EnumToAnalysis.cpp src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp src/c/solutionsequences/solutionsequence_imlglads_nonlinear.cpp src/c/classes/FemModel.cpp src/m/solve/listoutputs.m

ajh24 at 5:28 AM 10/1/26

changed NightlyRun evr to array

2606e7c

test/NightlyRun/test355.py test/NightlyRun/test361.py test/NightlyRun/test362.py test/NightlyRun/test359.m test/NightlyRun/test359.py test/NightlyRun/test361.m test/NightlyRun/test360.py test/NightlyRun/test355.m test/NightlyRun/test360.m test/NightlyRun/test362.m test/NightlyRun/test459.m test/NightlyRun/test459.py

ajh24 at 6:20 AM 10/1/26

Adjusted tolerances

2560ab9

test/NightlyRun/test459.m test/NightlyRun/test541.m test/NightlyRun/test541.py test/NightlyRun/test120.py test/NightlyRun/test459.py

34657535+TidbitSoftware at 10:48 AM 10/1/26

stripped out duplicated GlaDS code from IML-GlaDS

7995514

src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp src/c/analyses/HydrologyIMLGlaDSAnalysis.h src/c/analyses/HydrologyGlaDSAnalysis.h src/c/analyses/HydrologyGlaDSAnalysis.cpp

ajh24 at 1:57 AM 10/2/26

BUG: fixed casting that was making CoDiPack compilation crash

c660509

src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp

mathieu.morlighem at 4:35 AM 10/2/26

BUG: fixed casting that was making CoDiPack compilation crash

e976047

src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp

mathieu.morlighem at 4:50 AM 10/2/26

CHG: cannot include mpi.h by default

fa4dc87

src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp

mathieu.morlighem at 5:29 AM 10/2/26

BUG: do not use MPI_IN_PLACE, it makes the compilation break when MPI is not supported

e834c5b

src/c/analyses/HydrologyIMLGlaDSAnalysis.cpp src/c/classes/Loads/Channel.cpp

Mathieu Morlighem at 7:53 AM 10/2/26