Changes

Summary

1. CHG: Modifying binaries packaging for macOS to allow for Intel and Silicon variants
2. BUG: fixing memory leak
3. CHG: Adjusted tolerances
4. CHG: Adjusted tolerances
5. CHG: Reverting last commit for now
6. update to PDD factor calculation
7. CHG: added accumulated SMB to pdd
8. BUG: check that observations are in chronological order
9. NEW: speedup isoline if edges are provided (and return edges optionally)
10. CHG: do not error out when calling log with 0 speed, just spit out a warning
11. CHG: minor
12. BUG: fixing library problems on totten
13. CHG: add P2 element support for FS in Tria.cpp. Use P1 projection of the velocity for interpolation when we compute db/dt and ds/dt, ignore the contribution from the edges.
14. CHG: Adjusted tolerances
15. CHG: do not include free surface solver everytime
16. CHG: adding constraints to free surfaces as a temporary hack
17. CHG: fixing issues with type casts in love_core capability.
18. CHG: Adjusted tolerances
19. CHG: adding dpsimplify.m to simplify profiles
20. CHG: Adjusted tolerances
21. BUG: Corrected patch
22. CHG: taking care of MOLHO when extracting models
23. CHG: now returns ocean_levelset and not md
24. CHG: no options to pass on to exp_ginput
25. CHG: Silence output of `which`; define AR and RANLIB
26. BUG: Name conflict (will fix later)
27. CHG: Generalized m1qn3 makefile and config to allow for shared and static builds; cleanup of Triangle makefiles/configs
28. BUG: Need to recommit with execution bit on
29. BUG: Need to recommit with execution bit on
30. CHG: Generalized m1qn3 makefile and config to allow for shared and static builds; cleanup of Triangle makefiles/configs
31. BUG: archiver flags were not being applied
32. CHG: Reverting m1qn3 patch to work on errors
33. CHG: Updated m1qn3 to overcome warnings with modern Fortran compilers
34. CHG: Adjusted tolerances
35. CHG: interpISMIP6AntarcticaOcn.m and interpISMIP6AntarcticaSMB.m: generalize to address bugs in locating the data files for certain models
36. CHG: cleaning up GEMB if statement time step calculation for thermo
37. CHG: Adjusted tolerances
38. CHG: Adjusted tolerances
39. CHG: relax tols for GEMB
40. CHG: update GEMB archives for jenkins
41. CHG: update tol for GEMB
42. CHG: GEMB carry surface melt every timestep, restrict case 4 and 5 densification schemes
43. CHG: minor comments for GEMB
44. CHG: interpISMIP6 function inputs define model with single string, simplify nc file identification
45. CHG: Adjusted tolerances
46. CHG: fixing some stuff
47. NEW: adding vz to SIA
48. CHG: Adjusted tolerances
49. CHG: Adjusted tolerances
50. CHG: Adjusted tolerances
51. CHG: Adjusted tolerances
52. CHG: Adjusted tolerances; updated test suites
53. CHG: Updated config for new MATLAB version
54. CHG: Updated MATLAB, OS, build configs
55. CHG: fixing case issues with ISMIP6 forcings
56. CHG: Updated JRE, MATLAB, OS, build configs
57. NEW: interpolation for new Stal antarctic geothermal flux
58. CHG: Adjusted tolerances
59. CHG: GlaDS- new input parameter rheology_B_base and new optional output HydrologySheetDischarge added to hydrology model
60. CHG: MATLAB > Python; clean up
61. CHG: Handle cases where PYTHONPATH already has a value; updating config for netcdf-python for machines where we do not want to install via pip
62. CHG: Adding packages to UB CCR config to help with debugging
63. CHG: Adding packaged to UB CCR config to help with debugging
64. CHG: Updating UB CCR config enable debugging
65. CHG: deal with negative log scale
66. CHG: Updating UB CCR config to compile Python wrappers for debugging submit
67. CHG: Updating UB CCR config to compile Python wrappers for debugging submit
68. CHG: Updating UB CCR config to compile Python wrappers for debugging submit
69. NEW: added ISMIP6 Antarctica forcings, still need to be fully tested
70. NEW: extended CalvingMIP to 3d Penta
71. CHG: Cleanup of chaco and semic from build configs where appropriate
72. CHG: Cleanup of chaco and semic from build configs where appropriate
73. CHG: The SMBsemic module uses the surface mass balance = SMB_ice + SMB_snow, not solely SMB_ice. Also, the term "SurfaceMassBalanceSemicEnum" is removed from Enum field.
74. Added a utility function to mask out unwatnted groups of elements and unit test
75. CHG: Added install scripts specific to Ghub Workspace 10 env; path corrections
76. CHG: Added install scripts specific to Ghub Workspace 10 env; path corrections
77. ADD: Jenkins config for Ghub Workspace 10 env
78. NEW: added petsc 3.20 install for mac
79. CHG: MATLAB -> Python; cleanup
80. CHG: Cleanup
81. CHG: MATLAB -> Python
82. CHG: Generic ar and ranlib
83. bug fix: time(1) and time(end) outside observation time works now
84. CHG: fix bug in classes/SMBsemic.py and synchronize classes/SMBsemic for python and matlab.
85. BUG: fix NaN index when using overlay
86. CHG: make the function to work for 2D grid as well