macOS - Intel - Binaries - Python 3 #159 Changes

NEW: consolidated read_netCDF/write_netCDF should now be more robust:

src/m/netcdf/read_netCDF.m src/m/netcdf/write_netCDF.py src/m/netcdf/README.txt src/m/netcdf/write_netCDF.m src/m/netcdf/read_netCDF.py

Mathieu Morlighem at 4:30 PM 5/17/26

CHG: removing extraneous printf

106b961

src/m/classes/linearbasalforcings.py

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: removing extraneous printf

36b2700

src/m/classes/m1qn3inversion.py

Mathieu Morlighem at 4:33 PM 5/17/26

CHG: streamlining generic queueing script

295dbb1

src/m/classes/clusters/generic.py src/m/classes/clusters/generic.m

Mathieu Morlighem at 4:34 PM 5/17/26

CHG: moving old code to OLD to avoid confusion

7f998c4

src/m/netcdf/restable.m src/m/netcdf/OLD/export_netCDF.py src/m/netcdf/OLD/export_netCDF.m src/m/netcdf/OLD/restable.m src/m/netcdf/export_netCDF.m src/m/netcdf/export_netCDF.py

Mathieu Morlighem at 4:44 PM 5/17/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

b636190

src/m/contrib/morlighem/massbalance/divergence.m

inwoo0415 at 7:14 AM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

a298e2c

src/m/classes/clusters/frontera.m

mansakrishna23 at 1:43 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

29a0dc0

Mathieu Morlighem at 5:15 PM 5/18/26

CHG: these classes do not have a port property, replace with 0

2e4de17

src/m/classes/clusters/ub_ccr_from_ghub.py src/m/classes/clusters/andes.m src/m/classes/clusters/cloud.m

Mathieu Morlighem at 5:20 PM 5/18/26

BUG: divergence.m - 2-D mesh does not require z-coordinate.

2b0f9e4

src/m/contrib/morlighem/massbalance/divergence.m

inwoo0415 at 6:21 PM 5/18/26

CHG: model is now marshalled in execution, need to take that into account when scp'ing

36768c3

src/m/classes/clusters/frontera.m

inwoo0415 at 6:22 PM 5/18/26

CHG: fixed UploadQueueScript now that all the files are prepared in execution

08bc558

inwoo0415 at 6:22 PM 5/18/26

CHG: plot_gridded.py - Clean up code and fix bug in getcolormap.

49f1e13

src/m/plot/plot_gridded.py

inwoo0415 at 6:30 PM 5/18/26

CHG: get status from copyfile so that MATLAB does not error out, and display a warning instead

d4e267a

src/m/os/issmscpin.m

mathieu.morlighem at 9:36 AM 5/19/26

CHG: Synchronize Matlab > Python. Display a warning message if we cannot copy the file.

07c18e1

src/m/os/issmscpin.py

inwoo0415 at 6:39 PM 5/19/26

CHG: Fix minor.

cf81581

src/m/os/issmscpin.py

inwoo0415 at 6:41 PM 5/19/26

Adjusted tolerances

50325bb

test/NightlyRun/test221.py test/NightlyRun/test221.m test/NightlyRun/test221.js

34657535+TidbitSoftware at 7:53 PM 5/19/26

CHG: Fix minor.

5a5ecb0

src/m/contrib/inwoo/ismip7/interpISMIP7AntarcticaOcn.m

inwoo0415 at 11:01 PM 5/19/26

CHG: a lot of code in clusters is repetitive, move Upload/Launch/Download in cluster_defaults to simplify the implementation of new cluster classes

4bd76a7

src/m/classes/clusters/cluster_defaults.m src/m/classes/clusters/cluster_defaults.py

mathieu.morlighem at 5:47 AM 5/20/26

CHG: streamlining all cluster classes with new defaults

8934087

mathieu.morlighem at 5:02 AM 5/21/26

NEW: adding inversionnudging for Tim's work

52a10ff

src/m/classes/inversionnudging.m

mathieu.morlighem at 9:00 AM 5/21/26

CHG: no need to get min/max parameters when creating new elements

946cced

src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp

Mathieu Morlighem at 9:19 AM 5/21/26

CHG: we do not need InputUpdateFromIoModel anymore

48c3134

src/c/classes/Elements/Tetra.cpp src/c/classes/Elements/Penta.cpp src/c/classes/Loads/Moulin.h src/c/classes/Elements/Element.h src/c/classes/Loads/Numericalflux.h src/c/classes/Loads/Neumannflux.h src/c/classes/Loads/Penpair.h src/c/classes/Elements/Seg.h src/c/classes/Elements/Tetra.h src/c/classes/Elements/Tria.cpp src/c/classes/Loads/Channel.h src/c/classes/Elements/Tria.h src/c/classes/Elements/Penta.h src/c/classes/Loads/Riftfront.h

Mathieu Morlighem at 9:27 AM 5/21/26

CHG: ptol is too high in GEMB

438bd76

test/Archives/Archive258.arch test/Archives/Archive252.arch test/Archives/Archive259.arch src/c/modules/SurfaceMassBalancex/Gembx.cpp test/Archives/Archive243.arch test/Archives/Archive253.arch

95945328+NJSchlegel at 4:32 PM 5/21/26

CHG: GEMB test removal of P tol in accumulation

f2c8bac

test/Archives/Archive244.arch src/c/modules/SurfaceMassBalancex/Gembx.cpp

95945328+NJSchlegel at 6:02 PM 5/21/26

CHG: working on nudging method

11596c9

src/c/cores/controlnudging_core.cpp src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp src/c/Makefile.am src/c/cores/WrapperCorePointerFromSolutionEnum.cpp src/c/shared/Enum/Enum.vim src/c/shared/Enum/issmenums.jl src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp src/c/shared/Enum/StringToEnumx.cpp src/c/shared/Enum/EnumToStringx.cpp src/m/classes/inversionnudging.m src/c/shared/Enum/Enumjl.vim src/c/cores/cores.h src/c/shared/Enum/EnumDefinitions.h

Mathieu Morlighem at 6:13 PM 5/21/26

CHG: streamlining cluster classes

9cdf1b7

src/m/classes/clusters/saga.py src/m/classes/clusters/fram.py src/m/classes/clusters/cluster_defaults.py src/m/classes/clusters/cyclone.py src/m/classes/clusters/gadi.py src/m/classes/clusters/yellowstone.m src/m/classes/clusters/cluster_defaults.m

mathieu.morlighem at 4:55 AM 5/22/26

CHG: port number should be an integer, not a string

710186e

src/m/classes/clusters/cyclone.py src/m/classes/clusters/gadi.py src/m/classes/clusters/ub_ccr.py

mathieu.morlighem at 4:57 AM 5/22/26

BUG: fixing CoDiPack by converting PDouble to Double

9ec8f4d

src/c/cores/controlnudging_core.cpp

Mathieu Morlighem at 5:52 AM 5/22/26

CHG: removing LaunchQueueJobIceOcean, we can call the usual LaunchQueueJob

1c5b5e7

src/m/classes/clusters/generic.m src/m/solve/solveiceocean.m src/m/classes/clusters/localpfe.m

mathieu.morlighem at 6:44 AM 5/22/26

Testing if use of new generic class will suffice for binaries

88e0b56

packagers/linux/package-issm-linux-binaries-matlab.sh

34657535+TidbitSoftware at 11:08 AM 5/22/26

Removed static version of generic class; adjusted tolerances

a5050ba

test/NightlyRun/test259.m packagers/linux/package-issm-linux-binaries-matlab.sh src/m/classes/clusters/generic_static.m test/NightlyRun/test258.m packagers/mac/package-issm-mac-binaries-matlab.sh src/m/classes/clusters/generic_static.py test/NightlyRun/test259.py test/NightlyRun/test258.py packagers/win/package-issm-win-binaries-matlab.sh

34657535+TidbitSoftware at 4:37 PM 5/22/26

Forgot to update Python binaries after removing static generic cluster class

3659fca

packagers/mac/package-issm-mac-binaries-python-3.sh packagers/linux/package-issm-linux-binaries-python-3.sh

34657535+TidbitSoftware at 4:59 PM 5/22/26

Also needed to clean up import and check on static generic class in waitonlock

91a63d5

src/m/solve/waitonlock.py src/m/solve/waitonlock.m

34657535+TidbitSoftware at 5:01 PM 5/22/26

Adjusted tolerances

9eea90f

test/NightlyRun/test252.py test/NightlyRun/test252.m

34657535+TidbitSoftware at 6:35 PM 5/22/26