Changes

Summary

1. CHG: Modified all basic external package installation scripts to use developers' download links, where possible (commit: d28a72d) (details)
2. CHG: Check if LDFLAGS is set (commit: af45c38) (details)
3. CHG: Updated all install scripts for external packages needed for extended capabilities (commit: ae2a78a) (details)
4. CHG: Uploading Chaco source to repository as it does not download properly from Sandia's GitHub repo (commit: f373b6a) (details)
5. CHG: Moved Adjoinable MPI source to repo because developer's Mercurial repo appears to be down (commit: ce399bd) (details)
6. CHG: More external package fixes (commit: 24571e7) (details)
7. CHG: Adjusted tolerances (commit: 2ce6345) (details)
8. CHG: Need to ignore download script in directory to properly download datasets (commit: 8af0e1f) (details)
9. CHG: Rolling back to HDF5 1.14.3 as newer versions do not properly compile on Intel-based Macs (known issue) (commit: fc8916a) (details)
10. BUG: Expode hidden NumPy symbols in newer versions; cleanup (commit: 630e3b9) (details)
11. CHG: Adjusted tolerances (commit: 5281e1b) (details)
12. CHG: Fix bug in src/c/analyses/SmbAnalysis.cpp (commit: 7375fb6) (details)
13. CHG: Update SmbSEMIC modules (commit: 4b2fc72) (details)
14. ADD: MATLAB - interpolate netcdf file with using xarray in python. (commit: d6ba991) (details)
15. CHG: Resolve memory leakage in SEMIC. (commit: e34d276) (details)
16. CHG: model.refine MATLAB -> Python; clean up (commit: 774c1be) (details)
17. BUG: Bad indexing of bamgmesh out (commit: 12ae127) (details)
18. CHG: Catch unsupported draw function; clean up (commit: 3b6acb6) (details)
19. CHG: Adjusted tolerances (commit: ff1c2a6) (details)
20. CHG: do not assume hemisphere (commit: fde151b) (details)
21. BUG: if minor version of python is greater than 9 the last digit was removed. Now fixed (commit: f6f4330) (details)
22. CHG: Fix SEMIC enables to run surface mass and energy balance with albedo scheme of Alex. Fix Documentation for SMBsemic with albedo scheme of Denby and ISBA. (commit: c2bca45) (details)
23. ADD: flag `with_matlab` in CI with matlab (commit: 7b93ac2) (details)
24. CHG: input.with_matlab -> input.interface (commit: 2ee7689) (details)
25. ADD: ubuntu python test (commit: 67b6355) (details)
26. ADD: install python-dev (commit: 8488adb) (details)
27. ADD: python tests (commit: 866f514) (details)
28. BUG: fix .yml (commit: 8471059) (details)
29. CHG: python path for CI (commit: d3d54ed) (details)
30. BUG: fix python path (commit: ee82d02) (details)
31. CHG: get python path from python action (commit: 340faf5) (details)
32. CHG: use env (commit: af785a1) (details)
33. Update ubuntu-python.yml (commit: 52aae87) (details)
34. CHG: output python path after setup (commit: bfa4bce) (details)
35. change to v5 python action (commit: 5055337) (details)
36. update python path (commit: 0daeefb) (details)
37. fix bug in python_version (commit: c7f4756) (details)
38. CHG: wrong place holder for string (commit: dd6fb6c) (details)
39. currentlt test with only python (commit: 54342d9) (details)
40. add libpython (commit: 13286dc) (details)
41. update CI (commit: 33d02bc) (details)
42. update CI (commit: 32c2f6f) (details)
43. set python path (commit: 2ccdd89) (details)
44. update numpy path (commit: dd0d7dd) (details)
45. check the folder (commit: 998c060) (details)
46. add path to numpy (commit: 45f8682) (details)
47. add path to numpy (commit: 22cf8ca) (details)
48. update numpy (commit: 638747a) (details)
49. add test numpy (commit: a7c37de) (details)
50. print more (commit: 3158314) (details)
51. look into _core (commit: 38dfc24) (details)
52. add python to test (commit: a69d4b1) (details)
53. add netCDF4 (commit: cbe6ea1) (details)
54. add source ISSM (commit: fc735f7) (details)
55. ADD: ubuntu python CI test (commit: 9d51a22) (details)
56. Revert "add python CI" (commit: fb582de) (details)
57. Revert "Revert "add python CI"" (commit: 0cd54f3) (details)
58. CHG: Eased tolerances (commit: 6ca74df) (details)
59. CHG: Moving certain external packages to new repo (commit: 057f7cb) (details)
60. ADD: `cutoff` option in flowlines.m (commit: e65b21e) (details)
61. BUG: revert issmscpin to previous version (commit: 994513d) (details)
62. CHG: adding dynamic function name (commit: bb87fb9) (details)
63. CHG: automatically remove checkpoint file once done to save disk space (commit: 5c73df1) (details)
64. CHG: Cleanup; MATLAB -> Python; documentation (commit: c640764) (details)
65. CHG: Merging Inwoo's fix for MATLAB + Python APIs with minor changes (commit: 7332747) (details)
66. BUG: should not capitalize Matlab and Python so that they can be picked up by modules (commit: 452bf85) (details)
67. CHG: adding path for amundsen machine (commit: a575145) (details)
68. BUG: Reapplying recent changes after merge (commit: f257f57) (details)
69. CHG: added amundsen path in velocity interpolation (commit: af05165) (details)
70. BUG: textscan can error out when the outlog is too long, limit to 1000 lines (commit: dcfc55e) (details)
71. New continuous design variable (commit: f43de6e) (details)
72. NEW: adding continuous design QMU capabilities and Mmemasstransport (commit: a545081) (details)
73. Revert "NEW: adding continuous design QMU capabilities and Mmemasstransport" (commit: d4c9717) (details)
74. NEW: adding continuous design QMU capabilities and Mmemasstransport (commit: c42a18e) (details)
75. Revert "NEW: adding continuous design QMU capabilities and Mmemasstransport" (commit: f6e9b75) (details)
76. NEW: adding continuous design QMU capabilities and Mmemasstransport (commit: 944f4db) (details)
77. CHG: fixing issues with MemOps.h (commit: e7eff65) (details)
78. CHG: missing EnumDefinitions for Mme mass transport (commit: 2334046) (details)
79. CHG: fixing issue with MmeToInputsFromaIdx prototype. (commit: 777d3f1) (details)
80. CHG: missing MMEMASSTRANSPORTCORE symbol. (commit: e6cd7a0) (details)
81. CHG: fixing issue with missing InputToP0. (commit: f2cd464) (details)
82. CHG: missing prototype for InputToP0. (commit: e82b6da) (details)
83. CHG: missing Finalize routine. Also fixing major segfault. (commit: 52fd3f4) (details)
84. CHG: fixing issue with Mmes missign the Parameters dataset. (commit: 84872f3) (details)
85. CHG: adding ismmemasstransport field to transient.m, was missing. (commit: ad8db92) (details)
86. CHG: pushing horiz inside solid Earth code. (commit: 8541268) (details)
87. CHG: missing Mme mass transport logic. (commit: dac6728) (details)
88. CHG: missing  comma. (commit: 14e6374) (details)
89. CHG: added reCast for codipack. (commit: 8aead46) (details)
90. NEW: new mmemasstransport class. (commit: e5838d7) (details)
91. CHG: mmemasstransport should not be set by default. (commit: d60d25b) (details)
92. BUG: need to cast variable to int (commit: 2340579) (details)
93. BUG: modelid should be an int (commit: 78d63f0) (details)
94. CHG: making sure modelid is an integer, so as to not recast it. (commit: 8425310) (details)
95. CHG: adding mmemasstransport class into model. (commit: 397e014) (details)
96. C (commit: 8c667f1) (details)
97. CHG: protect nond sampling variable. (commit: e4b44ba) (details)
98. CHG: Adding Mme  mass transport. (commit: a856c59) (details)
99. CHG: fixing some segfaults. (commit: 3080c0c) (details)
100. CHG: slc coupling not activated in UQ mode. (commit: 092c7d7) (details)
101. CHG: missing instantiation of mmemasstransport field in model class. (commit: e35915e) (details)
102. CHG: collapsing removed for mmemasstransport class. (commit: fc313f6) (details)
103. CHG: fixed issue with geometry kernel being recomputed several times (commit: d83f01d) (details)
104. Update sealevelchange_core.cpp (commit: d1d27cd) (details)
105. NEW: Add src/m/contrib/inwoo/loadmodel_netcdf.py - load ISSM model written in netcdfil with "export_netCDF". (commit: 8dfb0db) (details)
106. NEW: Python > Matlab - add loadmodel_netcdf.m from "loadmodel_netcdf.py". (commit: 08d733f) (details)
107. CHG: Testing if any other cases fail GitHub CI (commit: 75fec1b) (details)
108. CHG: Pinning NumPy version as temporary fix for GitHub CI issues; cleanup (commit: 32b9cd1) (details)
109. CHG: Unpinning NumPy version for GitHub CI; fix for syntax that works for latest version of NumPy (commit: a06cf7d) (details)
110. CHG: make sure to add proj lib to path if we are calling CoordTransform (commit: 8787338) (details)
111. CHG: more flexible interface to interpFromGeotiff, we can now ask for a specific interpolation method (commit: 318d5fe) (details)
112. NEW: moved to IBCSO v2 2024 (commit: 1ea0665) (details)
113. CHG: Various fixes for nightly tests (commit: 0cd1775) (details)
114. CHG: More fixes for nightlies (moving MATLAB license test to separate build) (commit: 1e5608e) (details)
115. CHG: Do not test for MATLAB license on examples builds (commit: 09d8af3) (details)
116. CHG: improved performance of SetValues (commit: 372eb34) (details)
117. CHG: Updating GCC version (commit: ed8998c) (details)
118. CHG: Added note about accessing older revisions (commit: 1d09de8) (details)
119. CHG: Adjusted tolerances (commit: 2ad6a70) (details)
120. BUG: remove weak- from the library added by MATLAB 2024b on macOS 15.02 (commit: 9ec3951) (details)
121. CHG: Applying patch that disables requirement of Python 2 (commit: ad3d8f2) (details)
122. CHG: Fix default value for decreasing downward longwave radiation with value of 29 W m-2 km-1. (commit: 21aba09) (details)
123. add amundsen path to ISMIP6 interp functions (commit: a81db6f) (details)
124. add exp file generating function (commit: e8829e7) (details)
125. CHG: Need no error flag for newer GCC (commit: 129460e) (details)
126. CHG: Updated path to libgfortran (commit: 202b134) (details)
127. NEW: Matlab > Python: initialize test/NightlyRun/test246.py. (commit: 74aa7df) (details)
128. CHG: SEMIC - Fix bugs in calculating downward longwave radiation correction according to "Marty et al. (2002)". (commit: 76c83e9) (details)
129. CHG: Update "SMBsemic" module. (commit: 5a00d90) (details)
130. CHG: Fix minor in "SmbSemicTransient". (commit: 0482dd6) (details)
131. CHG: Remove unnecessary null pointer checks (commit: cf75517) (details)
132. ADD:adding Helheim SHAKTI tutorials (commit: a17df92) (details)
133. fixed directory for ocean forcing (commit: 3408f9c) (details)
134. CHG: updated tolerance for windows (commit: 4e957f8) (details)
135. CHG: Updated install scripts and configuration for Pleiades (commit: 88046cf) (details)
136. BUG: Fix for blaslapack config options (commit: 4fc4d20) (details)
137. CHG: allow spchead to be a time dependent input (commit: 19282ff) (details)
138. CHG: loadmodel_netcdf.py - skip loading mmemasstransport in Python. "mmemasstransport" is not yet implemented in python. (commit: 01f7295) (details)
139. CHG: Upgrading Python version; cleanup (commit: 336f0ec) (details)
140. CHG: python-tk not available (commit: e7d62ee) (details)
141. CHG: Matlab > Python, Synchronize mechanicalproperties.py (commit: f6af97d) (details)
142. CHG: Pull in Python version to NumPy path (commit: 2bc91a8) (details)
143. added additional checks for homebrew installed python libraries (commit: f3640ff) (details)
144. added smb friction and hydrology checks for matlab to python netcdf (commit: f384d4a) (details)
145. added hydrology, smb, and friction routines to netCDF write/read (commit: 52139b7) (details)
146. fixed hydrology requested outputs (commit: afa1c61) (details)
147. CHG: better handling of mask interpolation (commit: 0b3cc17) (details)
148. CHG: still need to convert to 9354 (commit: 4b8bde4) (details)
149. NEW: added ability to have a spatially and temporally variable englacial storage coefficient (commit: 71c2727) (details)
150. BUG: wrong model field (commit: 7e2d77b) (details)
151. CHG: need numpy (commit: a2e5890) (details)
152. CHG: Temporarily downloading specific version of MPICH to deal with issue with latest version of MacOS SDK; cleanup (commit: a087259) (details)
153. CHG: allow user to not specify time and step (commit: c92356f) (details)
154. CHG: testing whether we actually need MatMultPatch (commit: 1081278) (details)
155. CHG: removing MatMultPatch, we can use PETSc's MatMult all the time (commit: a7e4f87) (details)
156. CHG: ignore files from externalpackages (commit: 9f89387) (details)
157. CHG: better way to Duplicate vector using PETSc's VecDuplicate (commit: c530484) (details)
158. NEW: added install-3.22-discover.sh (commit: ec6750f) (details)
159. CHG: updated compilers (commit: 4f834cd) (details)
160. CHG: Corrections for CCR cluster class; clean up (commit: 2f9adfc) (details)
161. added class for gadi cluster support (commit: ebdf473) (details)
162. minor additions to gadi cluster (commit: 0cae94c) (details)
163. DEL: gaijin cluster has been decommissioned (commit: 31d7a8d) (details)
164. CHG: Allow GEMB to pass inputs at a lower resolution and downscale using (commit: a995e2a) (details)
165. CHG: print exit code (commit: 4cabc4e) (details)
166. CHG: do not provide time and step for J and gradient, leave defaults is UNDEF so that it does not create a first step artificially (commit: 50f5e81) (details)
167. CHG: added mpi compilers by default to ISSM (commit: e7299ef) (details)
168. Update ubuntu-python.yml (commit: 1941269) (details)
169. CHG: no need to have OptionUtilities anymore, and change all sprintf to snprintf to avoid compiler warnings (commit: 854502e) (details)
170. CHG: silent deletion printf (commit: 7f93ec1) (details)
171. BUG: Update the sign of gradient mapping and constrain dlw to greater (commit: f3b0fc9) (details)
172. CHG: Removed GSL and QUESO from Dakota dependencies and configurations; removed flags classic Xcode linker; removed duplicate lib flags on Dakota libs (commit: 36172eb) (details)
173. CHG: Need GSL for CoDiPack and ADOL-C tests (commit: 3edad0a) (details)
174. CHG: Removing outdated Python install scripts; temporarily allowing debugging messages for wget in dataset download script (commit: d46ac2c) (details)
175. CHG: need to recast from double to int dof type (commit: 2415d80) (details)
176. BUG: Use temp file instead of here-string when wget'ting datasets (commit: 2022900) (details)
177. CHG: Typo (commit: a98a729) (details)
178. CHG: Trying system copy of curl (commit: 39a66b0) (details)
179. BUG: Needed to suppress self-signed certificate error (commit: ec006c4) (details)
180. Update DownloadExamplesDatasets.sh (commit: f15b500) (details)
181. BUG: Testing explicit setting of compilers (commit: 1261c1f) (details)
182. CHG: Corrected setting of compiler env vars for GitHub workflows (commit: 733eb09) (details)
183. CHG: Copying FC to F77 and F900 for GitHub workflow (commit: b5a9ba3) (details)
184. NEW: add testing for gemb downscaling functionality (commit: 379a9c7) (details)
185. CHG: steadystate should stop if step>=maxiter otherwise we do it one too many times (commit: 27a0738) (details)
186. CHG: minor update to indentation (commit: e804781) (details)
187. CHG: Use system copy of cURL on UB CCR; added rpath to Python binaries for macOS (commit: 69797ec) (details)
188. CHG: Correcting rpath issues for binaries (commit: 56433db) (details)
189. BUG: Typo (commit: 06e8410) (details)
190. CHG: update interp files for passing in other servers and building with (commit: 11927a1) (details)
191. CHG: do not recompute distance unless absolutely necessary (commit: dfb83ab) (details)
192. DEL: not needed anymore (commit: 9b22f22) (details)
193. CHG: Corrected env to pick up PROJ; added infiniband network option to UB CCR cluster; corrected rpath for macOS binaries (commit: fb42863) (details)
194. BUG: Typo (commit: 5e7a8ae) (details)
195. CHG: gdaltransform -> CoordTransform; cleanup (commit: 8eb92e8) (details)
196. CHG: not needed anymore, and not part of ISSM (commit: 8351827) (details)
197. CHG: renaming file because name is inconsistent with function name, and filename is already used by class (commit: 7154fee) (details)
198. CHG: cleaning up netCDF functions, lots of duplicates (commit: af9b08e) (details)
199. CHG: merging createMCC's (commit: 8b21cbd) (details)
200. CHG: removing old external packages (commit: 08f7d2d) (details)
201. CHG: Reapplying corrections for scp on systems that don't have bash list expansion; more error checks; clean up (commit: 2ef00a6) (details)
202. BUG: Bad indentation (commit: a9fb8f0) (details)
203. CHG: added netcdf to bin (commit: a816926) (details)
204. CHG: do not exceed final time even for fixed time steps (commit: 3bcdbfb) (details)
205. CHG: do not bother us with vz if 2d (commit: 81b03a3) (details)
206. CHG: added option for path in interpMouginot (commit: 1c57103) (details)
207. CHG: updated archive now that final time is enforced for fixed time steps (commit: a493f28) (details)
208. CHG: added more checks to GrdModel (commit: ed8c819) (details)
209. CHG: Adjusted tolerances (commit: c0e33ec) (details)
210. CHG: fixing memory leaks (commit: 2c87b6f) (details)
211. BUG: do not free world (commit: 29cf1cb) (details)
212. CHG: fixing grammar (commit: 1b0df89) (details)
213. CHG: Adjusted tolerances (commit: fd778d7) (details)
214. CHG: minor aestetics (commit: 8f5d91e) (details)
215. BUG: fixed a ton of memory leaks (commit: 49a4638) (details)
216. CHG: SMBgemb does not need geometry (commit: 042a9b1) (details)
217. BUG: forgot to change nargin (commit: 2b5a1ab) (details)
218. BUG: removed minus signs (commit: 0ebd624) (details)
219. CHG: using Isend instead of blocking Send (commit: 0213fa2) (details)
220. CHG: moving MPI_Send to Isend, non-blocking (commit: 47b0e20) (details)
221. BUG: new code could not work when port was non 0 (commit: d32c80d) (details)
222. CHG: adding InterpFromGrid as a standard mex module (commit: e8cc578) (details)
223. CHG: updated EXTRA_DIST (commit: 46ab764) (details)
224. CHG: shorter list (commit: 0b201f6) (details)
225. BUG: removed exclamation point from system command (commit: 19a30e7) (details)
226. some hdf5 files are created without proper compression (zlib) support, unsure if reproducible by others (commit: 9f0123e) (details)
227. setonix cluster support (commit: 7857937) (details)
228. CHG: added support for free surface (commit: e2ed215) (details)
229. BUG: isrotated should be initialized and copied properly (commit: 79398bd) (details)
230. CHG: no need to write restart file after we are done with optimization (commit: 7d214ad) (details)
231. CHG: not needed: (commit: e56a0c3) (details)
232. CHG: updated CPPcheck github link (commit: 18150ba) (details)
233. CHG: no need to keep adic (commit: 59848a4) (details)
234. CHG: no need to keep angel (commit: eda8e36) (details)
235. DEL: removed unused lib (commit: 9e1db19) (details)
236. CHG: estetics (commit: 9e90ad4) (details)
237. CHG: Adjusted tolerances (commit: 6094e6a) (details)
238. CHG: updated cppcheck installation script (commit: 65f56bf) (details)
239. CHG: cleanup based on cppcheck (commit: 221c56b) (details)
240. CHG: removing GaussLobato, unused (commit: 114cebc) (details)
241. CHG: tx and ty are unused (commit: b02f083) (details)
242. CHG: removing GetM, unused (commit: 47eb43c) (details)
243. CHG: removing FindParamInDataset, unused (commit: cd52e92) (details)
244. CHG: removing DeleteBarystaticContributionsParam, unused (commit: 02c6c03) (details)
245. CHG: CreateKMatrix unused (commit: 08246e8) (details)
246. CHG: do not call python's configure, let PETSc do it (commit: 0dbc26f) (details)
247. CHG: cleaning up external packages (commit: bfbd5bc) (details)
248. CHG: More cleanup of external packages (commit: db4a6ef) (details)
249. CHG: list outputs (commit: 8383a99) (details)
250. CHG: machine name for discover should not be local machine name (commit: 509f13a) (details)
251. CHG: added --with-python option to simplify python support (commit: a73e949) (details)
252. CHG: Test new Python configuration option on Jenkins (commit: 9eb1b60) (details)
253. CHG: More reliable way of getting correct include path for Python on macOS that has both Xcode and Command Line Tools installed (commit: 3ebd220) (details)
254. CHG: forgot to add -I for python.h (commit: 398204c) (details)
255. CHG: reverting back, and need double brackets for m4 (commit: 2ce3418) (details)
256. CHG: Check second path for Python.h on macOS (commit: 95fc483) (details)
257. CHG: Need another way to get libpython on macOS (commit: e72593f) (details)
258. BUG: Correction to path supplied to L linker option (commit: 38a1af0) (details)
259. ADD: added up to Outputdefinition2000Enum (commit: cc66eee) (details)
260. ADD: new modeldata interpolation script (commit: dd8e85c) (details)
261. BUG: only write part of large outlogs and errlogs (commit: a09fb85) (details)
262. CHG: added preemptable node option (commit: c235942) (details)
263. CHG: New --with-python option appears to be working on all Jenkins nodes now (commit: f7b042a) (details)
264. CHG: Updating cmake to latest version (commit: 3e9eb5a) (details)
265. CHG: Moving back to earlier version of Cmake until PETSc updates external packages; download latest version of MPICH (commit: 0fcb098) (details)
266. CHG: Wrong version of Cmake (commit: 20d538b) (details)
267. CHG: added TransientFileInput, not working yet (commit: f3b8ee7) (details)
268. CHG: added new VecToMPISerial, which may or may not be faster, to check (commit: 4db91d5) (details)
269. CHG: cleanup (commit: 18ae053) (details)
270. CHG: fixed typo (commit: 85820b3) (details)
271. CHG: missing include (commit: b3d4ac9) (details)
272. CHG: relaxed tolerances (commit: 0497b86) (details)
273. CHG: removing unused configure options (commit: 76ef111) (details)
274. CHG: updated Makefiles accordingly (whoops) (commit: 0749612) (details)
275. ADD: `small` node for frontera (commit: 60e7094) (details)
276. CHG: forgot to update javascript Makefile (commit: 08e8849) (details)
277. ADD: option to choose normal vector from velocity or front normal in calving rate calculation (commit: 8e41827) (details)
278. CHG: removed scripts that are not used (commit: 8b3c2eb) (details)
279. DEL: removed kml stuff (commit: 1446d77) (details)
280. CHG: removed KML stuff (commit: 6ef9566) (details)
281. CHG: no need to include kml anymore (commit: a4e0016) (details)
282. CHG: added warning so that people start using cuffey, which is more accurate for warmer ice (commit: 1e2f334) (details)
283. CHG: use float.h's DBL_EPSILON instead of defining new variables (commit: 7504c09) (details)
284. CHG: do not define a structure with the same name twice (commit: 578cd66) (details)
285. CHG: Pulling master branch of Gmsh development repo for now to overcome duplicate definition issue (commit: 8300a6e) (details)
286. ADD: crevasse depth law based on buttressing (commit: b91579e) (details)
287. CHG: Correcting linking (rpath) of Boost on newer macOS Command Line Tools (commit: 2a85dc9) (details)
288. BUG: some variables were not initialized (commit: 75fe22b) (details)
289. BUG:add 1e-10 to comparing thickness with crevasse to avoid machine epsilon (commit: c3679a6) (details)
290. ADD: test for crevasse depth law with buttressing (commit: a4c72c5) (details)
291. CHG: better error message to avoid people using periodic BC with non linear elements (commit: e2c5eae) (details)
292. CHG: better error message (commit: 9823f99) (details)
293. CHG: force path to CPPCHECK (commit: c496c46) (details)
294. CHG: cleaning up unused functions (commit: 78ff065) (details)
295. CHG: new path (commit: 44450ed) (details)
296. CHG: Fixes for UB CCR cluster class (finally running as expected!) (commit: 9f33b41) (details)
297. ADD:TransientGriddedFieldParam to handle transient gridded data (commit: 6032d8e) (details)
298. ADD: SMBpddGCM in m file and SMBAnalysis (commit: 6daf0d7) (details)
299. ADD: SMBpddGCM model, input tested (commit: 3ef0fc1) (details)
300. CHG: declare PROJ_LIB if not found (commit: 018e489) (details)
301. CHG: added interpBedmap3.m to interpolate Bedmap3 data (commit: 18ceba1) (details)
302. CHG: handle different types of geotiffs (commit: daf8b47) (details)
303. CHG: do not error out if data is outside requested x/y (commit: 6654976) (details)
304. CHG: cleaned up function so that it does not rely on try/catch (and sped up the code here and there) (commit: 2da6bce) (details)
305. BUG:fix the indices in TransientGriddedFieldParam (commit: 66de893) (details)
306. ADD:FindParam for TransientGriddedFieldParam to get the whole time slice (commit: fa2d942) (details)
307. CHG:lat,lon in SMGpddGMC to x_grid and y_grid (commit: 3c86ee5) (details)
308. CHG: move all the helpler functions from InterpFromGridToMeshx.cpp to shared/Numerics/Interpolation.cpp (commit: 3e4060d) (details)
309. add temperature and precepitation as input and output (commit: e7ba72c) (details)
310. BUG: No regional/ subdir (commit: 32f709c) (details)
311. NEW: added cost function to integrate L2 norm over base (commit: e8a7789) (details)
312. CHG: no more types (commit: f3aad30) (details)
313. ADD: time averaging function for TransientGriddedFieldParam::GetParameterValue (commit: 2d03a35) (details)
314. BUG:fix NULL can not be set to index (commit: 0404fc1) (details)
315. Changes for enabling AD with PETsc. (commit: 27a1e6f) (details)
316. Deactivation of new VecToMPISerial function. (commit: f369e86) (details)
317. ADD:accumulation, ablation, refreezing (commit: e5f2cdd) (details)
318. BUG:fix the units (commit: 5bd5f11) (details)
319. CHG: updated script so that we can reinstall adjointpetsc more than once (commit: d1383b4) (details)
320. CHG: need to include adjointpetsc otherwise it won't find header file (commit: 988b731) (details)
321. CHG: need to have ajointpetsclib in path otherwise mex modules are lost (commit: 5dd5fde) (details)
322. ADD:complete SBMpddGCM (commit: 27755cc) (details)
323. CHG: Adjusted tolerances (commit: 0defe62) (details)
324. BUG:fix type error when calling findindices (commit: 795bef3) (details)
325. CHG: adding gap min and max height (commit: 3b02cf8) (details)
326. CHG: adding relevant enums for gap height constraints (commit: 882d051) (details)
327. NEW: constrain gap height as a function of md.hydrology instead of heard coded parameters (commit: d1af9cd) (details)
328. BUG: make sure to fetch max height and not min height (commit: 8a04e59) (details)
329. CHG: allow negative water inputs (commit: 6893002) (details)
330. Add downscaling of humidity by keeping relative humidity constant (commit: a0d6f5b) (details)
331. Update Archive for gemb_mapping humidity downscaling (commit: 2559726) (details)
332. CHG: Adjusted tolerances (commit: fd0aa80) (details)
333. CHG: file not necessary anymore (commit: 43b47b1) (details)
334. CHG: move all SMB related from CreateParameters.cpp to SmbAnalysis.cpp (commit: 24d5484) (details)
335. CHG: add downscaling of surface pressure. (commit: 54a819d) (details)
336. NEW: Matlab > Python - add plot_gridded.py for drawing gridded figure. (commit: 53d73b2) (details)
337. NEW: Enable to plot gridded image using "plot_gridded" and fix some bugs in applyoptions for plot_gridded. (commit: a934c65) (details)
338. CHG: Testing latest version of MATLAB (commit: ca3945d) (details)
339. CHG: add GEMB mapping simpler calculation rh (commit: 55a4933) (details)
340. CHG: added Bed as a possible control (commit: 9154ed7) (details)
341. CHG: do not update inputs after controlupdateelements to avoid conflict (commit: 0162413) (details)
342. Update IceMaskGreene (commit: 14f95c2) (details)
343. CHG: this module never really worked (commit: b4e83b0) (details)
344. CHG: common-workflow.yml to use latest Matlab version, after mathwork fix bugs on their side (commit: 9a3b268) (details)
345. CHG: plot_gridded.py - Fix bugs. (commit: 816d50d) (details)
346. CHG: Fixed frictionweertman.py for compatibility with 3D model extrusion (commit: 015ef5d) (details)
347. CHG: added some documentation (commit: 2b156f6) (details)
348. CHG: wrong doc (commit: 391d4b0) (details)
349. BUG: Linking issue after latest macOS updates; updated path to libgfortran on Jenkins Intel-based Mac node (commit: 517e76b) (details)
350. CHG: Homebrew copy of gcc for older versions of gcc does not contain gfortran binary now (commit: 7b7d873) (details)
351. CHG: cosmetics (commit: 152a176) (details)
352. CHG: if outbin not found, error out instead of warning (commit: 0d7491a) (details)
353. ADD: SmbDownsampleTemperature to output the temperature are downscaling (commit: 646bdf0) (details)
354. BUG: rollback test807 (commit: 389afe1) (details)
355. CHG: Only run workflows on certain changes (commit: 85cdfc4) (details)

CHG: Modified all basic external package installation scripts to use developers' download links, where possible
 (commit: d28a72d)

CHG: Check if LDFLAGS is set
 (commit: af45c38)

CHG: Updated all install scripts for external packages needed for extended capabilities
 (commit: ae2a78a)

CHG: Uploading Chaco source to repository as it does not download properly from Sandia's GitHub repo
 (commit: f373b6a)

CHG: Moved Adjoinable MPI source to repo because developer's Mercurial repo appears to be down
 (commit: ce399bd)

CHG: More external package fixes
 (commit: 24571e7)

CHG: Adjusted tolerances
 (commit: 2ce6345)

CHG: Need to ignore download script in directory to properly download datasets
 (commit: 8af0e1f)

CHG: Rolling back to HDF5 1.14.3 as newer versions do not properly compile on Intel-based Macs (known issue)
 (commit: fc8916a)

BUG: Expode hidden NumPy symbols in newer versions; cleanup
 (commit: 630e3b9)

CHG: Adjusted tolerances
 (commit: 5281e1b)

CHG: Fix bug in src/c/analyses/SmbAnalysis.cpp

* Fix bug in L474-475 with updating SEMIC parameters in Smb analysis.
 (commit: 7375fb6)

CHG: Update SmbSEMIC modules

* Enable to return runoff (SmbRunoffEnum) and sublimation (SmbEvaporationEnum) values from SEMIC in ISSM.

modified:   src/c/classes/Elements/Element.cpp
modified:   src/c/modules/SurfaceMassBalancex/run_semic_transient.f90

* (MATLAB/Python) Update information for albedo parameterization implemented in SEMIC.

modified:   src/m/classes/SMBsemic.m
modified:   src/m/classes/SMBsemic.py
 (commit: 4b2fc72)

ADD: MATLAB - interpolate netcdf file with using xarray in python.
CHG: Python - Fix using interpXarrayGridToMesh.

	new file:   src/m/contrib/inwoo/interpXarrayGridToMesh.m
	modified:   src/m/contrib/inwoo/interpXarrayGridToMesh.py
 (commit: d6ba991)

CHG: Resolve memory leakage in SEMIC.

	modified:   src/c/classes/Elements/Element.cpp
 (commit: e34d276)

CHG: model.refine MATLAB -> Python; clean up
 (commit: 774c1be)

BUG: Bad indexing of bamgmesh out
 (commit: 12ae127)

CHG: Catch unsupported draw function; clean up
 (commit: 3b6acb6)

CHG: Adjusted tolerances
 (commit: ff1c2a6)

CHG: do not assume hemisphere
 (commit: fde151b)

BUG: if minor version of python is greater than 9 the last digit was removed. Now fixed
 (commit: f6f4330)

CHG: Fix SEMIC enables to run surface mass and energy balance with albedo scheme of Alex. Fix Documentation for SMBsemic with albedo scheme of Denby and ISBA.

	modified:   src/c/modules/SurfaceMassBalancex/run_semic_transient.f90
	modified:   src/m/classes/SMBsemic.m
	modified:   src/m/classes/SMBsemic.py
 (commit: c2bca45)

ADD: flag `with_matlab` in CI with matlab
 (commit: 7b93ac2)

CHG: input.with_matlab -> input.interface
 (commit: 2ee7689)

ADD: ubuntu python test
 (commit: 67b6355)

ADD: install python-dev
 (commit: 8488adb)

ADD: python tests
 (commit: 866f514)

BUG: fix .yml
 (commit: 8471059)

CHG: python path for CI
 (commit: d3d54ed)

BUG: fix python path
 (commit: ee82d02)

CHG: get python path from python action
 (commit: 340faf5)

CHG: use env
 (commit: af785a1)

Update ubuntu-python.yml
 (commit: 52aae87)

CHG: output python path after setup
 (commit: bfa4bce)

change to v5 python action
 (commit: 5055337)

update python path
 (commit: 0daeefb)

fix bug in python_version
 (commit: c7f4756)

CHG: wrong place holder for string
 (commit: dd6fb6c)

currentlt test with only python
 (commit: 54342d9)

add libpython
 (commit: 13286dc)

update CI
 (commit: 33d02bc)

update CI
 (commit: 32c2f6f)

set python path
 (commit: 2ccdd89)

update numpy path
 (commit: dd0d7dd)

check the folder
 (commit: 998c060)

add path to numpy
 (commit: 45f8682)

add path to numpy
 (commit: 22cf8ca)

update numpy
 (commit: 638747a)

add test numpy
 (commit: a7c37de)

print more
 (commit: 3158314)

look into _core
 (commit: 38dfc24)

add python to test
 (commit: a69d4b1)

add netCDF4
 (commit: cbe6ea1)

add source ISSM
 (commit: fc735f7)

ADD: ubuntu python CI test
 (commit: 9d51a22)

Revert "add python CI"
 (commit: fb582de)

Revert "Revert "add python CI""
 (commit: 0cd54f3)

CHG: Eased tolerances
 (commit: 6ca74df)

CHG: Moving certain external packages to new repo
 (commit: 057f7cb)

ADD: `cutoff` option in flowlines.m
 (commit: e65b21e)

BUG: revert issmscpin to previous version
 (commit: 994513d)

CHG: adding dynamic function name
 (commit: bb87fb9)

CHG: automatically remove checkpoint file once done to save disk space
 (commit: 5c73df1)

CHG: Cleanup; MATLAB -> Python; documentation
 (commit: c640764)

CHG: Merging Inwoo's fix for MATLAB + Python APIs with minor changes
 (commit: 7332747)

BUG: should not capitalize Matlab and Python so that they can be picked up by modules
 (commit: 452bf85)

CHG: adding path for amundsen machine
 (commit: a575145)

BUG: Reapplying recent changes after merge
 (commit: f257f57)

CHG: added amundsen path in velocity interpolation
 (commit: af05165)

BUG: textscan can error out when the outlog is too long, limit to 1000 lines
 (commit: dcfc55e)

New continuous design variable
 (commit: f43de6e)

NEW: adding continuous design QMU capabilities and Mmemasstransport
analysis. The Mmemasstransport analysis allows for dakota runs with mass
tranposrt thickness times series that are an ensemble -> very nice to
compute sea level change fingerprints in a MME manner.
 (commit: a545081)

Revert "NEW: adding continuous design QMU capabilities and Mmemasstransport"

This reverts commit a545081ca53b82de80d6f0a5bdf84ac2e97a535a.
 (commit: d4c9717)

NEW: adding continuous design QMU capabilities and Mmemasstransport
analysis. The Mmemasstransport analysis allows for dakota runs with mass
tranposrt thickness times series that are an ensemble -> very nice to
compute sea level change fingerprints in a MME manner.
 (commit: c42a18e)

Revert "NEW: adding continuous design QMU capabilities and Mmemasstransport"

This reverts commit c42a18ea3e65834a68fec99a478e97b5cb7d2f85.
 (commit: f6e9b75)

NEW: adding continuous design QMU capabilities and Mmemasstransport
analysis. The Mmemasstransport analysis allows for dakota runs with mass
tranposrt thickness times series that are an ensemble -> very nice to
compute sea level change fingerprints in a MME manner.
 (commit: 944f4db)

CHG: fixing issues with MemOps.h
 (commit: e7eff65)

CHG: missing EnumDefinitions for Mme mass transport
 (commit: 2334046)

CHG: fixing issue with MmeToInputsFromaIdx prototype.
 (commit: 777d3f1)

CHG: missing MMEMASSTRANSPORTCORE symbol.
 (commit: e6cd7a0)

CHG: fixing issue with missing InputToP0.
 (commit: f2cd464)

CHG: missing prototype for InputToP0.
 (commit: e82b6da)

CHG: missing Finalize routine. Also fixing major segfault.
 (commit: 52fd3f4)

CHG: fixing issue with Mmes missign the Parameters dataset.
 (commit: 84872f3)

CHG: adding ismmemasstransport field to transient.m, was missing.
 (commit: ad8db92)

CHG: pushing horiz inside solid Earth code.
 (commit: 8541268)

CHG: missing Mme mass transport logic.
 (commit: dac6728)

CHG: missing  comma.
 (commit: 14e6374)

CHG: added reCast for codipack.
 (commit: 8aead46)

NEW: new mmemasstransport class.
 (commit: e5838d7)

CHG: mmemasstransport should not be set by default.
 (commit: d60d25b)

BUG: need to cast variable to int
 (commit: 2340579)

BUG: modelid should be an int
 (commit: 78d63f0)

CHG: making sure modelid is an integer, so as to not recast it.
 (commit: 8425310)

CHG: adding mmemasstransport class into model.
 (commit: 397e014)

C
 (commit: 8c667f1)

CHG: protect nond sampling variable.
	modified:   ../../../test/NightlyRun/test109.m
 (commit: e4b44ba)

CHG: Adding Mme  mass transport.
 (commit: a856c59)

CHG: fixing some segfaults.
 (commit: 3080c0c)

CHG: slc coupling not activated in UQ mode.
Also, need to be sure to add loads if in Mme or non Mme mass transport.
 (commit: 092c7d7)

CHG: missing instantiation of mmemasstransport field in model class.
 (commit: e35915e)

CHG: collapsing removed for mmemasstransport class.
 (commit: fc313f6)

CHG: fixed issue with geometry kernel being recomputed several times
when runing dakota. Fixed this by setting geometrydone in the sealevel
initial geometry computations.
 (commit: d83f01d)

Update sealevelchange_core.cpp

BUG: fixing incorrect merge in sealevelchange_core, SealevelloadsOceanAverage and grdcore had previous fixes that were reverted by mistake
 (commit: d1d27cd)

NEW: Add src/m/contrib/inwoo/loadmodel_netcdf.py - load ISSM model written in netcdfil with "export_netCDF".
 (commit: 8dfb0db)

NEW: Python > Matlab - add loadmodel_netcdf.m from "loadmodel_netcdf.py".
 (commit: 08d733f)

CHG: Testing if any other cases fail GitHub CI
 (commit: 75fec1b)

CHG: Pinning NumPy version as temporary fix for GitHub CI issues; cleanup
 (commit: 32b9cd1)

CHG: Unpinning NumPy version for GitHub CI; fix for syntax that works for latest version of NumPy
 (commit: a06cf7d)

CHG: make sure to add proj lib to path if we are calling CoordTransform
 (commit: 8787338)

CHG: more flexible interface to interpFromGeotiff, we can now ask for a specific interpolation method
 (commit: 318d5fe)

NEW: moved to IBCSO v2 2024
 (commit: 1ea0665)

CHG: Various fixes for nightly tests
 (commit: 0cd1775)

CHG: More fixes for nightlies (moving MATLAB license test to separate build)
 (commit: 1e5608e)

CHG: Do not test for MATLAB license on examples builds
 (commit: 09d8af3)

CHG: improved performance of SetValues
 (commit: 372eb34)

CHG: Updating GCC version
 (commit: ed8998c)

CHG: Added note about accessing older revisions
 (commit: 1d09de8)

CHG: Adjusted tolerances
 (commit: 2ad6a70)

BUG: remove weak- from the library added by MATLAB 2024b on macOS 15.02
 (commit: 9ec3951)

CHG: Applying patch that disables requirement of Python 2
 (commit: ad3d8f2)

CHG: Fix default value for decreasing downward longwave radiation with value of 29 W m-2 km-1.

	modified:   src/c/classes/Elements/Element.cpp
	modified:   src/m/classes/SMBsemic.m
	modified:   src/m/classes/SMBsemic.py
 (commit: 21aba09)

add amundsen path to ISMIP6 interp functions
 (commit: a81db6f)

add exp file generating function
 (commit: e8829e7)

CHG: Need no error flag for newer GCC
 (commit: 129460e)

CHG: Updated path to libgfortran
 (commit: 202b134)

NEW: Matlab > Python: initialize test/NightlyRun/test246.py.

	new file:   test/NightlyRun/test246.py
 (commit: 74aa7df)

CHG: SEMIC - Fix bugs in calculating downward longwave radiation correction according to "Marty et al. (2002)".
 (commit: 76c83e9)

CHG: Update "SMBsemic" module.

* Fix unit in "md.smb.desfac" (desertification factor): 1/km -> 1/m.

* Add options to enable or disable parameterizations for "precipitation desertification" (Vizcaino et al., 2010) and "longwave correction" (Marty et al., 2002) using "md.smb.isdesertification" and "md.smb.isLWDcorret".
	* Add "SmbSemicIsDesertificationEnum" and "SmbSemicIsLWDcorrectEnum".

* Synchronize MATLAB and Python of "src/m/classes/SMBsemic.py" and "src/m/classes/SMBsemic.m".

	modified:   src/c/analyses/SmbAnalysis.cpp
	modified:   src/c/classes/Elements/Element.cpp
	modified:   src/c/shared/Enum/Enum.vim
	modified:   src/c/shared/Enum/EnumDefinitions.h
	modified:   src/c/shared/Enum/EnumToStringx.cpp
	modified:   src/c/shared/Enum/Enumjl.vim
	modified:   src/c/shared/Enum/StringToEnumx.cpp
	modified:   src/c/shared/Enum/issmenums.jl
	modified:   src/m/classes/SMBsemic.m
	modified:   src/m/classes/SMBsemic.py
 (commit: 5a00d90)

CHG: Fix minor in "SmbSemicTransient".
 (commit: 0482dd6)

CHG: Remove unnecessary null pointer checks
 (commit: cf75517)

ADD:adding Helheim SHAKTI tutorials
 (commit: a17df92)

fixed directory for ocean forcing
 (commit: 3408f9c)

CHG: updated tolerance for windows
 (commit: 4e957f8)

CHG: Updated install scripts and configuration for Pleiades
 (commit: 88046cf)