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A         src\c\modules\CoordinateSystemTransformx\CoordinateSystemTransformx.h
A         src\c\modules\FloatingiceMeltingRatePicox
A         src\c\modules\FloatingiceMeltingRatePicox\FloatingiceMeltingRatePicox.cpp
A         src\c\modules\FloatingiceMeltingRatePicox\FloatingiceMeltingRatePicox.h
A         src\c\modules\Chacox
A         src\c\modules\Chacox\chaco_seconds.cpp
A         src\c\modules\Chacox\user_params.cpp
A         src\c\modules\Chacox\Chacox.cpp
A         src\c\modules\Chacox\input_parse.cpp
A         src\c\modules\Chacox\Chacox.h
A         src\c\modules\RheologyBbarAbsGradientx
A         src\c\modules\RheologyBbarAbsGradientx\RheologyBbarAbsGradientx.cpp
A         src\c\modules\RheologyBbarAbsGradientx\RheologyBbarAbsGradientx.h
A         src\c\modules\NodeConnectivityx
A         src\c\modules\NodeConnectivityx\NodeConnectivityx.cpp
A         src\c\modules\NodeConnectivityx\NodeConnectivityx.h
A         src\c\modules\Trianglex
A         src\c\modules\Trianglex\Trianglex.cpp
A         src\c\modules\Trianglex\Trianglex.h
A         src\c\modules\ContourToMeshx
A         src\c\modules\ContourToMeshx\ContourToMeshxt.cpp
A         src\c\modules\ContourToMeshx\ContourToMeshx.cpp
A         src\c\modules\ContourToMeshx\ContourToMeshx.h
A         src\c\modules\ContourToNodesx
A         src\c\modules\ContourToNodesx\ContourToNodesx.cpp
A         src\c\modules\ContourToNodesx\ContourToNodesx.h
A         src\c\modules\CreateJacobianMatrixx
A         src\c\modules\CreateJacobianMatrixx\CreateJacobianMatrixx.cpp
A         src\c\modules\CreateJacobianMatrixx\CreateJacobianMatrixx.h
A         src\c\modules\CreateNodalConstraintsx
A         src\c\modules\CreateNodalConstraintsx\CreateNodalConstraintsx.cpp
A         src\c\modules\CreateNodalConstraintsx\CreateNodalConstraintsx.h
A         src\c\modules\ExpToLevelSetx
A         src\c\modules\ExpToLevelSetx\ExpToLevelSetxt.cpp
A         src\c\modules\ExpToLevelSetx\ExpToLevelSetx.cpp
A         src\c\modules\ExpToLevelSetx\ExpToLevelSetx.h
A         src\c\modules\Mergesolutionfromftogx
A         src\c\modules\Mergesolutionfromftogx\Mergesolutionfromftogx.cpp
A         src\c\modules\Mergesolutionfromftogx\Mergesolutionfromftogx.h
A         src\c\modules\OutputDefinitionsResponsex
A         src\c\modules\OutputDefinitionsResponsex\OutputDefinitionsResponsex.cpp
A         src\c\modules\OutputDefinitionsResponsex\OutputDefinitionsResponsex.h
A         src\c\modules\ResetConstraintsx
A         src\c\modules\ResetConstraintsx\ResetConstraintsx.cpp
A         src\c\modules\ResetConstraintsx\ResetConstraintsx.h
A         src\c\modules\SpcNodesx
A         src\c\modules\SpcNodesx\SpcNodesx.cpp
A         src\c\modules\SpcNodesx\SpcNodesx.h
A         src\c\modules\GetSolutionFromInputsx
A         src\c\modules\GetSolutionFromInputsx\GetSolutionFromInputsx.cpp
A         src\c\modules\GetSolutionFromInputsx\GetSolutionFromInputsx.h
A         src\c\modules\GeothermalFluxx
A         src\c\modules\GeothermalFluxx\GeothermalFluxx.cpp
A         src\c\modules\GeothermalFluxx\GeothermalFluxx.h
A         src\c\modules\InputDepthAverageAtBasex
A         src\c\modules\InputDepthAverageAtBasex\InputDepthAverageAtBasex.cpp
A         src\c\modules\InputDepthAverageAtBasex\InputDepthAverageAtBasex.h
A         src\c\modules\InputExtrudex
A         src\c\modules\InputExtrudex\InputExtrudex.cpp
A         src\c\modules\InputExtrudex\InputExtrudex.h
A         src\c\modules\InputUpdateFromMatrixDakotax
A         src\c\modules\InputUpdateFromMatrixDakotax\InputUpdateFromMatrixDakotax.cpp
A         src\c\modules\InputUpdateFromMatrixDakotax\InputUpdateFromMatrixDakotax.h
A         src\c\modules\InputUpdateFromSolutionx
A         src\c\modules\InputUpdateFromSolutionx\InputUpdateFromSolutionx.cpp
A         src\c\modules\InputUpdateFromSolutionx\InputUpdateFromSolutionx.h
A         src\c\modules\InputUpdateFromVectorx
A         src\c\modules\InputUpdateFromVectorx\InputUpdateFromVectorx.cpp
A         src\c\modules\InputUpdateFromVectorx\InputUpdateFromVectorx.h
A         src\c\modules\NodalValuex
A         src\c\modules\NodalValuex\NodalValuex.cpp
A         src\c\modules\NodalValuex\NodalValuex.h
A         src\c\modules\ResetFSBasalBoundaryConditionx
A         src\c\modules\ResetFSBasalBoundaryConditionx\ResetFSBasalBoundaryConditionx.cpp
A         src\c\modules\ResetFSBasalBoundaryConditionx\ResetFSBasalBoundaryConditionx.h
A         src\c\modules\RheologyBAbsGradientx
A         src\c\modules\RheologyBAbsGradientx\RheologyBAbsGradientx.cpp
A         src\c\modules\RheologyBAbsGradientx\RheologyBAbsGradientx.h
A         src\c\modules\SurfaceAreax
A         src\c\modules\SurfaceAreax\SurfaceAreax.cpp
A         src\c\modules\SurfaceAreax\SurfaceAreax.h
A         src\c\modules\SystemMatricesx
A         src\c\modules\SystemMatricesx\SystemMatricesx.cpp
A         src\c\modules\SystemMatricesx\SystemMatricesx.h
A         src\c\modules\ThicknessAbsMisfitx
A         src\c\modules\ThicknessAbsMisfitx\ThicknessAbsMisfitx.cpp
A         src\c\modules\ThicknessAbsMisfitx\ThicknessAbsMisfitx.h
A         src\c\modules\ThicknessAcrossGradientx
AU        src\c\modules\ThicknessAcrossGradientx\ThicknessAcrossGradientx.cpp
A         src\c\modules\ThicknessAcrossGradientx\ThicknessAcrossGradientx.h
A         src\c\modules\ThicknessAlongGradientx
AU        src\c\modules\ThicknessAlongGradientx\ThicknessAlongGradientx.cpp
A         src\c\modules\ThicknessAlongGradientx\ThicknessAlongGradientx.h
A         src\c\modules\InputDuplicatex
A         src\c\modules\InputDuplicatex\InputDuplicatex.cpp
A         src\c\modules\InputDuplicatex\InputDuplicatex.h
A         src\c\modules\Scotchx
A         src\c\modules\Scotchx\Scotchx.h
A         src\c\modules\Scotchx\Scotchx.cpp
A         src\c\modules\Damagex
A         src\c\modules\Damagex\Damagex.cpp
A         src\c\modules\Damagex\Damagex.h
A         src\c\modules\ParseToolkitsOptionsx
A         src\c\modules\ParseToolkitsOptionsx\ParseToolkitsOptionsx.cpp
A         src\c\modules\ParseToolkitsOptionsx\ParseToolkitsOptionsx.h
A         src\c\modules\NodesDofx
A         src\c\modules\NodesDofx\NodesDofx.cpp
A         src\c\modules\NodesDofx\NodesDofx.h
A         src\c\modules\VerticesDofx
A         src\c\modules\InterpFromGridToMeshx
A         src\c\modules\InterpFromGridToMeshx\InterpFromGridToMeshx.cpp
A         src\c\modules\InterpFromGridToMeshx\InterpFromGridToMeshx.h
A         src\c\modules\DistanceToMaskBoundaryx
A         src\c\modules\DistanceToMaskBoundaryx\DistanceToMaskBoundaryxt.cpp
A         src\c\modules\DistanceToMaskBoundaryx\DistanceToMaskBoundaryx.cpp
A         src\c\modules\DistanceToMaskBoundaryx\DistanceToMaskBoundaryx.h
A         src\c\modules\InterpFromMeshToGridx
A         src\c\modules\InterpFromMeshToGridx\InterpFromMeshToGridx.cpp
A         src\c\modules\InterpFromMeshToGridx\InterpFromMeshToGridx.h
A         src\c\modules\ProcessRiftsx
A         src\c\modules\ProcessRiftsx\ProcessRiftsx.cpp
A         src\c\modules\ProcessRiftsx\ProcessRiftsx.h
A         src\c\modules\Krigingx
A         src\c\modules\Krigingx\Krigingx.cpp
A         src\c\modules\Krigingx\pKrigingx.cpp
A         src\c\modules\Krigingx\Krigingx.h
A         src\c\modules\BamgConvertMeshx
A         src\c\modules\BamgConvertMeshx\BamgConvertMeshx.cpp
A         src\c\modules\BamgConvertMeshx\BamgConvertMeshx.h
A         src\c\modules\BamgTriangulatex
A         src\c\modules\BamgTriangulatex\BamgTriangulatex.cpp
A         src\c\modules\BamgTriangulatex\BamgTriangulatex.h
A         src\c\modules\KMLFileReadx
A         src\c\modules\KMLFileReadx\KMLFileReadx.cpp
A         src\c\modules\KMLFileReadx\KMLFileReadx.h
A         src\c\modules\KMLMeshWritex
A         src\c\modules\KMLMeshWritex\KMLMeshWritex.cpp
A         src\c\modules\KMLMeshWritex\KMLMeshWritex.h
A         src\c\modules\Exp2Kmlx
A         src\c\modules\Exp2Kmlx\Exp2Kmlx.cpp
A         src\c\modules\Exp2Kmlx\Exp2Kmlx.h
A         src\c\modules\Shp2Kmlx
A         src\c\modules\Shp2Kmlx\Shp2Kmlx.cpp
A         src\c\modules\Shp2Kmlx\Shp2Kmlx.h
A         src\c\modules\Kml2Expx
A         src\c\modules\Kml2Expx\Kml2Expx.cpp
A         src\c\modules\Kml2Expx\Kml2Expx.h
A         src\c\modules\PropagateFlagsFromConnectivityx
A         src\c\modules\PropagateFlagsFromConnectivityx\PropagateFlagsFromConnectivityx.h
A         src\c\modules\PropagateFlagsFromConnectivityx\PropagateFlagsFromConnectivityx.cpp
A         src\c\modules\KMLOverlayx
A         src\c\modules\KMLOverlayx\KMLOverlayx.cpp
A         src\c\modules\KMLOverlayx\KMLOverlayx.h
A         src\c\modules\ElementConnectivityx
A         src\c\modules\ElementConnectivityx\ElementConnectivityx.cpp
A         src\c\modules\ElementConnectivityx\ElementConnectivityx.h
A         src\c\modules\InterpFromMeshToMesh3dx
A         src\c\modules\InterpFromMeshToMesh3dx\InterpFromMeshToMesh3dx.cpp
A         src\c\modules\InterpFromMeshToMesh3dx\InterpFromMeshToMesh3dx.h
A         src\c\classes
A         src\c\classes\Elements
A         src\c\classes\Elements\Penta.cpp
A         src\c\classes\Elements\Penta.h
A         src\c\classes\Elements\Element.cpp
A         src\c\classes\Elements\Element.h
A         src\c\classes\Elements\Tria.cpp
A         src\c\classes\Elements\Seg.h
A         src\c\classes\Elements\Tetra.h
A         src\c\classes\Elements\Tria.h
A         src\c\classes\Elements\PentaRef.cpp
A         src\c\classes\Elements\ElementHook.cpp
A         src\c\classes\Elements\Tetra.cpp
A         src\c\classes\Elements\TriaRef.cpp
A         src\c\classes\Elements\ElementHook.h
A         src\c\classes\Elements\Seg.cpp
A         src\c\classes\Elements\Elements.cpp
A         src\c\classes\Elements\PentaRef.h
A         src\c\classes\Elements\SegRef.h
A         src\c\classes\Elements\TetraRef.h
A         src\c\classes\Elements\TriaRef.h
A         src\c\classes\Elements\Elements.h
A         src\c\classes\Elements\SegRef.cpp
A         src\c\classes\Elements\TetraRef.cpp
A         src\c\classes\FemModel.cpp
A         src\c\classes\Loads
A         src\c\classes\Loads\Channel.cpp
A         src\c\classes\Loads\Friction.cpp
A         src\c\classes\Loads\Friction.h
A         src\c\classes\Loads\Neumannflux.cpp
A         src\c\classes\Loads\Moulin.cpp
A         src\c\classes\Loads\Penpair.cpp
A         src\c\classes\Loads\Numericalflux.cpp
A         src\c\classes\Loads\Pengrid.cpp
A         src\c\classes\Loads\Riftfront.cpp
A         src\c\classes\Loads\Channel.h
A         src\c\classes\Loads\Loads.cpp
A         src\c\classes\Loads\Loads.h
A         src\c\classes\Loads\Moulin.h
A         src\c\classes\Loads\Neumannflux.h
A         src\c\classes\Loads\Numericalflux.h
A         src\c\classes\Loads\Pengrid.h
A         src\c\classes\Loads\Penpair.h
A         src\c\classes\Loads\Riftfront.h
A         src\c\classes\Loads\Load.h
A         src\c\classes\Cfrheologybbarabsgrad.cpp
A         src\c\classes\Cfrheologybbarabsgrad.h
A         src\c\classes\Cfrheologybbarabsgradtransient.cpp
A         src\c\classes\Cfrheologybbarabsgradtransient.h
A         src\c\classes\classes.h
A         src\c\classes\Cfdragcoeffabsgradtransient.cpp
A         src\c\classes\Cfdragcoeffabsgradtransient.h
A         src\c\classes\Cfdragcoeffabsgrad.cpp
A         src\c\classes\Cfdragcoeffabsgrad.h
A         src\c\classes\FemModel.h
A         src\c\classes\Regionaloutput.cpp
A         src\c\classes\Inputs
A         src\c\classes\Inputs\TransientInput.cpp
A         src\c\classes\Inputs\ControlInput.cpp
A         src\c\classes\Inputs\ControlInput.h
A         src\c\classes\Inputs\TriaInput.cpp
A         src\c\classes\Inputs\Input.h
A         src\c\classes\Inputs\Inputs.cpp
A         src\c\classes\Inputs\Inputs.h
A         src\c\classes\Inputs\TriaInput.h
A         src\c\classes\Inputs\ArrayInput.cpp
A         src\c\classes\Inputs\IntArrayInput.cpp
A         src\c\classes\Inputs\IntArrayInput.h
A         src\c\classes\Inputs\DatasetInput.h
A         src\c\classes\Inputs\PentaInput.cpp
A         src\c\classes\Inputs\TransientInput.h
A         src\c\classes\Inputs\DatasetInput.cpp
A         src\c\classes\Inputs\ArrayInput.h
A         src\c\classes\Inputs\BoolInput.cpp
A         src\c\classes\Inputs\BoolInput.h
A         src\c\classes\Inputs\DoubleInput.cpp
A         src\c\classes\Inputs\DoubleInput.h
A         src\c\classes\Inputs\ElementInput.h
A         src\c\classes\Inputs\IntInput.cpp
A         src\c\classes\Inputs\IntInput.h
A         src\c\classes\Inputs\PentaInput.h
A         src\c\classes\Inputs\SegInput.cpp
A         src\c\classes\Inputs\SegInput.h
A         src\c\classes\Inputs\ElementInput.cpp
A         src\c\classes\Vertices.cpp
A         src\c\classes\Vertices.h
A         src\c\classes\Params
A         src\c\classes\Params\BoolParam.h
A         src\c\classes\Params\ControlParam.cpp
A         src\c\classes\Params\ControlParam.h
A         src\c\classes\Params\DataSetParam.h
A         src\c\classes\Params\DoubleMatArrayParam.h
A         src\c\classes\Params\DoubleMatParam.h
A         src\c\classes\Params\DoubleParam.h
A         src\c\classes\Params\DoubleVecParam.h
A         src\c\classes\Params\FileParam.h
A         src\c\classes\Params\GenericParam.h
A         src\c\classes\Params\IntMatParam.h
A         src\c\classes\Params\IntParam.h
A         src\c\classes\Params\IntVecParam.h
A         src\c\classes\Params\MatrixParam.h
A         src\c\classes\Params\Param.h
A         src\c\classes\Params\Parameters.cpp
A         src\c\classes\Params\Parameters.h
A         src\c\classes\Params\StringArrayParam.h
A         src\c\classes\Params\StringParam.h
AU        src\c\classes\Params\TransientArrayParam.h
AU        src\c\classes\Params\TransientParam.h
A         src\c\classes\Params\VectorParam.h
AU        src\c\classes\Params\TransientArrayParam.cpp
AU        src\c\classes\Params\TransientParam.cpp
A         src\c\classes\Params\DoubleVecParam.cpp
A         src\c\classes\Params\StringArrayParam.cpp
A         src\c\classes\Params\StringParam.cpp
A         src\c\classes\Params\BoolParam.cpp
A         src\c\classes\Params\DataSetParam.cpp
A         src\c\classes\Params\DoubleMatArrayParam.cpp
A         src\c\classes\Params\DoubleMatParam.cpp
A         src\c\classes\Params\DoubleParam.cpp
A         src\c\classes\Params\FileParam.cpp
A         src\c\classes\Params\IntMatParam.cpp
A         src\c\classes\Params\IntParam.cpp
A         src\c\classes\Params\IntVecParam.cpp
A         src\c\classes\Params\VectorParam.cpp
A         src\c\classes\Params\MatrixParam.cpp
A         src\c\classes\Params\DoubleTransientMatParam.cpp
A         src\c\classes\Params\DoubleTransientMatParam.h
A         src\c\classes\Cflevelsetmisfit.cpp
A         src\c\classes\Cflevelsetmisfit.h
A         src\c\classes\Cfsurfacelogvel.cpp
A         src\c\classes\Cfsurfacelogvel.h
A         src\c\classes\Cfsurfacesquare.cpp
A         src\c\classes\Cfsurfacesquare.h
A         src\c\classes\Cfsurfacesquaretransient.cpp
A         src\c\classes\DependentObject.cpp
A         src\c\classes\DependentObject.h
A         src\c\classes\Cfsurfacesquaretransient.h
A         src\c\classes\IoModel.cpp
A         src\c\classes\IoModel.h
A         src\c\classes\Nodalvalue.cpp
A         src\c\classes\Nodalvalue.h
A         src\c\classes\Node.cpp
A         src\c\classes\Materials
AU        src\c\classes\Materials\Matlitho.cpp
AU        src\c\classes\Materials\Matlitho.h
A         src\c\classes\Materials\Material.h
A         src\c\classes\Materials\Matestar.cpp
A         src\c\classes\Materials\Matestar.h
A         src\c\classes\Materials\Matice.cpp
A         src\c\classes\Materials\Matice.h
A         src\c\classes\Materials\Materials.cpp
A         src\c\classes\Materials\Materials.h
A         src\c\classes\Nodes.cpp
A         src\c\classes\GrdLoads.cpp
A         src\c\classes\GrdLoads.h
A         src\c\classes\Profiler.h
A         src\c\classes\SealevelGeometry.cpp
A         src\c\classes\SealevelGeometry.h
A         src\c\classes\Dakota
A         src\c\classes\Dakota\IssmDirectApplicInterface.h
A         src\c\classes\Dakota\IssmParallelDirectApplicInterface.cpp
A         src\c\classes\Dakota\IssmParallelDirectApplicInterface.h
A         src\c\classes\Misfit.cpp
A         src\c\classes\gauss
A         src\c\classes\gauss\GaussSeg.cpp
A         src\c\classes\gauss\GaussTria.cpp
A         src\c\classes\gauss\GaussPenta.cpp
A         src\c\classes\gauss\Gauss.h
A         src\c\classes\gauss\GaussPenta.h
A         src\c\classes\gauss\GaussSeg.h
A         src\c\classes\gauss\GaussTetra.cpp
A         src\c\classes\gauss\GaussTetra.h
A         src\c\classes\gauss\GaussTria.h
A         src\c\classes\gauss\gaussobjects.h
A         src\c\classes\matrix
A         src\c\classes\matrix\ElementMatrix.cpp
A         src\c\classes\matrix\ElementMatrix.h
A         src\c\classes\matrix\ElementVector.cpp
A         src\c\classes\matrix\ElementVector.h
A         src\c\classes\matrix\matrixobjects.h
A         src\c\classes\ExternalResults
AU        src\c\classes\ExternalResults\GenericExternalResult.h
A         src\c\classes\ExternalResults\Results.cpp
A         src\c\classes\ExternalResults\ExternalResult.h
A         src\c\classes\ExternalResults\Results.h
A         src\c\classes\Radar.h
A         src\c\classes\AmrBamg.h
A         src\c\classes\BarystaticContributions.h
A         src\c\classes\Masscon.h
A         src\c\classes\Massconaxpby.h
A         src\c\classes\Massfluxatgate.h
A         src\c\classes\Misfit.h
A         src\c\classes\Numberedcostfunction.h
A         src\c\classes\Options
A         src\c\classes\Options\Option.h
A         src\c\classes\Options\GenericOption.h
A         src\c\classes\Options\OptionUtilities.cpp
A         src\c\classes\Options\OptionUtilities.h
A         src\c\classes\Options\Options.h
A         src\c\classes\Options\Options.cpp
A         src\c\classes\kriging
A         src\c\classes\kriging\Covertree.h
A         src\c\classes\kriging\ExponentialVariogram.h
A         src\c\classes\kriging\PowerVariogram.h
A         src\c\classes\kriging\Quadtree.h
A         src\c\classes\kriging\SphericalVariogram.h
A         src\c\classes\kriging\Observations.cpp
A         src\c\classes\kriging\GaussianVariogram.h
A         src\c\classes\kriging\Observation.h
A         src\c\classes\kriging\Observations.h
A         src\c\classes\kriging\GaussianVariogram.cpp
A         src\c\classes\kriging\SphericalVariogram.cpp
A         src\c\classes\kriging\Observation.cpp
A         src\c\classes\kriging\Variogram.h
A         src\c\classes\kriging\Covertree.cpp
A         src\c\classes\kriging\ExponentialVariogram.cpp
A         src\c\classes\kriging\PowerVariogram.cpp
A         src\c\classes\kriging\Quadtree.cpp
A         src\c\classes\kriging\krigingobjects.h
A         src\c\classes\AmrBamg.cpp
A         src\c\classes\AmrNeopz.cpp
A         src\c\classes\BarystaticContributions.cpp
A         src\c\classes\Constraints
A         src\c\classes\Constraints\SpcDynamic.cpp
A         src\c\classes\Constraints\SpcDynamic.h
A         src\c\classes\Constraints\Constraints.cpp
A         src\c\classes\Constraints\SpcStatic.cpp
A         src\c\classes\Constraints\SpcStatic.h
A         src\c\classes\Constraints\SpcTransient.cpp
A         src\c\classes\Constraints\SpcTransient.h
A         src\c\classes\Constraints\Constraint.h
A         src\c\classes\Constraints\Constraints.h
A         src\c\classes\Node.h
A         src\c\classes\Vertex.cpp
A         src\c\classes\Vertex.h
A         src\c\classes\Contours.cpp
A         src\c\classes\Radar.cpp
A         src\c\classes\Contour.h
A         src\c\classes\Hook.cpp
A         src\c\classes\Hook.h
A         src\c\classes\Nodes.h
A         src\c\classes\Numberedcostfunction.cpp
A         src\c\classes\Profiler.cpp
A         src\c\classes\Regionaloutput.h
A         src\c\classes\Segment.h
A         src\c\classes\AmrNeopz.h
A         src\c\classes\Contours.h
A         src\c\classes\GiaDeflectionCoreArgs.h
A         src\c\classes\RiftStruct.h
A         src\c\classes\Definition.h
A         src\c\classes\RiftStruct.cpp
A         src\c\analyses
A         src\c\analyses\HydrologyGlaDSAnalysis.cpp
A         src\c\analyses\MasstransportAnalysis.cpp
A         src\c\analyses\SmbAnalysis.cpp
A         src\c\analyses\DebrisAnalysis.cpp
A         src\c\analyses\HydrologyShreveAnalysis.cpp
A         src\c\analyses\LevelsetAnalysis.cpp
A         src\c\analyses\SealevelchangeAnalysis.cpp
A         src\c\analyses\AdjointHorizAnalysis.cpp
A         src\c\analyses\HydrologyShaktiAnalysis.cpp
A         src\c\analyses\AgeAnalysis.cpp
A         src\c\analyses\AgeAnalysis.h
A         src\c\analyses\HydrologyDCEfficientAnalysis.cpp
A         src\c\analyses\HydrologyDCInefficientAnalysis.cpp
AU        src\c\analyses\HydrologyArmapwAnalysis.cpp
A         src\c\analyses\EnthalpyAnalysis.cpp
A         src\c\analyses\StressbalanceAnalysis.cpp
A         src\c\analyses\StressbalanceSIAAnalysis.cpp
A         src\c\analyses\ThermalAnalysis.cpp
AU        src\c\analyses\HydrologyArmapwAnalysis.h
A         src\c\analyses\EnumToAnalysis.cpp
A         src\c\analyses\analyses.h
A         src\c\analyses\HydrologyTwsAnalysis.cpp
AU        src\c\analyses\LoveAnalysis.cpp
A         src\c\analyses\DebrisAnalysis.h
A         src\c\analyses\FreeSurfaceBaseAnalysis.cpp
A         src\c\analyses\StressbalanceVerticalAnalysis.cpp
A         src\c\analyses\DamageEvolutionAnalysis.cpp
A         src\c\analyses\EsaAnalysis.cpp
A         src\c\analyses\FreeSurfaceTopAnalysis.cpp
A         src\c\analyses\OceantransportAnalysis.cpp
A         src\c\analyses\SamplingAnalysis.cpp
A         src\c\analyses\UzawaPressureAnalysis.cpp
A         src\c\analyses\SealevelchangeAnalysis.h
A         src\c\analyses\AdjointHorizAnalysis.h
A         src\c\analyses\StressbalanceAnalysis.h
A         src\c\analyses\LevelsetAnalysis.h
A         src\c\analyses\BalancethicknessAnalysis.cpp
A         src\c\analyses\SamplingAnalysis.h
A         src\c\analyses\HydrologyShaktiAnalysis.h
A         src\c\analyses\L2ProjectionBaseAnalysis.cpp
A         src\c\analyses\ExtrapolationAnalysis.h
A         src\c\analyses\GLheightadvectionAnalysis.cpp
A         src\c\analyses\HydrologyPismAnalysis.cpp
A         src\c\analyses\DamageEvolutionAnalysis.h
A         src\c\analyses\AdjointBalancethicknessAnalysis.cpp
A         src\c\analyses\BalancevelocityAnalysis.cpp
A         src\c\analyses\L2ProjectionEPLAnalysis.cpp
A         src\c\analyses\MeltingAnalysis.cpp
A         src\c\analyses\AdjointBalancethickness2Analysis.cpp
A         src\c\analyses\AdjointBalancethickness2Analysis.h
A         src\c\analyses\AdjointBalancethicknessAnalysis.h
A         src\c\analyses\Analysis.h
A         src\c\analyses\Balancethickness2Analysis.cpp
A         src\c\analyses\Balancethickness2Analysis.h
A         src\c\analyses\BalancethicknessAnalysis.h
A         src\c\analyses\BalancethicknessSoftAnalysis.cpp
A         src\c\analyses\BalancethicknessSoftAnalysis.h
A         src\c\analyses\BalancevelocityAnalysis.h
A         src\c\analyses\DepthAverageAnalysis.cpp
A         src\c\analyses\DepthAverageAnalysis.h
A         src\c\analyses\EnthalpyAnalysis.h
A         src\c\analyses\EnumToAnalysis.h
A         src\c\analyses\EsaAnalysis.h
A         src\c\analyses\ExtrapolationAnalysis.cpp
A         src\c\analyses\ExtrudeFromBaseAnalysis.cpp
A         src\c\analyses\ExtrudeFromBaseAnalysis.h
A         src\c\analyses\ExtrudeFromTopAnalysis.cpp
A         src\c\analyses\ExtrudeFromTopAnalysis.h
A         src\c\analyses\FreeSurfaceBaseAnalysis.h
A         src\c\analyses\FreeSurfaceTopAnalysis.h
A         src\c\analyses\GLheightadvectionAnalysis.h
A         src\c\analyses\HydrologyDCEfficientAnalysis.h
A         src\c\analyses\HydrologyDCInefficientAnalysis.h
A         src\c\analyses\HydrologyGlaDSAnalysis.h
A         src\c\analyses\HydrologyPismAnalysis.h
A         src\c\analyses\HydrologyShreveAnalysis.h
A         src\c\analyses\HydrologyTwsAnalysis.h
A         src\c\analyses\L2ProjectionBaseAnalysis.h
A         src\c\analyses\L2ProjectionEPLAnalysis.h
AU        src\c\analyses\LoveAnalysis.h
A         src\c\analyses\MasstransportAnalysis.h
A         src\c\analyses\MeltingAnalysis.h
A         src\c\analyses\OceantransportAnalysis.h
A         src\c\analyses\SmbAnalysis.h
A         src\c\analyses\SmoothAnalysis.cpp
A         src\c\analyses\SmoothAnalysis.h
A         src\c\analyses\StressbalanceSIAAnalysis.h
A         src\c\analyses\StressbalanceVerticalAnalysis.h
A         src\c\analyses\ThermalAnalysis.h
A         src\c\analyses\UzawaPressureAnalysis.h
A         src\c\cores
A         src\c\cores\controladm1qn3_core.cpp
A         src\c\cores\controlm1qn3_core.cpp
A         src\c\cores\transient_core.cpp
A         src\c\cores\debris_core.cpp
A         src\c\cores\love_core.cpp
A         src\c\cores\controlvalidation_core.cpp
A         src\c\cores\controltao_core.cpp
A         src\c\cores\hydrology_core.cpp
A         src\c\cores\sealevelchange_core.cpp
A         src\c\cores\cores.h
A         src\c\cores\movingfront_core.cpp
A         src\c\cores\ResetBoundaryConditions.cpp
A         src\c\cores\adgradient_core.cpp
A         src\c\cores\control_core.cpp
A         src\c\cores\dakota_core.cpp
A         src\c\cores\esa_core.cpp
A         src\c\cores\groundingline_core.cpp
A         src\c\cores\masstransport_core.cpp
A         src\c\cores\oceantransport_core.cpp
A         src\c\cores\sampling_core.cpp
A         src\c\cores\smb_core.cpp
A         src\c\cores\steadystate_core.cpp
A         src\c\cores\stressbalance_core.cpp
A         src\c\cores\thermal_core.cpp
A         src\c\cores\bmb_core.cpp
A         src\c\cores\ProcessArguments.cpp
A         src\c\cores\ad_core.cpp
A         src\c\cores\WrapperPreCorePointerFromSolutionEnum.cpp
A         src\c\cores\adjointstressbalance_core.cpp
A         src\c\cores\balancethickness_core.cpp
A         src\c\cores\extrudefromtop_core.cpp
A         src\c\cores\extrudefrombase_core.cpp
A         src\c\cores\depthaverage_core.cpp
A         src\c\cores\CorePointerFromSolutionEnum.cpp
A         src\c\cores\adjointbalancethickness2_core.cpp
A         src\c\cores\adjointbalancethickness_core.cpp
A         src\c\cores\balancethickness2_core.cpp
A         src\c\cores\balancevelocity_core.cpp
A         src\c\cores\bedslope_core.cpp
A         src\c\cores\damage_core.cpp
A         src\c\cores\surfaceslope_core.cpp
A         src\c\cores\levelsetfunctionslope_core.cpp
A         src\c\cores\WrapperCorePointerFromSolutionEnum.cpp
A         src\c\cores\AdjointCorePointerFromSolutionEnum.cpp
A         src\c\cores\dummy_core.cpp
A         src\c\toolkits
A         src\c\toolkits\petsc
A         src\c\toolkits\petsc\patches
A         src\c\toolkits\petsc\patches\PetscOptionsDetermineSolverType.cpp
A         src\c\toolkits\petsc\patches\ISSMToPetscInsertMode.cpp
A         src\c\toolkits\petsc\patches\ISSMToPetscMatrixType.cpp
A         src\c\toolkits\petsc\patches\ISSMToPetscNormMode.cpp
A         src\c\toolkits\petsc\patches\KSPFree.cpp
A         src\c\toolkits\petsc\patches\MatFree.cpp
A         src\c\toolkits\petsc\patches\MatMultPatch.cpp
A         src\c\toolkits\petsc\patches\NewMat.cpp
A         src\c\toolkits\petsc\patches\NewVec.cpp
A         src\c\toolkits\petsc\patches\VecFree.cpp
A         src\c\toolkits\petsc\patches\petscpatches.h
A         src\c\toolkits\petsc\patches\VecToMPISerial.cpp
A         src\c\toolkits\petsc\patches\MatToMPISerial.cpp
A         src\c\toolkits\petsc\patches\SolverEnum.h
A         src\c\toolkits\petsc\objects
A         src\c\toolkits\petsc\objects\PetscSolver.cpp
A         src\c\toolkits\petsc\objects\PetscVec.cpp
A         src\c\toolkits\petsc\objects\PetscMat.cpp
A         src\c\toolkits\petsc\objects\PetscMat.h
A         src\c\toolkits\petsc\objects\PetscVec.h
A         src\c\toolkits\petsc\objects\PetscSolver.h
A         src\c\toolkits\petsc\objects\petscobjects.h
A         src\c\toolkits\petsc\petscincludes.h
A         src\c\toolkits\ToolkitOptions.cpp
A         src\c\toolkits\ToolkitOptions.h
A         src\c\toolkits\mpi
A         src\c\toolkits\mpi\issmmpi.h
A         src\c\toolkits\mpi\issmmpi.cpp
A         src\c\toolkits\mpi\commops
A         src\c\toolkits\mpi\commops\DetermineLocalSize.cpp
A         src\c\toolkits\mpi\commops\DetermineRowRankFromLocalSize.cpp
A         src\c\toolkits\mpi\commops\commops.h
A         src\c\toolkits\mpi\commops\DetermineGlobalSize.cpp
A         src\c\toolkits\mpi\commops\GetOwnershipBoundariesFromRange.cpp
A         src\c\toolkits\issm
A         src\c\toolkits\issm\IssmMpiDenseMat.h
A         src\c\toolkits\issm\IssmMpiSparseMat.h
A         src\c\toolkits\issm\IssmMpiVec.h
A         src\c\toolkits\issm\IssmToolkitUtils.cpp
A         src\c\toolkits\issm\IssmDenseMat.h
A         src\c\toolkits\issm\IssmSeqVec.h
A         src\c\toolkits\issm\SparseRow.h
A         src\c\toolkits\issm\Bucket.h
A         src\c\toolkits\issm\IssmAbsVec.h
A         src\c\toolkits\issm\IssmVec.h
A         src\c\toolkits\issm\IssmAbsMat.h
A         src\c\toolkits\issm\IssmMat.h
A         src\c\toolkits\issm\issmtoolkit.h
A         src\c\toolkits\issm\IssmToolkitUtils.h
A         src\c\toolkits\issm\IssmSolver.cpp
A         src\c\toolkits\issm\IssmSolver.h
A         src\c\toolkits\objects
A         src\c\toolkits\objects\Matrix.h
A         src\c\toolkits\objects\Vector.h
A         src\c\toolkits\objects\Solver.h
A         src\c\toolkits\objects\toolkitobjects.h
A         src\c\toolkits\codipack
AU        src\c\toolkits\codipack\CoDiPackCommon.hpp
AU        src\c\toolkits\codipack\ampi_interface.cpp
AU        src\c\toolkits\codipack\CoDiPackGlobal.h
AU        src\c\toolkits\codipack\codipackincludes.h
A         src\c\toolkits\gsl
A         src\c\toolkits\gsl\DenseGslSolve.cpp
A         src\c\toolkits\gsl\gslincludes.h
A         src\c\toolkits\mumps
A         src\c\toolkits\mumps\MumpsSolve.cpp
A         src\c\toolkits\mumps\mumpsincludes.h
A         src\c\toolkits\mumps\MpiDenseMumpsSolve.cpp
A         src\c\toolkits\metis
A         src\c\toolkits\metis\patches
A         src\c\toolkits\metis\patches\METIS_PartMeshNodalPatch.cpp
A         src\c\toolkits\metis\patches\metispatches.h
A         src\c\toolkits\metis\metisincludes.h
A         src\c\toolkits\toolkits.h
A         src\c\toolkits\adolc
A         src\c\toolkits\adolc\AdolcEdf.h
A         src\c\toolkits\adolc\adolcincludes.h
A         src\c\toolkits\triangle
A         src\c\toolkits\triangle\triangleincludes.h
A         src\c\toolkits\toolkitsenums.h
A         src\c\toolkits\python
A         src\c\solutionsequences
A         src\c\solutionsequences\solutionsequence_schurcg.cpp
A         src\c\solutionsequences\solutionsequence_newton.cpp
A         src\c\solutionsequences\solutionsequence_hydro_nonlinear.cpp
A         src\c\solutionsequences\solutionsequences.h
A         src\c\solutionsequences\convergence.cpp
A         src\c\solutionsequences\solutionsequence_thermal_nonlinear.cpp
A         src\c\solutionsequences\solutionsequence_sampling.cpp
A         src\c\solutionsequences\solutionsequence_nonlinear.cpp
A         src\c\solutionsequences\solutionsequence_fct.cpp
A         src\c\solutionsequences\solutionsequence_glads_nonlinear.cpp
A         src\c\solutionsequences\solutionsequence_linear.cpp
A         src\c\solutionsequences\solutionsequence_shakti_nonlinear.cpp
A         src\c\solutionsequences\solutionsequence_adjoint_linear.cpp
A         src\c\solutionsequences\solutionsequence_la.cpp
A         src\c\solutionsequences\solutionsequence_la_theta.cpp
A         src\c\solutionsequences\solutionsequence_stokescoupling_nonlinear.cpp
A         src\c\datastructures
A         src\c\datastructures\DataSet.cpp
A         src\c\datastructures\DataSet.h
A         src\c\datastructures\Object.h
A         src\c\datastructures\datastructures.h
A         src\c\main
A         src\c\main\EnvironmentInit.cpp
A         src\c\main\issm_ocean.cpp
A         src\c\main\issm_slc.cpp
A         src\c\main\kriging.cpp
A         src\c\main\esmfbinders.cpp
A         src\c\main\issm.cpp
A         src\c\main\issm_post.cpp
A         src\c\main\issm_dakota.cpp
A         src\c\main\EnvironmentFinalize.cpp
A         src\c\main\globals.h
A         src\c\main\issm.js
A         src\c\main\issm.h
A         src\c\bamg
A         src\c\bamg\Mesh.cpp
A         src\c\bamg\BamgOpts.cpp
A         src\c\bamg\BamgOpts.h
A         src\c\bamg\BamgQuadtree.cpp
A         src\c\bamg\BamgQuadtree.h
A         src\c\bamg\Geometry.cpp
A         src\c\bamg\BamgGeom.h
A         src\c\bamg\Geometry.h
A         src\c\bamg\BamgVertex.cpp
A         src\c\bamg\Mesh.h
A         src\c\bamg\GeomEdge.h
A         src\c\bamg\GeomEdge.cpp
A         src\c\bamg\Triangle.h
A         src\c\bamg\ListofIntersectionTriangles.h
A         src\c\bamg\BamgVertex.h
A         src\c\bamg\ListofIntersectionTriangles.cpp
A         src\c\bamg\Triangle.cpp
A         src\c\bamg\typedefs.h
A         src\c\bamg\AdjacentTriangle.h
A         src\c\bamg\det.h
A         src\c\bamg\AdjacentTriangle.cpp
A         src\c\bamg\macros.h
A         src\c\bamg\BamgMesh.cpp
A         src\c\bamg\Metric.cpp
A         src\c\bamg\bamgobjects.h
A         src\c\bamg\BamgMesh.h
A         src\c\bamg\Metric.h
A         src\c\bamg\EigenMetric.cpp
A         src\c\bamg\VertexOnGeom.cpp
A         src\c\bamg\R2.h
A         src\c\bamg\VertexOnVertex.cpp
A         src\c\bamg\BamgGeom.cpp
A         src\c\bamg\CrackedEdge.cpp
A         src\c\bamg\SubDomain.cpp
A         src\c\bamg\Curve.cpp
A         src\c\bamg\GeomVertex.cpp
A         src\c\bamg\GeomSubDomain.cpp
A         src\c\bamg\VertexOnEdge.cpp
A         src\c\bamg\Edge.cpp
A         src\c\bamg\SetOfE4.cpp
A         src\c\bamg\Curve.h
A         src\c\bamg\SetOfE4.h
A         src\c\bamg\Edge.h
A         src\c\bamg\GeomSubDomain.h
A         src\c\bamg\VertexOnEdge.h
A         src\c\bamg\VertexOnGeom.h
A         src\c\bamg\VertexOnVertex.h
A         src\c\bamg\CrackedEdge.h
A         src\c\bamg\SubDomain.h
A         src\c\bamg\include.h
A         src\c\bamg\GeomVertex.h
A         src\c\kml
A         src\c\kml\KML_Attribute.h
A         src\c\kml\KML_ColorStyle.h
A         src\c\kml\KML_Comment.h
A         src\c\kml\KML_Container.h
A         src\c\kml\KML_Document.h
A         src\c\kml\KML_Feature.h
A         src\c\kml\KML_File.h
A         src\c\kml\KML_Folder.h
A         src\c\kml\KML_Geometry.h
A         src\c\kml\KML_GroundOverlay.h
A         src\c\kml\KML_Icon.h
A         src\c\kml\KML_LatLonBox.h
A         src\c\kml\KML_LineString.h
A         src\c\kml\KML_LineStyle.h
A         src\c\kml\KML_LinearRing.h
A         src\c\kml\KML_MultiGeometry.h
A         src\c\kml\KML_Object.h
A         src\c\kml\KML_Overlay.h
A         src\c\kml\KML_Placemark.h
A         src\c\kml\KML_Point.h
A         src\c\kml\KML_PolyStyle.h
A         src\c\kml\KML_Polygon.h
A         src\c\kml\KML_Style.h
A         src\c\kml\KML_StyleSelector.h
A         src\c\kml\KML_SubStyle.h
A         src\c\kml\KML_Unknown.h
A         src\c\kml\KML_Geometry.cpp
A         src\c\kml\KML_ColorStyle.cpp
A         src\c\kml\KML_Placemark.cpp
A         src\c\kml\KML_Unknown.cpp
A         src\c\kml\KML_GroundOverlay.cpp
A         src\c\kml\KML_Style.cpp
A         src\c\kml\KML_Comment.cpp
A         src\c\kml\KML_MultiGeometry.cpp
A         src\c\kml\KML_LineStyle.cpp
A         src\c\kml\KML_Folder.cpp
A         src\c\kml\KML_Document.cpp
A         src\c\kml\KML_File.cpp
A         src\c\kml\KML_Icon.cpp
A         src\c\kml\KML_Point.cpp
A         src\c\kml\KML_LinearRing.cpp
A         src\c\kml\KML_Feature.cpp
A         src\c\kml\KMLFileReadUtils.cpp
A         src\c\kml\KML_StyleSelector.cpp
A         src\c\kml\KML_LatLonBox.cpp
A         src\c\kml\KML_Attribute.cpp
A         src\c\kml\KML_PolyStyle.cpp
A         src\c\kml\KML_Object.cpp
A         src\c\kml\KML_SubStyle.cpp
A         src\c\kml\KML_LineString.cpp
A         src\c\kml\KML_Overlay.cpp
A         src\c\kml\KML_Container.cpp
A         src\c\kml\KML_Polygon.cpp
A         src\c\kml\kmlobjects.h
A         src\c\kml\KMLFileReadUtils.h
A         src\Makefile.am
A         src\dox
A         src\dox\issm.dox
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AU        test\Data\shp\HemisphereSplit.shx
AU        test\Data\shp\NorthAntarctica.dbf
A         test\Data\shp\NorthAntarctica.prj
A         test\Data\shp\NorthAntarctica.qpj
AU        test\Data\shp\NorthAntarctica.shp
AU        test\Data\shp\NorthAntarctica.shx
A         test\Data\shp\RonneBrunt.cpg
AU        test\Data\shp\RonneBrunt.dbf
A         test\Data\shp\RonneBrunt.prj
A         test\Data\shp\RonneBrunt.qpj
AU        test\Data\shp\RonneBrunt.shp
AU        test\Data\shp\RonneBrunt.shx
A         test\Data\shp\RonneEastSummit.cpg
AU        test\Data\shp\RonneEastSummit.dbf
A         test\Data\shp\RonneEastSummit.prj
A         test\Data\shp\RonneEastSummit.qpj
AU        test\Data\shp\RonneEastSummit.shp
AU        test\Data\shp\RonneEastSummit.shx
A         test\Data\shp\RonneFront.cpg
AU        test\Data\shp\RonneFront.dbf
A         test\Data\shp\RonneFront.prj
A         test\Data\shp\RonneFront.qpj
AU        test\Data\shp\RonneFront.shp
AU        test\Data\shp\RonneFront.shx
A         test\Data\shp\RonneIceShelf.cpg
AU        test\Data\shp\RonneIceShelf.dbf
A         test\Data\shp\RonneIceShelf.prj
A         test\Data\shp\RonneIceShelf.qpj
AU        test\Data\shp\RonneIceShelf.shp
AU        test\Data\shp\RonneIceShelf.shx
A         test\Data\shp\RonneWestSummit.cpg
AU        test\Data\shp\RonneWestSummit.dbf
A         test\Data\shp\RonneWestSummit.prj
A         test\Data\shp\RonneWestSummit.qpj
AU        test\Data\shp\RonneWestSummit.shp
AU        test\Data\shp\RonneWestSummit.shx
A         test\Data\shp\RossFront.cpg
AU        test\Data\shp\RossFront.dbf
A         test\Data\shp\RossFront.prj
A         test\Data\shp\RossFront.qpj
AU        test\Data\shp\RossFront.shp
AU        test\Data\shp\RossFront.shx
A         test\Data\shp\RossIceShelf.cpg
AU        test\Data\shp\RossIceShelf.dbf
A         test\Data\shp\RossIceShelf.prj
A         test\Data\shp\RossIceShelf.qpj
AU        test\Data\shp\RossIceShelf.shp
AU        test\Data\shp\RossIceShelf.shx
A         test\Data\shp\RossWestFront.cpg
AU        test\Data\shp\RossWestFront.dbf
A         test\Data\shp\RossWestFront.prj
A         test\Data\shp\RossWestFront.qpj
AU        test\Data\shp\RossWestFront.shp
AU        test\Data\shp\RossWestFront.shx
AU        test\Data\shp\SouthAntarctica.dbf
A         test\Data\shp\SouthAntarctica.prj
A         test\Data\shp\SouthAntarctica.qpj
AU        test\Data\shp\SouthAntarctica.shp
AU        test\Data\shp\SouthAntarctica.shx
A         test\Data\shp\WestAntarctica2.cpg
AU        test\Data\shp\WestAntarctica2.dbf
A         test\Data\shp\WestAntarctica2.prj
A         test\Data\shp\WestAntarctica2.qpj
AU        test\Data\shp\WestAntarctica2.shp
AU        test\Data\shp\WestAntarctica2.shx
AU        test\Data\Pig.arch
AU        test\Data\gemb_input.npy
AU        test\Data\gemb_input.mat
AU        test\Data\SquareShelf.arch
A         test\Data\convertmattoarch.m
AU        test\Data\SquareSheetConstrained.arch
AU        test\Data\ISMIPE.arch
AU        test\Data\79North.arch
AU        test\Data\SquareSheetShelf.arch
AU        test\Data\SquareShelfConstrained.arch
A         test\Data\loadarch.m
A         test\Data\love_numbers_10k.txt
A         test\Data\SquareShelfConstrained.data.js
A         test\Data\delta18o.data
A         test\Par
A         test\Par\GiaIvinsBenchmarksAB.py
A         test\Par\GiaIvinsBenchmarksAB.par
AU        test\Par\SquareSheetConstrained.py
AU        test\Par\SquareSheetConstrained.par
A         test\Par\ValleyGlacierShelf.par
A         test\Par\ValleyGlacierShelf.py
A         test\Par\SquareShelf.py
A         test\Par\79North.py
AU        test\Par\Pig.py
A         test\Par\SquareSheetConstrainedCO2.py
A         test\Par\SquareSheetShelf.py
A         test\Par\SquareShelf2.py
A         test\Par\SquareShelfConstrained.py
A         test\Par\GiaIvinsBenchmarksCD.py
A         test\Par\GiaIvinsBenchmarksCD.par
AU        test\Par\SquareNoDyn.py
AU        test\Par\79North.par
AU        test\Par\ISMIPA.par
AU        test\Par\ISMIPB.par
AU        test\Par\ISMIPC.par
AU        test\Par\ISMIPD.par
AU        test\Par\IceCube.par
AU        test\Par\Pig.par
AU        test\Par\RoundSheetShelf.par
AU        test\Par\RoundSheetStaticEISMINT.par
A         test\Par\SquareEISMINT.par
AU        test\Par\SquareNoDyn.par
A         test\Par\SquareSheetConstrainedCO2.par
AU        test\Par\SquareSheetShelf.par
AU        test\Par\SquareShelf.par
AU        test\Par\SquareShelf2.par
AU        test\Par\SquareShelfConstrained.par
AU        test\Par\SquareThermal.par
AU        test\Par\ISMIPA.py
AU        test\Par\ISMIPB.py
AU        test\Par\ISMIPC.py
AU        test\Par\ISMIPD.py
AU        test\Par\IceCube.py
AU        test\Par\RoundSheetShelf.py
AU        test\Par\RoundSheetStaticEISMINT.py
A         test\Par\SquareEISMINT.py
AU        test\Par\SquareThermal.py
AU        test\Par\ISMIPF.py
AU        test\Par\RoundSheetEISMINT.py
AU        test\Par\ISMIPE.py
AU        test\Par\SquareShelfConstrained.js
AU        test\Par\ISMIPE.par
AU        test\Par\RoundSheetEISMINT.par
AU        test\Par\ISMIPF.par
A         test\SandBox
A         test\SandBox\test2002.m
A         test\SandBox\Makefile
A         test\SandBox\hier2002.m
A         test\SandBox\partmme2002.m
A         test\SandBox\scale2002_element.m
A         test\SandBox\scale2002_vertices.m
A         test\SandBox\bp2002.m
A         test\SandBox\corr2002.m
A         test\SandBox\dak2002.m
A         test\SandBox\geoid2002.m
A         test\SandBox\gia2002.m
A         test\SandBox\interpBedmap2.m
A         test\SandBox\mmedak.m
A         test\SandBox\res2002.m
A         test\SandBox\testbayes.m
A         test\SandBox\tran2002.m
A         test\SandBox\val2002.m
A         test\Exp
AU        test\Exp\Ais.exp
AU        test\Exp\Strip.exp
AU        test\Exp\Square.js
AU        test\Exp\SquareOne.exp
AU        test\Exp\SquareFront.exp
A         test\Exp\79North.exp
AU        test\Exp\SquareFront2.exp
AU        test\Exp\Square_5000.exp
AU        test\Exp\Square_10000.exp
AU        test\Exp\Square_20000.exp
AU        test\Exp\Square_40000.exp
AU        test\Exp\Square_80000.exp
AU        test\Exp\Square_160000.exp
AU        test\Exp\ISMIP100000.exp
A         test\Exp\PigShelves.exp
A         test\Exp\Pig.exp
A         test\Exp\SquareEISMINT750000.exp
AU        test\Exp\ISMIPE.exp
AU        test\Exp\ISMIP5000.exp
AU        test\Exp\ISMIP160000.exp
AU        test\Exp\ISMIP10000.exp
AU        test\Exp\ISMIP20000.exp
AU        test\Exp\ISMIP40000.exp
AU        test\Exp\ISMIP80000.exp
AU        test\Exp\SquareISMIP.exp
AU        test\Exp\SquareHole.exp
A         test\Exp\RoundFrontEISMINT.exp
A         test\Exp\CrossLineEISMINT.exp
A         test\Exp\SquareEISMINT.exp
A         test\Exp\SquareFrontEISMINT.exp
A         test\Exp\MassFlux6.exp
A         test\Exp\MassFlux2.exp
A         test\Exp\MassFlux3.exp
A         test\Exp\MassFlux4.exp
A         test\Exp\MassFlux5.exp
A         test\Exp\MassFlux1.exp
A         test\Exp\Rifts.exp
AU        test\Exp\SquareShelf.exp
AU        test\Exp\SquareHalfRight.exp
A         test\Exp\SquareRifts.exp
A         test\Exp\79NorthShelf.exp
A         test\Exp\PigIslands.exp
A         test\Exp\SquareRiftsLateral.exp
AU        test\Exp\Square.exp
A         m4
A         m4\issm_options.m4
A         m4\analyses.m4
AU        m4\ar-lib.m4
A         packagers
A         packagers\win
A         packagers\win\package-issm-win-binaries-matlab.sh
A         packagers\win\complete-issm-win-binaries-matlab.sh
A         packagers\win\transfer-issm-win-binaries.sh
A         packagers\mac
AU        packagers\mac\commit_for_signing-issm-mac-binaries-matlab.sh
AU        packagers\mac\commit_for_signing-issm-mac-binaries-python-3.sh
AU        packagers\mac\package-issm-mac-binaries-matlab.sh
AU        packagers\mac\package-issm-mac-binaries-python-3.sh
AU        packagers\mac\sign-issm-mac-binaries-matlab.sh
AU        packagers\mac\sign-issm-mac-binaries-python-3.sh
AU        packagers\mac\test-issm-mac-binaries-matlab.sh
AU        packagers\mac\test-issm-mac-binaries-python-3.sh
AU        packagers\mac\complete-issm-mac-binaries-matlab.sh
AU        packagers\mac\complete-issm-mac-binaries-python-3.sh
AU        packagers\mac\transfer-issm-mac-binaries.sh
A         packagers\mac\issm-executable_entitlements.plist
A         packagers\linux
AU        packagers\linux\package-issm-linux-binaries-matlab.sh
AU        packagers\linux\package-issm-linux-binaries-python-3.sh
AU        packagers\linux\complete-issm-linux-binaries-matlab.sh
AU        packagers\linux\complete-issm-linux-binaries-python-3.sh
AU        packagers\linux\transfer-issm-linux-binaries.sh
A         scripts
AU        scripts\svn_repo_authors.sh
AU        scripts\BinRead.py
AU        scripts\py_to_pyc.sh
AU        scripts\DownloadExamplesDatasets.sh
A         scripts\ol.m
A         scripts\ola.m
AU        scripts\DownloadExternalPackage.sh
A         scripts\ols.m
AU        scripts\devpath.py
AU        scripts\cloc2html.py
AU        scripts\getloc.sh
AU        scripts\cloc
AU        scripts\OutbinRead.py
AU        scripts\translateToPy.py
AU        scripts\DownloadExternalPackage.py
AU        scripts\convertmatlabclasses.py
AU        scripts\mToPy.py
AU        scripts\automakererun.sh
AU        scripts\cppcheck.sh
A         scripts\ConvertAllNetcdfArchivesToArch.m
AU        scripts\ol
AU        scripts\GenerateReferences.sh
AU        scripts\vie
AU        scripts\vil
AU        scripts\tai
AU        scripts\report.sh
A         scripts\historyISSM.m
AU        scripts\issmconfiguration.sh
AU        scripts\windowsbuild.sh
AU        scripts\mail
AU        scripts\wincron.sh
AU        scripts\matlabissm.bat
AU        scripts\intel-compile.sh
AU        scripts\jpic2pdf
A         scripts\pdfcrop.pl
AU        scripts\user_kill
AU        scripts\svnvimdiff
AU        scripts\svnlog
A         etc
A         etc\environment.sh
A         etc\environment.csh
A         examples
A         examples\EsaGRACE
A         examples\EsaGRACE\runme.m
A         examples\EsaGRACE\Models
A         examples\StISSM
AU        examples\StISSM\runme.m
A         examples\StISSM\DomainOutline.exp
A         examples\StISSM\Models
AU        examples\StISSM\PigStISSM.par
A         examples\Greenland
AU        examples\Greenland\runme.m
AU        examples\Greenland\runme.py
A         examples\Greenland\CheatSheet.py
AU        examples\Greenland\Greenland.py
AU        examples\Greenland\Greenland.par
A         examples\Greenland\CheatSheet.m
A         examples\Greenland\DomainOutline.exp
A         examples\Greenland\Models
A         examples\UncertaintyQuantification
AU        examples\UncertaintyQuantification\runme.m
A         examples\UncertaintyQuantification\MassFluxes
A         examples\UncertaintyQuantification\MassFluxes\MassFlux10.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux1.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux2.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux11.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux3.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux12.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux4.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux13.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux5.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux14.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux6.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux15.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux7.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux8.exp
A         examples\UncertaintyQuantification\MassFluxes\MassFlux9.exp
A         examples\UncertaintyQuantification\ErrorContour.exp
A         examples\UncertaintyQuantification\Models
A         examples\Inversion
A         examples\Inversion\runme.m
A         examples\Inversion\Square.par
A         examples\Inversion\Square.py
A         examples\Inversion\runme.py
A         examples\Inversion\DomainOutline.exp
AU        examples\Inversion\Front.exp
A         examples\SlrGRACE
A         examples\SlrGRACE\runme.m
A         examples\SlrGRACE\Models
A         examples\IceBridge
AU        examples\IceBridge\runme.m
AU        examples\IceBridge\Greenland.par
AU        examples\IceBridge\Greenland_noOIB.par
AU        examples\IceBridge\Greenland_solution.par
A         examples\IceBridge\Jak_outline.exp
A         examples\IceBridge\DomainOutline.exp
A         examples\IceBridge\Models
A         examples\IceBridge\Jak_grounded.exp
A         examples\IceBridge\data_gaps.exp
A         examples\Jakobshavn
A         examples\Jakobshavn\runme.m
AU        examples\Jakobshavn\Jks.par
A         examples\Jakobshavn\Domain.exp
A         examples\Jakobshavn\Front.exp
A         examples\Jakobshavn\WeakB.exp
A         examples\AMR
A         examples\AMR\runme_with_neopz.m
A         examples\AMR\mismip.py
A         examples\AMR\runme.py
A         examples\AMR\runme.m
A         examples\AMR\mismip.par
A         examples\AMR\domain.exp
A         examples\AMR\front.exp
A         examples\shakti
A         examples\shakti\moulin.py
A         examples\shakti\runme.m
A         examples\shakti\moulin.par
A         examples\shakti\runme.py
A         examples\shakti\outline.exp
A         examples\SquareIceShelf
A         examples\SquareIceShelf\Square.py
A         examples\SquareIceShelf\runme.py
A         examples\SquareIceShelf\Square.par
A         examples\SquareIceShelf\runme.m
AU        examples\SquareIceShelf\Front.exp
A         examples\SquareIceShelf\DomainOutline.exp
A         examples\Mesh
A         examples\Mesh\circles.py
A         examples\Mesh\shock.py
A         examples\Mesh\circles.m
A         examples\Mesh\shock.m
AU        examples\Mesh\Square.exp
A         examples\ISMIP
A         examples\ISMIP\IsmipA.py
A         examples\ISMIP\IsmipF.py
A         examples\ISMIP\runme.py
A         examples\ISMIP\IsmipF.par
A         examples\ISMIP\runme.m
A         examples\ISMIP\Models
A         examples\ISMIP\IsmipA.par
A         examples\EsaWahr
A         examples\EsaWahr\runme.m
A         examples\EsaWahr\RoundDomain.exp
A         examples\EsaWahr\Models
A         examples\Functions
AU        examples\Functions\grace.m
AU        examples\Functions\domain_mask.m
A         examples\SlrFarrell
A         examples\SlrFarrell\runme.m
AU        examples\SlrFarrell\Farrell_1976_Fig1.pdf
A         examples\SlrFarrell\Models
A         examples\LcurveAnalysis
A         examples\LcurveAnalysis\runme.m
A         examples\LcurveAnalysis\Square.par
A         examples\LcurveAnalysis\DomainOutline.exp
AU        examples\LcurveAnalysis\Front.exp
A         examples\Pig
AU        examples\Pig\runme.m
A         examples\Pig\Pig.par
AU        examples\Pig\PigRegion.m
A         examples\Pig\DomainOutline.bkp
A         examples\Pig\Models
A         examples\Pig2
AU        examples\Pig2\runme.m
A         examples\Pig2\Pig.par
A         examples\Pig2\DomainOutline.exp
A         examples\Pig2\FrontRetreat.exp
A         examples\Pig2\Models
A         examples\PigSensitivity
AU        examples\PigSensitivity\runme.m
A         examples\PigSensitivity\Help.m
A         examples\PigSensitivity\FrontRetreat.exp
A         examples\PigSensitivity\Models
A         examples\Data
A         examples\IceflowModels
AU        examples\IceflowModels\EISMINT.par
AU        examples\IceflowModels\SquareShelf.par
AU        examples\IceflowModels\eismint.m
AU        examples\IceflowModels\runme.m
A         examples\IceflowModels\Contour.exp
AU        examples\IceflowModels\SquareFront.exp
A         examples\IceflowModels\RoundFront.exp
AU        examples\IceflowModels\Square.exp
A         examples\README.txt
A         Makefile.am
A         bin
A         README
A         lib
A         execution
A         patches
A         patches\issm_options.m4
A         patches\configure.ac
A         patches\Makefile.am_MATLAB
A         patches\Makefile.am_C
A         aux-config
AU        ltmain.sh
AU        README.rtf
 U        .
At revision 28019

Using sole credentials ISSM SVN repositories - Mathieu Morlighem in realm ‘<https://issm.ess.uci.edu:443> Your s383 passwd’
[Windows-Binaries-MATLAB] $ C:\msys64\usr\bin\bash C:\Users\jenkins\jenkins1096625862054740147.sh
Cleaning up execution directory
======================================================
             Determining Installation type            
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Previous revision not found, this must be a fresh install
  -- checking for changed externalpackages... yes
  -- checking for reconfiguration... yes
  -- checking for recompilation... yes
 
Recording current svn version: 28019
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       Installing msmpi                        
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       Installing petsc                        
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       Installing triangle                        
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       Installing chaco                        
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       Installing m1qn3                        
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       Installing semic                        
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       Installing shell2junit                        
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             Cleaning up and reconfiguring            
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make: *** No rule to make target 'uninstall'.  Stop.
make: *** No rule to make target 'distclean'.  Stop.
autoreconf-2.71: export WARNINGS=
autoreconf-2.71: Entering directory '.'
autoreconf-2.71: configure.ac: not using Gettext
autoreconf-2.71: running: aclocal --force -I m4
autoreconf-2.71: configure.ac: tracing
autoreconf-2.71: running: libtoolize --copy --force
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'.
libtoolize: copying file './aux-config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
autoreconf-2.71: configure.ac: not using Intltool
autoreconf-2.71: configure.ac: not using Gtkdoc
autoreconf-2.71: running: aclocal --force -I m4
autoreconf-2.71: running: /usr/bin/autoconf-2.71 --force
autoreconf-2.71: running: /usr/bin/autoheader-2.71 --force
autoreconf-2.71: running: automake --add-missing --copy --force-missing
configure.ac:29: installing './aux-config/ar-lib'
configure.ac:18: installing './aux-config/compile'
configure.ac:15: installing './aux-config/config.guess'
configure.ac:15: installing './aux-config/config.sub'
configure.ac:26: installing './aux-config/install-sh'
configure.ac:26: installing './aux-config/missing'
src/c/Makefile.am: installing './aux-config/depcomp'
autoreconf-2.71: Leaving directory '.'
configure: ============================================================================
configure: =      Ice-sheet and Sea-level System Model (ISSM) 4.24 configuration      =
configure: ============================================================================
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checking host system type... x86_64-pc-mingw64
checking target system type... x86_64-pc-mingw64
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checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
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checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
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checking whether the compiler supports GNU C++... yes
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checking whether the compiler supports GNU Fortran 77... yes
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checking for gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
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checking if the linker (C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe) is GNU ld... yes
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checking the name lister (/mingw64/bin/nm -B) interface... BSD nm
checking whether ln -s works... no, using cp -pR
checking the maximum length of command line arguments... 8192
checking how to convert x86_64-pc-mingw64 file names to x86_64-pc-mingw64 format... func_convert_file_msys_to_w32
checking how to convert x86_64-pc-mingw64 file names to toolchain format... func_convert_file_msys_to_w32
checking for C:/msys64/mingw64/x86_64-w64-mingw32/bin/ld.exe option to reload object files... -r
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configure: ============================================================================
configure: =                      Checking ISSM specific options                      =
configure: ============================================================================
checking for date... /usr/bin/date
checking for build date... Fri Nov 17 15:19:03 PST 2023
checking user name... jenkins
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======================================================
                    Compiling ISSM                    
======================================================
Making with 4 CPUs
make  all-recursive
make[1]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB'
Making all in src
make[2]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src'
Making all in c
make[3]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src/c'
  CXX      classes/libISSMCore_la-IoModel.lo
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./classes/IoModel.cpp: In member function 'void IoModel::FetchConstants()':
./classes/IoModel.cpp:762:51: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
  762 |                                         fseek(fid,-sizeof(int),SEEK_CUR); //backtrak 1 integer
      |                                                   ^~~~~~~~~~~~
./classes/IoModel.cpp: In member function 'fpos_t* IoModel::SetFilePointersToData(int**, int**, int*, const char*)':
./classes/IoModel.cpp:2949:80: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
 2949 |                                 if(5<=record_code && record_code<=7) fseek(fid,-sizeof(int),SEEK_CUR); /*rewind for nodal or elementary type*/
      |                                                                                ^~~~~~~~~~~~
./classes/IoModel.cpp:2950:43: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
 2950 |                                 fseek(fid,-sizeof(int),SEEK_CUR);/*rewind for data code*/
      |                                           ^~~~~~~~~~~~
./classes/IoModel.cpp:2951:43: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551608' to '-8' [-Woverflow]
 2951 |                                 fseek(fid,-sizeof(long long),SEEK_CUR);/*rewind for record length*/
      |                                           ^~~~~~~~~~~~~~~~~~
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  CXX      shared/Random/libISSMCore_la-random.lo
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  CXX      modules/NodesDofx/libISSMCore_la-NodesDofx.lo
  CXX      modules/ParseToolkitsOptionsx/libISSMCore_la-ParseToolkitsOptionsx.lo
  CXX      modules/NodalValuex/libISSMCore_la-NodalValuex.lo
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  CXX      modules/CreateJacobianMatrixx/libISSMCore_la-CreateJacobianMatrixx.lo
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  CXX      modules/GetVectorFromInputsx/libISSMCore_la-GetVectorFromInputsx.lo
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  CXX      modules/FloatingiceMeltingRatex/libISSMCore_la-FloatingiceMeltingRatex.lo
  CXX      modules/FloatingiceMeltingRatePicox/libISSMCore_la-FloatingiceMeltingRatePicox.lo
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  CXXLD    libISSMCore.la
  CXXLD    libISSMModules.la
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: ./modules/Trianglex/.libs/libISSMModules_la-Trianglex.o: in function `Trianglex(int**, double**, double**, int**, int**, int*, int*, int*, Contours*, Contours*, double)':
C:\Users\jenkins\Jenkins\workspace\Windows-Binaries-MATLAB\src\c/./modules/Trianglex/Trianglex.cpp:160:(.text+0x4aa): undefined reference to `triangulate(char*, triangulateio*, triangulateio*, triangulateio*)'
collect2.exe: error: ld returned 1 exit status
make[3]: *** [Makefile:5067: libISSMModules.la] Error 1
make[3]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src/c'
make[2]: *** [Makefile:473: all-recursive] Error 1
make[2]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src'
make[1]: *** [Makefile:595: all-recursive] Error 1
make[1]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB'
make: *** [Makefile:492: all] Error 2
 
Compilation failed, trying to compile with only one thread
 
make  all-recursive
make[1]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB'
Making all in src
make[2]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src'
Making all in c
make[3]: Entering directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src/c'
  CXXLD    libISSMModules.la
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/13.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: ./modules/Trianglex/.libs/libISSMModules_la-Trianglex.o: in function `Trianglex(int**, double**, double**, int**, int**, int*, int*, int*, Contours*, Contours*, double)':
C:\Users\jenkins\Jenkins\workspace\Windows-Binaries-MATLAB\src\c/./modules/Trianglex/Trianglex.cpp:160:(.text+0x4aa): undefined reference to `triangulate(char*, triangulateio*, triangulateio*, triangulateio*)'
collect2.exe: error: ld returned 1 exit status
make[3]: *** [Makefile:5067: libISSMModules.la] Error 1
make[3]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src/c'
make[2]: *** [Makefile:473: all-recursive] Error 1
make[2]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB/src'
make[1]: *** [Makefile:595: all-recursive] Error 1
make[1]: Leaving directory '/c/Users/jenkins/Jenkins/workspace/Windows-Binaries-MATLAB'
make: *** [Makefile:492: all] Error 2
ISSM_COMPILATION failed!
Build step 'Execute shell' marked build as failure
Finished: FAILURE