Changes

Delete README
 (commit: f722f58)

CHG: upgrading to latest PETSc version
 (commit: f90c46a)

BUG: Path to libgfortran
 (commit: df2b7bd)

CHG: Need libgcc in package
 (commit: 8728b60)

BUG: Path fixes
 (commit: dbaaac8)

BUG: Not catching runme error; 'exclude_name' option no longer exists
 (commit: fdf735f)

CHG: svn -> git; uncommitted cluster class; clean up of devpath from when we couldn't compile native Silicon MEX-files
 (commit: 0ab2011)

BUG: Incorrect file name
 (commit: 00e5cd2)

CHG: Virtual environment not preserved in called script
 (commit: 5bca2aa)

CHG: removing old scripts
 (commit: e6392fa)

CHG: moved up one directory and removed  from version check
 (commit: ce3c9bb)

CHG: adding more files to gitignore
 (commit: 01ce958)

CHG: Adjusted tolerances
 (commit: 64353b1)

CHG: Minor changes to test fixes to GitHub Webhook -> Jenkins
 (commit: 67730b9)

CHG: removing reference to cshrc, replacing by zshrc
 (commit: efea8d3)

CHG: Adjusted tolerances
 (commit: e8a3cb5)

CHG: Removing Cmake to avoid conflicts with standalone copy
 (commit: 4fa30f1)

BUG: Removed 'command'
 (commit: 361128b)

ADD: Missing empty Models/ dir
 (commit: 16ff615)

Update of .gitignore.
 (commit: a28a358)

Moved all CoDiPack specific functions to CoDiPackGlobal.h.
 (commit: 0316be7)

CHG: Add default location for libgfortran on Mac to rpath
 (commit: 84ea771)

CHG: adaptive time stepping needs vz in 3d
 (commit: 861dc45)

CHG: throw error message if FCT in 3d
 (commit: 35053c5)

CHG: Use git now to get changes and determine installation type
 (commit: 4599fe3)

CHG: minor, testing to see if jenkins will recompile
 (commit: 520a010)

CHG: forgot to change path to m/mesh/planet
 (commit: 727459b)

CHG: Additions to ignore list
 (commit: 4378483)

Create codeql.yml

Adding code scanning for security vulnerabilities
 (commit: 0cb8aca)

Bump the npm_and_yarn group across 1 directory with 2 updates

Bumps the npm_and_yarn group with 2 updates in the /jenkins/javascript/karma directory: [karma](https://github.com/karma-runner/karma) and [mathjs](https://github.com/josdejong/mathjs).


Updates `karma` from 0.13.22 to 6.4.3
- [Release notes](https://github.com/karma-runner/karma/releases)
- [Changelog](https://github.com/karma-runner/karma/blob/master/CHANGELOG.md)
- [Commits](https://github.com/karma-runner/karma/compare/v0.13.22...v6.4.3)

Updates `mathjs` from 3.20.2 to 13.0.0
- [Changelog](https://github.com/josdejong/mathjs/blob/develop/HISTORY.md)
- [Commits](https://github.com/josdejong/mathjs/compare/v3.20.2...v13.0.0)

---
updated-dependencies:
- dependency-name: karma
  dependency-type: direct:development
  dependency-group: npm_and_yarn
- dependency-name: mathjs
  dependency-type: direct:development
  dependency-group: npm_and_yarn
...

Signed-off-by: dependabot[bot] <support@github.com>
 (commit: a4e0257)

CHG: Fixes for gfortran path in rpath; new config for CodeQL
 (commit: 1e3507d)

Update codeql.yml
 (commit: 1dab3bf)

Update codeql.yml
 (commit: 0b666a6)

Update codeql.yml
 (commit: f1d20f2)

Update codeql.yml
 (commit: f53e75a)

CHG: Disabling wrappers on CodeQL build
 (commit: b5f1b8f)

CHG: Correcting handling of git commit and changes when fetch has not been used
 (commit: c0b9d49)

Delete codeql.yml

Deleting for now until external packages can be offloaded to package managers.
 (commit: ebaf87e)

CHG: Adding whitespace and rerunning jobs
 (commit: fa36bf7)

CHG: removing double blank lines
 (commit: 0586570)

CHG: Adjusted tolerances
 (commit: 6e744f2)

CHG: Updates to UB CCR config; changed path of gmshplanet.py
 (commit: d9a0c8b)

CHG: do not rotate matrices if no node is rotated (breaking a golden rule here: this change is NOT tested yet, sorry if I am breaking anything
 (commit: c02b705)

CoDiPack type can be defined during the configuration.
 (commit: 52173da)

BUG: Need to update previous commit every time we run
 (commit: 7fb17d4)

CHG: Outstanding commit and test fix to git change polling
 (commit: 9870579)

Extracted common computation from StressbalanceAnalysis.cpp.
 (commit: 173984e)

Added Preaccumulation helper for sparse row assembly.
 (commit: a7ae0dd)

BUG: Fix for rpath anb libgfortran on Mac; no effect, but make sure MSYS2 is set correctly
 (commit: b2271bf)

CHG: vertical speed needs md.basalforcings.perturbation_melting_rate
 (commit: 8d4bb33)

CHG: vertical speed needs md.basalforcings.perturbation_melting_rate
 (commit: 7541e0c)

CHG: missing -fPIC install-linux.sh
 (commit: 1ea61ca)

CHG: macOS now only provides python3 and not python, and header files are now in the Headers directory
 (commit: bf9c1e1)

CHG: removing SLEPSC and ADIC2 that we have never used
 (commit: 938aaa9)

CHG: adding common factor to KMatrices StressBalance
 (commit: 31753cc)

CHG: do not extrude lat/lon if undefined
 (commit: fe118e0)

CHG: refine should deal with lat/long as well
 (commit: b6eb641)

BUG: output is md2 and not md
 (commit: 53a5f78)

CHG: if no observations are provided, we can still use md.initialization.vx/vy to set new spc's
 (commit: 81a688b)

CHG: New cluster class for submitting jobs to UB CCR; typos
 (commit: 7885d2b)

CHG: adding factors to analysis
 (commit: 44d1c2c)

CHG: added Data directory for examples
 (commit: 19b70db)

CHG: adding factors in analysis
 (commit: 3a66e7c)

CHG: added factors in analysis
 (commit: 1644d52)

CHG: fixed problem with Glads
 (commit: 2063a05)

BUG: MPI_Wait should wait for the cpu that is receiving for once, which created seg faults with AD
 (commit: d04ef90)